Wall clock time and date at job start Tue Mar 31 2020 11:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46755 * 2 1 4 4 H 1.08997 * 109.46852 * 304.99415 * 3 2 1 5 5 C 1.50702 * 109.46681 * 184.99993 * 3 2 1 6 6 H 1.08000 * 119.99813 * 239.99994 * 5 3 2 7 7 C 1.37874 * 120.00425 * 59.99887 * 5 3 2 8 8 N 1.31520 * 119.99836 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00282 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47093 * 60.00152 * 9 7 5 11 11 H 1.48499 * 109.47086 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47194 * 299.99875 * 9 7 5 13 13 N 1.46495 * 109.47162 * 65.00236 * 3 2 1 14 14 C 1.34783 * 119.99780 * 274.99740 * 13 3 2 15 15 O 1.21280 * 119.99833 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99914 * 180.02562 * 14 13 3 17 17 H 1.09006 * 110.21783 * 34.62438 * 16 14 13 18 18 C 1.54474 * 110.24704 * 272.69261 * 16 14 13 19 19 C 1.54631 * 101.76665 * 215.58322 * 18 16 14 20 20 C 1.51287 * 104.19193 * 24.80028 * 19 18 16 21 21 O 1.21283 * 124.93867 * 163.77091 * 20 19 18 22 22 N 1.34560 * 110.13888 * 343.67561 * 20 19 18 23 23 C 1.39922 * 124.42954 * 179.64728 * 22 20 19 24 24 C 1.38878 * 120.07223 * 294.72501 * 23 22 20 25 25 C 1.38113 * 119.92813 * 179.67602 * 24 23 22 26 26 C 1.38279 * 120.07276 * 0.62813 * 25 24 23 27 27 C 1.38286 * 120.13827 * 359.66993 * 26 25 24 28 28 C 1.38106 * 120.07340 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47401 * 300.00165 * 1 2 3 30 30 H 1.09005 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47084 * 60.00100 * 1 2 3 32 32 H 1.08999 * 109.47084 * 119.99900 * 2 1 3 33 33 H 1.09001 * 109.47401 * 239.99835 * 2 1 3 34 34 H 0.96994 * 120.00233 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00432 * 94.99437 * 13 3 2 36 36 H 1.09000 * 110.97128 * 333.70409 * 18 16 14 37 37 H 1.09003 * 110.97089 * 97.42687 * 18 16 14 38 38 H 1.08998 * 110.48178 * 143.47475 * 19 18 16 39 39 H 1.08999 * 110.48851 * 266.12286 * 19 18 16 40 40 H 1.07998 * 120.02868 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.96192 * 180.34128 * 25 24 23 42 42 H 1.07994 * 119.93018 * 179.69922 * 26 25 24 43 43 H 1.08007 * 119.96011 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.03632 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8814 -1.3817 10 1 6.5974 0.1474 -0.2348 11 1 6.3977 0.2179 -2.6508 12 1 6.4994 2.2816 -1.3821 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6327 0.4340 16 6 0.0365 3.3387 2.6544 17 1 0.9018 3.8185 3.1118 18 6 -0.5810 2.3102 3.6276 19 6 -1.6712 3.1539 4.3280 20 6 -1.9902 4.2478 3.3328 21 8 -2.9767 4.9525 3.3676 22 7 -1.0193 4.3270 2.4045 23 6 -1.0165 5.2327 1.3380 24 6 -1.9859 5.1444 0.3474 25 6 -1.9843 6.0442 -0.7005 26 6 -1.0112 7.0241 -0.7709 27 6 -0.0409 7.1108 0.2106 28 6 -0.0406 6.2181 1.2644 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.8292 -0.0612 -2.9497 35 1 2.2718 2.1232 1.9978 36 1 -1.0232 1.4753 3.0839 37 1 0.1605 1.9573 4.3444 38 1 -2.5553 2.5474 4.5246 39 1 -1.2867 3.5811 5.2542 40 1 -2.7430 4.3759 0.3990 41 1 -2.7412 5.9794 -1.4682 42 1 -1.0093 7.7234 -1.5938 43 1 0.7175 7.8776 0.1530 44 1 0.7172 6.2867 2.0308 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181954359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:05 Heat of formation + Delta-G solvation = -59.345026 kcal Electronic energy + Delta-G solvation = -27312.685096 eV Core-core repulsion = 23615.077550 eV Total energy + Delta-G solvation = -3697.607546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.27229 -40.28753 -39.57744 -37.57902 -36.65265 -34.39312 -33.96109 -32.81620 -31.91291 -30.01500 -29.77979 -28.34740 -25.03495 -24.24305 -23.77804 -23.29730 -22.02698 -21.15923 -20.66178 -19.27585 -18.49427 -18.04098 -17.26224 -17.13833 -16.83035 -16.44036 -16.19810 -15.89880 -15.62857 -15.35296 -14.74861 -14.66599 -14.52028 -14.42342 -14.17814 -14.12920 -13.57231 -13.52433 -13.39487 -13.15321 -12.90186 -12.80607 -12.62069 -12.51535 -12.23176 -12.18869 -12.07406 -11.97667 -11.55493 -11.16844 -11.02934 -10.78721 -10.51408 -10.28153 -9.91509 -9.62430 -9.33831 -8.13422 -6.30559 0.26513 0.42848 1.37803 1.47100 1.48152 1.55671 1.66066 1.94315 2.37219 2.60815 2.75809 3.16492 3.33834 3.50666 3.87021 3.94505 3.97468 4.00184 4.12794 4.19123 4.43409 4.46381 4.51024 4.57010 4.59073 4.61653 4.77389 4.79874 4.96446 5.02601 5.03336 5.09517 5.28268 5.33843 5.40684 5.46086 5.52097 5.57771 5.59123 5.64826 5.82309 5.92206 5.98415 6.07493 6.20347 6.78146 6.96192 7.06279 7.36923 7.61255 8.91384 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.004446 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.381219 B = 6295.876233 C = 7238.819280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.284 3.716 4 H -0.008 1.008 5 C -0.544 4.544 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.697 5.697 14 C 0.492 3.508 15 O -0.568 6.568 16 C 0.112 3.888 17 H 0.136 0.864 18 C -0.109 4.109 19 C -0.133 4.133 20 C 0.509 3.491 21 O -0.570 6.570 22 N -0.559 5.559 23 C 0.135 3.865 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.136 4.136 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.017 0.983 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.146 0.854 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 7.240 13.114 15.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.181 3.819 4 H 0.010 0.990 5 C -0.582 4.582 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.217 1.217 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.276 3.724 15 O -0.447 6.447 16 C 0.006 3.994 17 H 0.153 0.847 18 C -0.147 4.147 19 C -0.173 4.173 20 C 0.300 3.700 21 O -0.449 6.449 22 N -0.287 5.287 23 C 0.045 3.955 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.133 4.133 28 C -0.156 4.156 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.115 0.885 41 H 0.156 0.844 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.923 7.500 12.256 15.189 hybrid contribution 0.871 -0.266 -0.771 1.194 sum -4.052 7.235 11.485 14.165 Atomic orbital electron populations 1.21658 0.97143 0.98900 1.00107 1.21770 0.93497 0.99217 1.01369 1.18274 0.93422 0.88994 0.81245 0.99035 1.21552 0.91456 1.38642 1.06595 0.90765 1.25733 1.02995 0.94511 0.95136 1.70051 1.37058 1.38499 1.09890 0.85487 0.79514 0.78377 0.77495 1.18691 1.21652 1.19770 1.46161 1.15077 1.55901 1.17534 1.20987 0.82274 0.79349 0.89758 1.90720 1.52317 1.59984 1.41686 1.22067 0.92737 0.90538 0.94065 0.84702 1.22720 0.99206 0.95616 0.97136 1.22412 1.01919 0.94738 0.98217 1.22001 0.80607 0.84810 0.82584 1.90691 1.29152 1.48762 1.76249 1.45610 1.23704 1.33741 1.25665 1.17602 0.97556 0.91443 0.88893 1.21172 0.99231 0.98742 0.94282 1.21306 1.00063 0.95210 0.97698 1.21536 0.94374 0.98664 0.99729 1.21395 0.99208 0.99174 0.93533 1.21432 0.99120 0.94594 1.00433 0.93289 0.93879 0.96327 0.93509 0.91474 0.92784 0.75846 0.90687 0.83443 0.86178 0.83613 0.88489 0.84372 0.82959 0.82678 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.51 71.98 0.61 -4.57 16 2 C -0.12 -5.57 5.45 30.60 0.17 -5.40 16 3 C 0.28 13.67 2.24 44.25 0.10 13.77 16 4 H -0.01 -0.49 7.58 -2.39 -0.02 -0.51 16 5 C -0.54 -27.17 8.73 25.60 0.22 -26.95 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -51.35 11.29 21.45 0.24 -51.11 16 9 Si 0.97 40.58 29.54 68.60 2.03 42.61 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 N -0.70 -25.29 5.02 -446.09 -2.24 -27.53 16 14 C 0.49 17.22 5.15 87.66 0.45 17.68 16 15 O -0.57 -25.37 12.28 -3.03 -0.04 -25.41 16 16 C 0.11 2.70 3.63 44.70 0.16 2.86 16 17 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 18 C -0.11 -1.76 6.67 31.65 0.21 -1.55 16 19 C -0.13 -2.14 6.86 30.59 0.21 -1.93 16 20 C 0.51 14.63 7.91 87.88 0.69 15.32 16 21 O -0.57 -21.14 17.67 -3.04 -0.05 -21.20 16 22 N -0.56 -16.59 2.65 -609.15 -1.62 -18.20 16 23 C 0.14 4.57 4.12 38.16 0.16 4.73 16 24 C -0.11 -4.15 9.14 22.39 0.20 -3.95 16 25 C -0.12 -3.82 10.04 22.25 0.22 -3.59 16 26 C -0.13 -3.29 10.04 22.29 0.22 -3.07 16 27 C -0.11 -2.97 10.04 22.25 0.22 -2.75 16 28 C -0.14 -3.97 9.92 22.39 0.22 -3.75 16 29 H 0.05 1.96 5.65 -2.39 -0.01 1.95 16 30 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.02 0.87 7.85 -2.39 -0.02 0.85 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 3.59 5.95 -2.39 -0.01 3.58 16 34 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 35 H 0.41 11.71 8.54 -92.71 -0.79 10.92 16 36 H 0.07 1.51 7.91 -2.39 -0.02 1.49 16 37 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -76.05 362.19 3.07 -72.97 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.22 Total: 29.73 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.53 Total: -1.86 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.61 Total: -96.84 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -0.09 Total: -46.61 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -76.05 3.07 -72.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181954359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.626 kcal (2) G-P(sol) polarization free energy of solvation -76.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds