Wall clock time and date at job start Tue Mar 31 2020 10:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 H 1.09002 * 110.54067 * 303.83730 * 3 2 1 5 5 C 1.54634 * 110.48324 * 181.22828 * 3 2 1 6 6 C 1.54656 * 101.68121 * 216.30786 * 5 3 2 7 7 N 1.46764 * 105.38654 * 25.76727 * 6 5 3 8 8 C 1.46494 * 124.35315 * 162.85388 * 7 6 5 9 9 C 1.50705 * 109.47214 * 269.72708 * 8 7 6 10 10 O 1.21287 * 119.99830 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99737 * 179.97438 * 9 8 7 12 12 C 1.39939 * 119.99567 * 185.26649 * 11 9 8 13 13 C 1.39295 * 119.94778 * 33.60803 * 12 11 9 14 14 C 1.38485 * 120.42913 * 179.97438 * 13 12 11 15 15 C 1.37679 * 120.32214 * 359.78437 * 14 13 12 16 16 C 1.40738 * 119.88512 * 0.47386 * 15 14 13 17 17 C 1.41412 * 120.20952 * 179.78601 * 16 15 14 18 18 H 1.07999 * 120.00330 * 28.30303 * 17 16 15 19 19 C 1.39937 * 119.99781 * 208.30206 * 17 16 15 20 20 N 1.30832 * 119.99992 * 197.67035 * 19 17 16 21 21 Si 1.86798 * 120.00097 * 17.66912 * 19 17 16 22 22 H 1.48506 * 109.47123 * 270.00132 * 21 19 17 23 23 H 1.48502 * 109.47226 * 29.99853 * 21 19 17 24 24 H 1.48504 * 109.47177 * 150.00007 * 21 19 17 25 25 C 1.38247 * 119.94892 * 213.58421 * 12 11 9 26 26 C 1.34416 * 111.29611 * 342.58904 * 7 6 5 27 27 O 1.21287 * 124.94296 * 180.69739 * 26 7 6 28 28 H 1.08993 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47146 * 300.00734 * 1 2 3 30 30 H 1.09008 * 109.46681 * 59.99799 * 1 2 3 31 31 H 1.08996 * 109.47117 * 239.99702 * 2 1 3 32 32 H 1.08994 * 109.46626 * 119.99966 * 2 1 3 33 33 H 1.08997 * 110.96837 * 334.63905 * 5 3 2 34 34 H 1.08998 * 110.96791 * 98.37111 * 5 3 2 35 35 H 1.09003 * 110.39860 * 266.74038 * 6 5 3 36 36 H 1.09001 * 110.18469 * 144.68097 * 6 5 3 37 37 H 1.08997 * 109.47371 * 149.72490 * 8 7 6 38 38 H 1.08999 * 109.46893 * 29.72556 * 8 7 6 39 39 H 0.96992 * 120.00647 * 5.27297 * 11 9 8 40 40 H 1.08000 * 119.78235 * 359.97438 * 13 12 11 41 41 H 1.08003 * 119.84079 * 180.02562 * 14 13 12 42 42 H 1.08005 * 120.05786 * 180.23410 * 15 14 13 43 43 H 0.96997 * 119.99891 * 354.89408 * 20 19 17 44 44 H 1.07997 * 120.15460 * 0.04878 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6317 1.9925 -0.8478 5 6 3.5858 1.4700 -0.0311 6 6 3.8955 2.6894 0.8684 7 7 2.7418 2.8133 1.7671 8 6 2.7424 3.5870 3.0111 9 6 3.1692 2.7013 4.1533 10 8 3.4453 1.5382 3.9483 11 7 3.2442 3.2018 5.4024 12 6 3.7451 2.4122 6.4435 13 6 4.7537 1.4855 6.1901 14 6 5.2572 0.6994 7.2130 15 6 4.7687 0.8287 8.4938 16 6 3.7458 1.7569 8.7638 17 6 3.2359 1.8921 10.0759 18 1 3.8654 1.6716 10.9253 19 6 1.9156 2.3116 10.2736 20 7 1.5421 2.7674 11.4416 21 14 0.6866 2.2208 8.8698 22 1 0.7140 3.4933 8.1047 23 1 1.0447 1.0947 7.9704 24 1 -0.6760 2.0022 9.4182 25 6 3.2386 2.5535 7.7221 26 6 1.6828 2.1304 1.2991 27 8 0.5985 2.0743 1.8395 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0007 0.5542 0.3901 34 1 3.9528 1.6322 -1.0445 35 1 4.0012 3.5902 0.2639 36 1 4.8042 2.5114 1.4435 37 1 1.7394 3.9683 3.2023 38 1 3.4372 4.4218 2.9194 39 1 2.9508 4.1091 5.5798 40 1 5.1456 1.3794 5.1893 41 1 6.0395 -0.0158 7.0059 42 1 5.1671 0.2161 9.2891 43 1 2.1583 2.7459 12.1904 44 1 2.4563 3.2714 7.9194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183674417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:02 Heat of formation + Delta-G solvation = -77.285669 kcal Electronic energy + Delta-G solvation = -26320.520336 eV Core-core repulsion = 22622.134826 eV Total energy + Delta-G solvation = -3698.385511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90239 -40.99639 -39.20208 -37.43416 -36.17633 -35.63851 -35.26418 -32.41613 -32.08704 -30.59368 -28.28834 -27.94392 -26.82088 -23.79741 -23.45575 -23.19805 -22.32291 -21.35107 -20.27903 -20.02238 -18.78836 -18.10480 -17.71159 -17.38317 -16.96855 -16.48117 -16.15844 -15.94171 -15.56010 -15.21105 -15.05544 -14.80399 -14.64332 -14.55523 -14.33599 -14.08297 -13.89470 -13.58386 -13.42773 -13.23165 -12.96822 -12.74300 -12.63122 -12.55804 -12.32045 -12.09205 -11.92366 -11.78692 -11.65589 -11.56366 -11.22256 -10.98578 -10.95756 -10.52936 -9.78279 -9.65334 -9.30642 -8.95436 -6.63771 0.57624 0.77478 1.26615 1.40314 1.42431 1.63814 1.69064 1.90032 2.08037 2.31711 2.61142 3.33987 3.42813 3.58592 3.67661 3.83420 4.10207 4.15133 4.22715 4.25225 4.34240 4.42362 4.47465 4.53920 4.63712 4.70775 4.75572 4.78109 4.90832 4.93767 4.98586 5.03051 5.10878 5.17183 5.32902 5.38601 5.42587 5.51384 5.56847 5.62921 5.74694 5.81793 6.05529 6.08808 6.33821 6.52085 6.57822 6.76935 7.11351 7.17275 7.96707 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003486 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.241595 B = 8029.637579 C = 8660.332269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.114 4.114 4 H 0.133 0.867 5 C -0.119 4.119 6 C 0.099 3.901 7 N -0.608 5.608 8 C 0.113 3.887 9 C 0.486 3.514 10 O -0.552 6.552 11 N -0.665 5.665 12 C 0.178 3.822 13 C -0.228 4.228 14 C -0.070 4.070 15 C -0.237 4.237 16 C 0.089 3.911 17 C -0.547 4.547 18 H 0.053 0.947 19 C 0.017 3.983 20 N -0.843 5.843 21 Si 1.102 2.898 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.280 1.280 25 C -0.277 4.277 26 C 0.507 3.493 27 O -0.571 6.571 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.161 0.839 39 H 0.422 0.578 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.280 0.720 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 3.949 -27.165 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.141 4.141 3 C -0.136 4.136 4 H 0.151 0.849 5 C -0.157 4.157 6 C -0.023 4.023 7 N -0.340 5.340 8 C -0.013 4.013 9 C 0.273 3.727 10 O -0.429 6.429 11 N -0.312 5.312 12 C 0.085 3.915 13 C -0.249 4.249 14 C -0.088 4.088 15 C -0.256 4.256 16 C 0.086 3.914 17 C -0.577 4.577 18 H 0.071 0.929 19 C -0.197 4.197 20 N -0.468 5.468 21 Si 0.925 3.075 22 H -0.176 1.176 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.298 4.298 26 C 0.297 3.703 27 O -0.450 6.450 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.178 0.822 39 H 0.260 0.740 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.075 3.573 -27.332 27.642 hybrid contribution 1.494 -0.229 2.026 2.527 sum 3.569 3.344 -25.306 25.774 Atomic orbital electron populations 1.21922 0.95971 1.01687 1.02541 1.21372 0.96181 0.94029 1.02501 1.22059 0.98465 0.97675 0.95357 0.84913 1.22771 0.92386 0.97996 1.02503 1.22459 0.87661 1.00476 0.91656 1.48066 1.14590 1.50062 1.21241 1.21359 1.06360 0.93197 0.80430 1.22197 0.76760 0.89204 0.84512 1.90697 1.49001 1.18901 1.84258 1.43554 1.63117 1.17535 1.06953 1.17535 0.93261 0.93869 0.86881 1.20603 1.01826 1.03302 0.99138 1.20883 0.98209 0.97617 0.92111 1.21246 1.04565 1.03012 0.96824 1.17722 0.91736 0.89425 0.92503 1.20581 0.99452 1.44613 0.93084 0.92925 1.28018 0.99784 0.88867 1.03019 1.70588 1.41635 1.31505 1.03032 0.83185 0.73189 0.79162 0.71937 1.17603 1.20773 1.20705 1.20955 1.08129 1.07380 0.93341 1.21729 0.83172 0.77763 0.87656 1.90651 1.25939 1.62961 1.65484 0.92632 0.93551 0.91398 0.88079 0.94374 0.90999 0.85244 0.87129 0.90574 0.86403 0.82153 0.74010 0.86542 0.85234 0.88018 0.90920 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.70 71.98 0.70 -2.75 16 2 C -0.10 -1.89 5.35 30.60 0.16 -1.73 16 3 C -0.11 -1.84 2.97 -10.80 -0.03 -1.88 16 4 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.12 -1.28 6.71 31.72 0.21 -1.06 16 6 C 0.10 1.20 7.35 86.89 0.64 1.84 16 7 N -0.61 -12.60 2.42 -821.98 -1.99 -14.58 16 8 C 0.11 2.25 6.42 85.64 0.55 2.80 16 9 C 0.49 15.19 7.63 87.66 0.67 15.86 16 10 O -0.55 -22.08 14.12 -3.05 -0.04 -22.12 16 11 N -0.66 -21.75 5.34 -303.64 -1.62 -23.37 16 12 C 0.18 7.65 6.26 38.10 0.24 7.89 16 13 C -0.23 -9.80 8.66 22.58 0.20 -9.61 16 14 C -0.07 -3.00 10.02 22.20 0.22 -2.78 16 15 C -0.24 -11.49 9.79 22.75 0.22 -11.27 16 16 C 0.09 4.72 5.14 -21.31 -0.11 4.61 16 17 C -0.55 -31.12 9.44 23.46 0.22 -30.89 16 18 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 19 C 0.02 0.95 5.42 85.25 0.46 1.41 16 20 N -0.84 -47.40 13.65 21.83 0.30 -47.11 16 21 Si 1.10 52.01 24.90 68.60 1.71 53.71 16 22 H -0.25 -10.51 6.43 99.48 0.64 -9.87 16 23 H -0.28 -14.07 7.02 99.48 0.70 -13.37 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C -0.28 -13.32 7.18 22.85 0.16 -13.15 16 26 C 0.51 13.04 7.42 87.90 0.65 13.69 16 27 O -0.57 -20.00 15.02 -3.05 -0.05 -20.04 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.33 5.70 -2.39 -0.01 1.31 16 30 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.01 7.91 -2.39 -0.02 0.99 16 34 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 2.31 7.92 -2.39 -0.02 2.29 16 38 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 10.48 8.82 -92.71 -0.82 9.66 16 40 H 0.12 4.79 6.42 -2.91 -0.02 4.77 16 41 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.28 15.49 8.73 -92.71 -0.81 14.68 16 44 H 0.11 5.20 4.36 -2.91 -0.01 5.19 16 Total: -1.00 -78.71 358.79 3.57 -75.14 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.09 Total: 25.39 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 5.17 Total: -27.01 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -3.31 Total: -85.06 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.09 Total: -42.16 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 1.71 Total: 53.71 kcal Total: -78.71 3.57 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183674417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds