Wall clock time and date at job start Tue Mar 31 2020 10:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 H 1.09003 * 110.42948 * 56.08359 * 3 2 1 5 5 C 1.54627 * 110.59960 * 178.70487 * 3 2 1 6 6 C 1.54657 * 101.68466 * 93.71742 * 5 3 2 7 7 N 1.46765 * 105.38112 * 25.76808 * 6 5 3 8 8 C 1.46504 * 124.35135 * 162.85527 * 7 6 5 9 9 C 1.50699 * 109.46869 * 269.72535 * 8 7 6 10 10 O 1.21287 * 119.99981 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00247 * 179.97438 * 9 8 7 12 12 C 1.39929 * 119.99949 * 185.26823 * 11 9 8 13 13 C 1.39294 * 119.95265 * 33.59009 * 12 11 9 14 14 C 1.38480 * 120.42826 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32538 * 359.75883 * 14 13 12 16 16 C 1.40743 * 119.88312 * 0.54000 * 15 14 13 17 17 C 1.41404 * 120.20600 * 179.71925 * 16 15 14 18 18 H 1.07990 * 120.00775 * 28.28887 * 17 16 15 19 19 C 1.39933 * 119.99247 * 208.28662 * 17 16 15 20 20 N 1.30838 * 119.99625 * 197.66040 * 19 17 16 21 21 Si 1.86796 * 120.00730 * 17.65813 * 19 17 16 22 22 H 1.48495 * 109.47210 * 270.00379 * 21 19 17 23 23 H 1.48507 * 109.46823 * 29.99816 * 21 19 17 24 24 H 1.48494 * 109.47518 * 149.99564 * 21 19 17 25 25 C 1.38249 * 119.94311 * 213.60887 * 12 11 9 26 26 C 1.34422 * 111.30110 * 342.58439 * 7 6 5 27 27 O 1.21278 * 124.94097 * 180.69217 * 26 7 6 28 28 H 1.09001 * 109.46919 * 60.00303 * 1 2 3 29 29 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47240 * 299.99781 * 1 2 3 31 31 H 1.08993 * 109.47115 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46919 * 119.99697 * 2 1 3 33 33 H 1.08992 * 110.96748 * 212.05611 * 5 3 2 34 34 H 1.09004 * 110.96880 * 335.78447 * 5 3 2 35 35 H 1.09004 * 110.40226 * 266.74128 * 6 5 3 36 36 H 1.08999 * 110.18036 * 144.67929 * 6 5 3 37 37 H 1.09001 * 109.47544 * 149.72760 * 8 7 6 38 38 H 1.08999 * 109.47015 * 29.71668 * 8 7 6 39 39 H 0.97001 * 119.99755 * 5.26918 * 11 9 8 40 40 H 1.07998 * 119.78210 * 359.97438 * 13 12 11 41 41 H 1.08007 * 119.83532 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05931 * 180.27985 * 15 14 13 43 43 H 0.96997 * 120.00015 * 354.88775 * 20 19 17 44 44 H 1.07992 * 120.16376 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6295 1.9913 0.8477 5 6 3.5856 1.4731 0.0327 6 6 3.9290 1.5661 -1.4724 7 7 2.7603 2.1937 -2.1002 8 6 2.7657 2.8050 -3.4316 9 6 3.1225 4.2643 -3.3128 10 8 3.3494 4.7464 -2.2233 11 7 3.1894 5.0338 -4.4174 12 6 3.6272 6.3594 -4.3211 13 6 4.5976 6.7049 -3.3834 14 6 5.0384 8.0136 -3.2799 15 6 4.5253 8.9874 -4.1071 16 6 3.5397 8.6544 -5.0550 17 6 3.0038 9.6502 -5.9039 18 1 3.6007 10.5090 -6.1730 19 6 1.6997 9.5228 -6.3953 20 7 1.3183 10.2288 -7.4287 21 14 0.5036 8.3450 -5.5760 22 1 0.6092 7.0085 -6.2145 23 1 0.8319 8.2310 -4.1321 24 1 -0.8810 8.8591 -5.7296 25 6 3.0956 7.3241 -5.1565 26 6 1.6827 2.1303 -1.2992 27 8 0.5839 2.5615 -1.5776 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9471 2.3473 0.5741 34 1 3.9849 0.5559 0.4657 35 1 4.0914 0.5713 -1.8873 36 1 4.8138 2.1856 -1.6186 37 1 1.7769 2.7081 -3.8800 38 1 3.5005 2.3013 -4.0597 39 1 2.9341 4.6687 -5.2790 40 1 5.0088 5.9472 -2.7328 41 1 5.7915 8.2708 -2.5497 42 1 4.8754 10.0058 -4.0258 43 1 1.9137 10.8938 -7.8083 44 1 2.3433 7.0572 -5.8839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183674418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:07 Heat of formation + Delta-G solvation = -56.034304 kcal Electronic energy + Delta-G solvation = -26208.541222 eV Core-core repulsion = 22511.077240 eV Total energy + Delta-G solvation = -3697.463982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93710 -39.62401 -37.47386 -36.52622 -34.83532 -34.37527 -33.41191 -31.52900 -30.19423 -29.12621 -27.34507 -27.03544 -24.85370 -23.11513 -22.18184 -21.61834 -21.25098 -19.69868 -19.40188 -18.14286 -17.43962 -17.03106 -16.18986 -15.91336 -15.79662 -15.27695 -14.91225 -14.48062 -14.19389 -14.01168 -13.92041 -13.59812 -13.43319 -13.23075 -13.02567 -12.85955 -12.70578 -12.45722 -12.22004 -11.95595 -11.86252 -11.60089 -11.47501 -11.10560 -10.92154 -10.87510 -10.75677 -10.48986 -9.98227 -9.85718 -9.74195 -9.48666 -9.36040 -9.02016 -8.75439 -7.71971 -7.30856 -7.14190 -4.55663 2.29223 2.43407 2.68931 2.74317 3.01653 3.20463 3.39273 3.58286 3.59561 4.02597 4.05302 4.20099 4.47727 4.56065 4.66916 4.82534 4.85565 4.93044 5.05689 5.12093 5.16432 5.28473 5.41146 5.41567 5.48065 5.58580 5.69579 5.76531 5.88031 5.99345 6.10129 6.23064 6.30278 6.45273 6.55410 6.69447 6.80063 6.94643 7.32782 7.36894 7.55522 7.66021 7.72673 7.87356 8.04387 8.09097 8.34656 8.49124 8.57454 8.78535 10.03525 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.003320 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.004005 B = 8430.918348 C = 9308.837706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.122 4.122 4 H 0.106 0.894 5 C -0.127 4.127 6 C 0.106 3.894 7 N -0.603 5.603 8 C 0.108 3.892 9 C 0.488 3.512 10 O -0.510 6.510 11 N -0.670 5.670 12 C 0.177 3.823 13 C -0.232 4.232 14 C -0.073 4.073 15 C -0.220 4.220 16 C 0.110 3.890 17 C -0.517 4.517 18 H 0.077 0.923 19 C 0.043 3.957 20 N -0.820 5.820 21 Si 1.075 2.925 22 H -0.280 1.280 23 H -0.263 1.263 24 H -0.290 1.290 25 C -0.268 4.268 26 C 0.528 3.472 27 O -0.523 6.523 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.403 0.597 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.285 0.715 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -21.723 9.871 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.141 4.141 3 C -0.143 4.143 4 H 0.124 0.876 5 C -0.165 4.165 6 C -0.017 4.017 7 N -0.337 5.337 8 C -0.019 4.019 9 C 0.273 3.727 10 O -0.384 6.384 11 N -0.315 5.315 12 C 0.084 3.916 13 C -0.253 4.253 14 C -0.092 4.092 15 C -0.239 4.239 16 C 0.107 3.893 17 C -0.546 4.546 18 H 0.095 0.905 19 C -0.175 4.175 20 N -0.443 5.443 21 Si 0.902 3.098 22 H -0.207 1.207 23 H -0.188 1.188 24 H -0.218 1.218 25 C -0.290 4.290 26 C 0.316 3.684 27 O -0.398 6.398 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.238 0.762 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.808 -21.698 10.264 24.071 hybrid contribution 1.616 0.763 -0.583 1.880 sum 3.424 -20.934 9.681 23.317 Atomic orbital electron populations 1.21845 0.95012 1.01556 1.03248 1.21376 0.96804 0.93346 1.02541 1.22019 0.96919 0.98160 0.97251 0.87592 1.22694 0.94239 1.03968 0.95605 1.22123 0.88883 0.97699 0.93015 1.47764 1.11981 1.57269 1.16655 1.21196 1.05170 0.90644 0.84850 1.21161 0.77915 0.88882 0.84737 1.90718 1.47212 1.74012 1.26415 1.43536 1.65689 1.11915 1.10354 1.17443 0.94538 0.81685 0.97892 1.20283 1.03491 0.96769 1.04774 1.20532 0.98052 0.92903 0.97672 1.21073 1.04996 0.97770 1.00101 1.17517 0.90764 0.91232 0.89799 1.20591 1.00300 1.07319 1.26426 0.90507 1.27216 0.98548 0.99197 0.92583 1.70548 1.41876 1.17575 1.14319 0.83548 0.74158 0.74254 0.77845 1.20737 1.18767 1.21762 1.20869 1.08444 0.92828 1.06823 1.20803 0.83721 0.78006 0.85867 1.90722 1.23199 1.48595 1.77276 0.91566 0.92696 0.92466 0.91695 0.90751 0.89551 0.89109 0.90948 0.90130 0.86985 0.87130 0.76212 0.87661 0.88525 0.88389 0.90329 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.71 37.16 0.36 -1.03 16 2 C -0.10 -0.76 5.36 -26.73 -0.14 -0.90 16 3 C -0.12 -1.16 2.97 -90.63 -0.27 -1.43 16 4 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.13 -0.93 6.72 -25.00 -0.17 -1.10 16 6 C 0.11 0.87 7.35 -3.03 -0.02 0.85 16 7 N -0.60 -7.18 2.42 -173.67 -0.42 -7.60 16 8 C 0.11 1.26 6.42 -5.19 -0.03 1.23 16 9 C 0.49 8.23 7.63 -10.98 -0.08 8.15 16 10 O -0.51 -10.61 14.12 5.55 0.08 -10.53 16 11 N -0.67 -11.77 5.34 -9.91 -0.05 -11.83 16 12 C 0.18 3.93 6.26 -83.76 -0.52 3.40 16 13 C -0.23 -5.22 8.66 -39.10 -0.34 -5.56 16 14 C -0.07 -1.62 10.01 -39.69 -0.40 -2.02 16 15 C -0.22 -5.32 9.79 -38.84 -0.38 -5.70 16 16 C 0.11 2.88 5.14 -106.85 -0.55 2.33 16 17 C -0.52 -14.15 9.44 -37.74 -0.36 -14.50 16 18 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 19 C 0.04 1.17 5.42 -17.34 -0.09 1.07 16 20 N -0.82 -22.39 13.65 55.55 0.76 -21.63 16 21 Si 1.07 25.63 24.89 -169.99 -4.23 21.39 16 22 H -0.28 -6.19 6.43 56.52 0.36 -5.83 16 23 H -0.26 -6.54 7.02 56.52 0.40 -6.14 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.27 -6.53 7.18 -38.68 -0.28 -6.81 16 26 C 0.53 7.28 6.91 -10.86 -0.08 7.21 16 27 O -0.52 -9.34 16.34 5.56 0.09 -9.25 16 28 H 0.07 0.75 6.60 -51.93 -0.34 0.41 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.41 7.91 -51.93 -0.41 0.00 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.26 7.92 -51.93 -0.41 0.85 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.40 5.59 8.82 -40.82 -0.36 5.23 16 40 H 0.11 2.29 6.41 -52.49 -0.34 1.96 16 41 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.29 7.55 8.73 -40.82 -0.36 7.19 16 44 H 0.11 2.58 4.36 -52.49 -0.23 2.35 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -34.46 360.51 -8.06 -42.52 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.36 Total: 6.32 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.35 Total: -14.82 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.29 Total: -41.06 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.17 Total: -19.78 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.23 Total: 21.39 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.46 -8.06 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183674418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds