Wall clock time and date at job start Tue Mar 31 2020 10:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 H 1.09003 * 110.42948 * 56.08359 * 3 2 1 5 5 C 1.54627 * 110.59960 * 178.70487 * 3 2 1 6 6 C 1.54657 * 101.68466 * 93.71742 * 5 3 2 7 7 N 1.46765 * 105.38112 * 25.76808 * 6 5 3 8 8 C 1.46504 * 124.35135 * 162.85527 * 7 6 5 9 9 C 1.50699 * 109.46869 * 269.72535 * 8 7 6 10 10 O 1.21287 * 119.99981 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00247 * 179.97438 * 9 8 7 12 12 C 1.39929 * 119.99949 * 185.26823 * 11 9 8 13 13 C 1.39294 * 119.95265 * 33.59009 * 12 11 9 14 14 C 1.38480 * 120.42826 * 179.97438 * 13 12 11 15 15 C 1.37685 * 120.32538 * 359.75883 * 14 13 12 16 16 C 1.40743 * 119.88312 * 0.54000 * 15 14 13 17 17 C 1.41404 * 120.20600 * 179.71925 * 16 15 14 18 18 H 1.07990 * 120.00775 * 28.28887 * 17 16 15 19 19 C 1.39933 * 119.99247 * 208.28662 * 17 16 15 20 20 N 1.30838 * 119.99625 * 197.66040 * 19 17 16 21 21 Si 1.86796 * 120.00730 * 17.65813 * 19 17 16 22 22 H 1.48495 * 109.47210 * 270.00379 * 21 19 17 23 23 H 1.48507 * 109.46823 * 29.99816 * 21 19 17 24 24 H 1.48494 * 109.47518 * 149.99564 * 21 19 17 25 25 C 1.38249 * 119.94311 * 213.60887 * 12 11 9 26 26 C 1.34422 * 111.30110 * 342.58439 * 7 6 5 27 27 O 1.21278 * 124.94097 * 180.69217 * 26 7 6 28 28 H 1.09001 * 109.46919 * 60.00303 * 1 2 3 29 29 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47240 * 299.99781 * 1 2 3 31 31 H 1.08993 * 109.47115 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46919 * 119.99697 * 2 1 3 33 33 H 1.08992 * 110.96748 * 212.05611 * 5 3 2 34 34 H 1.09004 * 110.96880 * 335.78447 * 5 3 2 35 35 H 1.09004 * 110.40226 * 266.74128 * 6 5 3 36 36 H 1.08999 * 110.18036 * 144.67929 * 6 5 3 37 37 H 1.09001 * 109.47544 * 149.72760 * 8 7 6 38 38 H 1.08999 * 109.47015 * 29.71668 * 8 7 6 39 39 H 0.97001 * 119.99755 * 5.26918 * 11 9 8 40 40 H 1.07998 * 119.78210 * 359.97438 * 13 12 11 41 41 H 1.08007 * 119.83532 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05931 * 180.27985 * 15 14 13 43 43 H 0.96997 * 120.00015 * 354.88775 * 20 19 17 44 44 H 1.07992 * 120.16376 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6295 1.9913 0.8477 5 6 3.5856 1.4731 0.0327 6 6 3.9290 1.5661 -1.4724 7 7 2.7603 2.1937 -2.1002 8 6 2.7657 2.8050 -3.4316 9 6 3.1225 4.2643 -3.3128 10 8 3.3494 4.7464 -2.2233 11 7 3.1894 5.0338 -4.4174 12 6 3.6272 6.3594 -4.3211 13 6 4.5976 6.7049 -3.3834 14 6 5.0384 8.0136 -3.2799 15 6 4.5253 8.9874 -4.1071 16 6 3.5397 8.6544 -5.0550 17 6 3.0038 9.6502 -5.9039 18 1 3.6007 10.5090 -6.1730 19 6 1.6997 9.5228 -6.3953 20 7 1.3183 10.2288 -7.4287 21 14 0.5036 8.3450 -5.5760 22 1 0.6092 7.0085 -6.2145 23 1 0.8319 8.2310 -4.1321 24 1 -0.8810 8.8591 -5.7296 25 6 3.0956 7.3241 -5.1565 26 6 1.6827 2.1303 -1.2992 27 8 0.5839 2.5615 -1.5776 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9471 2.3473 0.5741 34 1 3.9849 0.5559 0.4657 35 1 4.0914 0.5713 -1.8873 36 1 4.8138 2.1856 -1.6186 37 1 1.7769 2.7081 -3.8800 38 1 3.5005 2.3013 -4.0597 39 1 2.9341 4.6687 -5.2790 40 1 5.0088 5.9472 -2.7328 41 1 5.7915 8.2708 -2.5497 42 1 4.8754 10.0058 -4.0258 43 1 1.9137 10.8938 -7.8083 44 1 2.3433 7.0572 -5.8839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183674418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:06 Heat of formation + Delta-G solvation = -78.850239 kcal Electronic energy + Delta-G solvation = -26209.530595 eV Core-core repulsion = 22511.077240 eV Total energy + Delta-G solvation = -3698.453355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93605 -41.01636 -39.20299 -37.52215 -36.17997 -35.52589 -35.26398 -32.38615 -32.08688 -30.62358 -28.29634 -27.95388 -26.82127 -23.85078 -23.48715 -23.31341 -22.21183 -21.34977 -20.38883 -20.04079 -18.76966 -18.11143 -17.55697 -17.11644 -16.91021 -16.65821 -16.21437 -16.02838 -15.52759 -15.27849 -15.11640 -14.88537 -14.68563 -14.52868 -14.27462 -13.99125 -13.92771 -13.72849 -13.43395 -13.16467 -12.95084 -12.74191 -12.59653 -12.51681 -12.32281 -12.29043 -11.92256 -11.72428 -11.58892 -11.54575 -11.22380 -10.98778 -10.95757 -10.69725 -9.78986 -9.65486 -9.30650 -8.95554 -6.63709 0.57444 0.77459 1.26799 1.39850 1.42468 1.63332 1.69187 1.86396 2.08148 2.31752 2.61144 3.32711 3.42722 3.55020 3.66099 3.88319 4.04500 4.12909 4.22771 4.24590 4.32929 4.43503 4.47592 4.55939 4.63691 4.68364 4.77772 4.78386 4.90577 4.93660 4.98512 5.05832 5.11172 5.19164 5.27784 5.38562 5.43004 5.44706 5.56684 5.62735 5.74704 5.81790 6.05464 6.06333 6.33713 6.51659 6.57795 6.76887 7.09080 7.15579 7.96695 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.003320 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.004005 B = 8430.918348 C = 9308.837706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.095 4.095 3 C -0.120 4.120 4 H 0.095 0.905 5 C -0.119 4.119 6 C 0.099 3.901 7 N -0.606 5.606 8 C 0.112 3.888 9 C 0.486 3.514 10 O -0.552 6.552 11 N -0.665 5.665 12 C 0.178 3.822 13 C -0.227 4.227 14 C -0.070 4.070 15 C -0.237 4.237 16 C 0.089 3.911 17 C -0.547 4.547 18 H 0.053 0.947 19 C 0.017 3.983 20 N -0.843 5.843 21 Si 1.103 2.897 22 H -0.251 1.251 23 H -0.282 1.282 24 H -0.280 1.280 25 C -0.277 4.277 26 C 0.511 3.489 27 O -0.578 6.578 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.162 0.838 39 H 0.422 0.578 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.280 0.720 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -25.826 11.146 28.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.133 4.133 3 C -0.141 4.141 4 H 0.113 0.887 5 C -0.156 4.156 6 C -0.022 4.022 7 N -0.338 5.338 8 C -0.014 4.014 9 C 0.274 3.726 10 O -0.429 6.429 11 N -0.311 5.311 12 C 0.085 3.915 13 C -0.248 4.248 14 C -0.088 4.088 15 C -0.256 4.256 16 C 0.085 3.915 17 C -0.577 4.577 18 H 0.071 0.929 19 C -0.197 4.197 20 N -0.467 5.467 21 Si 0.926 3.074 22 H -0.176 1.176 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.298 4.298 26 C 0.300 3.700 27 O -0.457 6.457 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.179 0.821 39 H 0.260 0.740 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.120 0.880 43 H 0.091 0.909 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.172 -25.847 11.505 28.469 hybrid contribution 1.349 1.963 -0.828 2.521 sum 4.521 -23.884 10.678 26.550 Atomic orbital electron populations 1.21846 0.96560 1.02020 1.01387 1.21401 0.95365 0.92012 1.04496 1.22075 0.98672 0.98943 0.94455 0.88663 1.22743 0.92202 1.05373 0.95303 1.22463 0.87187 0.99153 0.93410 1.48041 1.12711 1.56390 1.16620 1.21366 1.06890 0.87172 0.85930 1.22181 0.76217 0.90664 0.83567 1.90696 1.49069 1.75202 1.27943 1.43550 1.65415 1.10203 1.11960 1.17531 0.93721 0.83572 0.96721 1.20602 1.02835 0.97107 1.04295 1.20888 0.98106 0.92431 0.97413 1.21248 1.05149 0.98731 1.00508 1.17731 0.91653 0.91851 0.90225 1.20573 1.00923 1.07601 1.28577 0.92924 1.28027 0.99317 0.99919 0.92474 1.70590 1.41961 1.18731 1.15468 0.83176 0.73338 0.74764 0.76145 1.17602 1.20785 1.20721 1.20958 1.08689 0.92680 1.07504 1.21656 0.83351 0.77565 0.87388 1.90682 1.25433 1.51007 1.78600 0.94766 0.91001 0.93040 0.90553 0.87741 0.90854 0.85265 0.87196 0.90394 0.86468 0.82052 0.73994 0.86516 0.85209 0.88010 0.90925 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.71 71.98 0.70 -1.91 16 2 C -0.10 -1.10 5.36 30.60 0.16 -0.93 16 3 C -0.12 -2.03 2.97 -10.80 -0.03 -2.06 16 4 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 5 C -0.12 -1.31 6.72 31.71 0.21 -1.09 16 6 C 0.10 1.22 7.35 86.89 0.64 1.86 16 7 N -0.61 -12.71 2.42 -821.95 -1.99 -14.70 16 8 C 0.11 2.26 6.42 85.63 0.55 2.81 16 9 C 0.49 15.23 7.63 87.66 0.67 15.90 16 10 O -0.55 -22.12 14.12 -3.05 -0.04 -22.17 16 11 N -0.66 -21.75 5.34 -303.64 -1.62 -23.37 16 12 C 0.18 7.64 6.26 38.10 0.24 7.88 16 13 C -0.23 -9.78 8.66 22.58 0.20 -9.58 16 14 C -0.07 -3.00 10.01 22.20 0.22 -2.78 16 15 C -0.24 -11.48 9.79 22.75 0.22 -11.26 16 16 C 0.09 4.68 5.14 -21.31 -0.11 4.57 16 17 C -0.55 -31.08 9.44 23.46 0.22 -30.86 16 18 H 0.05 3.13 8.06 -2.92 -0.02 3.11 16 19 C 0.02 0.92 5.42 85.25 0.46 1.38 16 20 N -0.84 -47.41 13.65 21.82 0.30 -47.11 16 21 Si 1.10 52.04 24.89 68.60 1.71 53.75 16 22 H -0.25 -10.51 6.43 99.48 0.64 -9.87 16 23 H -0.28 -14.08 7.02 99.48 0.70 -13.38 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.28 -13.33 7.18 22.85 0.16 -13.17 16 26 C 0.51 13.47 6.91 87.90 0.61 14.07 16 27 O -0.58 -20.92 16.34 -3.02 -0.05 -20.97 16 28 H 0.03 0.77 6.60 -2.39 -0.02 0.76 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.13 0.46 7.91 -2.38 -0.02 0.44 16 35 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.12 2.33 7.92 -2.39 -0.02 2.31 16 38 H 0.16 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.42 10.48 8.82 -92.71 -0.82 9.66 16 40 H 0.12 4.79 6.41 -2.91 -0.02 4.77 16 41 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.28 15.49 8.73 -92.71 -0.81 14.68 16 44 H 0.11 5.21 4.36 -2.91 -0.01 5.19 16 Total: -1.00 -79.18 360.51 3.52 -75.67 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.09 Total: 24.05 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 5.13 Total: -25.15 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -3.31 Total: -85.17 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.09 Total: -43.14 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 1.71 Total: 53.75 kcal Total: -79.18 3.52 -75.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183674418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.185 kcal (2) G-P(sol) polarization free energy of solvation -79.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds