Wall clock time and date at job start Tue Mar 31 2020 10:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 H 1.09002 * 110.54067 * 303.83730 * 3 2 1 5 5 C 1.54634 * 110.48324 * 181.22828 * 3 2 1 6 6 C 1.54656 * 101.68121 * 216.30786 * 5 3 2 7 7 N 1.46764 * 105.38654 * 25.76727 * 6 5 3 8 8 C 1.46494 * 124.35315 * 162.85388 * 7 6 5 9 9 C 1.50705 * 109.47214 * 269.72708 * 8 7 6 10 10 O 1.21287 * 119.99830 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99737 * 179.97438 * 9 8 7 12 12 C 1.39939 * 119.99567 * 185.26649 * 11 9 8 13 13 C 1.39295 * 119.94778 * 33.60803 * 12 11 9 14 14 C 1.38485 * 120.42913 * 179.97438 * 13 12 11 15 15 C 1.37679 * 120.32214 * 359.78437 * 14 13 12 16 16 C 1.40738 * 119.88512 * 0.47386 * 15 14 13 17 17 C 1.41412 * 120.20952 * 179.78601 * 16 15 14 18 18 H 1.07999 * 120.00330 * 28.30303 * 17 16 15 19 19 C 1.39937 * 119.99781 * 208.30206 * 17 16 15 20 20 N 1.30832 * 119.99992 * 197.67035 * 19 17 16 21 21 Si 1.86798 * 120.00097 * 17.66912 * 19 17 16 22 22 H 1.48506 * 109.47123 * 270.00132 * 21 19 17 23 23 H 1.48502 * 109.47226 * 29.99853 * 21 19 17 24 24 H 1.48504 * 109.47177 * 150.00007 * 21 19 17 25 25 C 1.38247 * 119.94892 * 213.58421 * 12 11 9 26 26 C 1.34416 * 111.29611 * 342.58904 * 7 6 5 27 27 O 1.21287 * 124.94296 * 180.69739 * 26 7 6 28 28 H 1.08993 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47146 * 300.00734 * 1 2 3 30 30 H 1.09008 * 109.46681 * 59.99799 * 1 2 3 31 31 H 1.08996 * 109.47117 * 239.99702 * 2 1 3 32 32 H 1.08994 * 109.46626 * 119.99966 * 2 1 3 33 33 H 1.08997 * 110.96837 * 334.63905 * 5 3 2 34 34 H 1.08998 * 110.96791 * 98.37111 * 5 3 2 35 35 H 1.09003 * 110.39860 * 266.74038 * 6 5 3 36 36 H 1.09001 * 110.18469 * 144.68097 * 6 5 3 37 37 H 1.08997 * 109.47371 * 149.72490 * 8 7 6 38 38 H 1.08999 * 109.46893 * 29.72556 * 8 7 6 39 39 H 0.96992 * 120.00647 * 5.27297 * 11 9 8 40 40 H 1.08000 * 119.78235 * 359.97438 * 13 12 11 41 41 H 1.08003 * 119.84079 * 180.02562 * 14 13 12 42 42 H 1.08005 * 120.05786 * 180.23410 * 15 14 13 43 43 H 0.96997 * 119.99891 * 354.89408 * 20 19 17 44 44 H 1.07997 * 120.15460 * 0.04878 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6317 1.9925 -0.8478 5 6 3.5858 1.4700 -0.0311 6 6 3.8955 2.6894 0.8684 7 7 2.7418 2.8133 1.7671 8 6 2.7424 3.5870 3.0111 9 6 3.1692 2.7013 4.1533 10 8 3.4453 1.5382 3.9483 11 7 3.2442 3.2018 5.4024 12 6 3.7451 2.4122 6.4435 13 6 4.7537 1.4855 6.1901 14 6 5.2572 0.6994 7.2130 15 6 4.7687 0.8287 8.4938 16 6 3.7458 1.7569 8.7638 17 6 3.2359 1.8921 10.0759 18 1 3.8654 1.6716 10.9253 19 6 1.9156 2.3116 10.2736 20 7 1.5421 2.7674 11.4416 21 14 0.6866 2.2208 8.8698 22 1 0.7140 3.4933 8.1047 23 1 1.0447 1.0947 7.9704 24 1 -0.6760 2.0022 9.4182 25 6 3.2386 2.5535 7.7221 26 6 1.6828 2.1304 1.2991 27 8 0.5985 2.0743 1.8395 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0007 0.5542 0.3901 34 1 3.9528 1.6322 -1.0445 35 1 4.0012 3.5902 0.2639 36 1 4.8042 2.5114 1.4435 37 1 1.7394 3.9683 3.2023 38 1 3.4372 4.4218 2.9194 39 1 2.9508 4.1091 5.5798 40 1 5.1456 1.3794 5.1893 41 1 6.0395 -0.0158 7.0059 42 1 5.1671 0.2161 9.2891 43 1 2.1583 2.7459 12.1904 44 1 2.4563 3.2714 7.9194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183674417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:02 Heat of formation + Delta-G solvation = -54.795850 kcal Electronic energy + Delta-G solvation = -26319.545104 eV Core-core repulsion = 22622.134826 eV Total energy + Delta-G solvation = -3697.410279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90102 -39.61564 -37.47917 -36.45963 -34.87622 -34.38677 -33.41322 -31.47545 -30.19380 -29.09273 -27.36142 -26.99538 -24.85450 -22.80065 -22.23286 -21.62095 -21.26603 -19.69455 -19.28254 -18.14673 -17.56776 -16.94970 -16.71779 -15.89910 -15.43943 -15.25337 -14.85600 -14.37789 -14.07627 -13.98167 -13.83753 -13.64843 -13.50281 -13.27123 -12.88068 -12.78819 -12.70644 -12.52812 -12.20563 -11.86326 -11.81580 -11.47890 -11.36556 -11.04496 -10.94479 -10.87693 -10.75914 -10.49095 -9.98431 -9.85772 -9.58122 -9.48889 -9.36250 -9.02147 -8.75894 -7.72090 -7.30966 -7.14280 -4.55794 2.29044 2.41596 2.68813 2.76598 3.01564 3.20182 3.38957 3.57781 3.59226 4.02394 4.07769 4.23558 4.47548 4.55980 4.76451 4.83852 4.88983 5.01851 5.06131 5.16629 5.27559 5.30156 5.41165 5.45086 5.54651 5.65365 5.78582 5.89598 5.99202 6.08629 6.20978 6.30113 6.37661 6.45136 6.55252 6.69311 6.79945 6.95780 7.32661 7.36818 7.55443 7.65887 7.72586 7.87303 8.04519 8.09864 8.34586 8.49052 8.57373 8.78459 10.03470 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003486 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.241595 B = 8029.637579 C = 8660.332269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.119 4.119 4 H 0.107 0.893 5 C -0.127 4.127 6 C 0.105 3.895 7 N -0.604 5.604 8 C 0.108 3.892 9 C 0.488 3.512 10 O -0.509 6.509 11 N -0.670 5.670 12 C 0.176 3.824 13 C -0.232 4.232 14 C -0.073 4.073 15 C -0.220 4.220 16 C 0.111 3.889 17 C -0.518 4.518 18 H 0.077 0.923 19 C 0.044 3.956 20 N -0.820 5.820 21 Si 1.075 2.925 22 H -0.280 1.280 23 H -0.263 1.263 24 H -0.290 1.290 25 C -0.268 4.268 26 C 0.526 3.474 27 O -0.520 6.520 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.403 0.597 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.285 0.715 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 2.771 -22.885 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.141 4.141 4 H 0.125 0.875 5 C -0.165 4.165 6 C -0.018 4.018 7 N -0.337 5.337 8 C -0.019 4.019 9 C 0.273 3.727 10 O -0.383 6.383 11 N -0.315 5.315 12 C 0.084 3.916 13 C -0.253 4.253 14 C -0.092 4.092 15 C -0.239 4.239 16 C 0.107 3.893 17 C -0.547 4.547 18 H 0.095 0.905 19 C -0.175 4.175 20 N -0.443 5.443 21 Si 0.902 3.098 22 H -0.207 1.207 23 H -0.188 1.188 24 H -0.218 1.218 25 C -0.289 4.289 26 C 0.314 3.686 27 O -0.395 6.395 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.238 0.762 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.061 2.340 -23.033 23.176 hybrid contribution 1.651 0.220 0.848 1.869 sum 2.713 2.560 -22.185 22.497 Atomic orbital electron populations 1.21958 0.95044 1.01739 1.03467 1.21360 0.96988 0.93306 1.02525 1.21978 0.96756 0.98560 0.96765 0.87533 1.22717 0.94388 0.98877 1.00524 1.22129 0.89359 0.98442 0.91851 1.47779 1.13850 1.50845 1.21265 1.21196 1.04915 0.93307 0.82450 1.21159 0.78352 0.89123 0.84069 1.90718 1.47151 1.16772 1.83677 1.43536 1.63399 1.17031 1.07537 1.17445 0.93935 0.93861 0.86328 1.20286 1.02404 1.03930 0.98699 1.20530 0.98003 0.97488 0.93133 1.21072 1.04457 1.02820 0.95589 1.17512 0.90798 0.88485 0.92489 1.20597 0.98948 1.42190 0.92934 0.90507 1.27209 0.98929 0.89434 1.01947 1.70545 1.41635 1.29424 1.02722 0.83555 0.74109 0.78611 0.73566 1.20738 1.18760 1.21754 1.20870 1.07923 1.07396 0.92753 1.20863 0.83504 0.77892 0.86351 1.90678 1.23822 1.61284 1.63742 0.92971 0.89998 0.93210 0.91207 0.91375 0.89491 0.89224 0.90907 0.90129 0.86974 0.87150 0.76218 0.87659 0.88530 0.88391 0.90328 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.70 37.16 0.36 -1.43 16 2 C -0.10 -1.04 5.35 -26.73 -0.14 -1.18 16 3 C -0.12 -1.13 2.97 -90.63 -0.27 -1.40 16 4 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 5 C -0.13 -0.93 6.71 -25.00 -0.17 -1.10 16 6 C 0.11 0.86 7.35 -3.03 -0.02 0.84 16 7 N -0.60 -7.14 2.42 -173.68 -0.42 -7.56 16 8 C 0.11 1.25 6.42 -5.19 -0.03 1.22 16 9 C 0.49 8.19 7.63 -10.98 -0.08 8.10 16 10 O -0.51 -10.53 14.12 5.55 0.08 -10.46 16 11 N -0.67 -11.73 5.34 -9.91 -0.05 -11.79 16 12 C 0.18 3.91 6.26 -83.76 -0.52 3.39 16 13 C -0.23 -5.20 8.66 -39.10 -0.34 -5.54 16 14 C -0.07 -1.62 10.02 -39.69 -0.40 -2.02 16 15 C -0.22 -5.31 9.79 -38.84 -0.38 -5.69 16 16 C 0.11 2.88 5.14 -106.85 -0.55 2.33 16 17 C -0.52 -14.14 9.44 -37.74 -0.36 -14.50 16 18 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 19 C 0.04 1.17 5.42 -17.34 -0.09 1.08 16 20 N -0.82 -22.38 13.65 55.55 0.76 -21.62 16 21 Si 1.07 25.58 24.90 -169.99 -4.23 21.35 16 22 H -0.28 -6.18 6.43 56.52 0.36 -5.82 16 23 H -0.26 -6.52 7.02 56.52 0.40 -6.12 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.27 -6.51 7.18 -38.68 -0.28 -6.79 16 26 C 0.53 7.16 7.42 -10.86 -0.08 7.08 16 27 O -0.52 -9.06 15.02 5.55 0.08 -8.97 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.14 5.70 -51.93 -0.30 0.85 16 30 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.72 7.91 -51.93 -0.41 0.31 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.25 7.92 -51.93 -0.41 0.84 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 5.58 8.82 -40.82 -0.36 5.22 16 40 H 0.11 2.29 6.42 -52.49 -0.34 1.95 16 41 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.29 7.54 8.73 -40.82 -0.36 7.18 16 44 H 0.11 2.57 4.36 -52.49 -0.23 2.34 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -34.11 358.79 -8.05 -42.16 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.31 Total: 7.09 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.36 Total: -15.61 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.29 Total: -40.96 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.16 Total: -19.43 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.23 Total: 21.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.11 -8.05 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183674417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.634 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds