Wall clock time and date at job start Tue Mar 31 2020 11:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47118 * 2 1 4 4 H 1.09001 * 109.47141 * 304.90466 * 3 2 1 5 5 C 1.50700 * 109.47472 * 184.90080 * 3 2 1 6 6 H 1.07999 * 120.00024 * 245.45761 * 5 3 2 7 7 C 1.37871 * 119.99591 * 65.45371 * 5 3 2 8 8 N 1.31523 * 120.00353 * 9.47177 * 7 5 3 9 9 Si 1.86805 * 120.00013 * 189.47235 * 7 5 3 10 10 H 1.48495 * 109.47088 * 84.99280 * 9 7 5 11 11 H 1.48500 * 109.47055 * 204.99629 * 9 7 5 12 12 H 1.48500 * 109.46679 * 324.99562 * 9 7 5 13 13 N 1.46502 * 109.46638 * 64.90218 * 3 2 1 14 14 C 1.34777 * 119.99978 * 274.99731 * 13 3 2 15 15 O 1.21284 * 120.00293 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99819 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47286 * 304.99903 * 16 14 13 18 18 O 1.42901 * 109.47041 * 185.00017 * 16 14 13 19 19 C 1.53000 * 109.47205 * 65.00395 * 16 14 13 20 20 C 1.50692 * 109.47409 * 184.99959 * 19 16 14 21 21 C 1.34238 * 126.50203 * 264.69302 * 20 19 16 22 22 N 1.36833 * 109.93299 * 179.83062 * 21 20 19 23 23 H 0.96994 * 125.06367 * 180.18308 * 22 21 20 24 24 C 1.37691 * 109.86912 * 0.44212 * 22 21 20 25 25 C 1.39124 * 133.50588 * 179.71674 * 24 22 21 26 26 C 1.37752 * 119.77891 * 180.02562 * 25 24 22 27 27 C 1.38827 * 120.66492 * 0.02562 * 26 25 24 28 28 C 1.36626 * 120.52977 * 0.02562 * 27 26 25 29 29 C 1.39631 * 119.76142 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.46808 * 299.99841 * 1 2 3 31 31 H 1.08998 * 109.47627 * 59.99805 * 1 2 3 32 32 H 1.09003 * 109.46695 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46885 * 240.00701 * 2 1 3 34 34 H 1.08998 * 109.47627 * 120.00195 * 2 1 3 35 35 H 0.97001 * 120.00025 * 180.02562 * 8 7 5 36 36 H 0.97001 * 119.99945 * 95.00083 * 13 3 2 37 37 H 0.96697 * 114.00432 * 300.00593 * 18 16 14 38 38 H 1.09007 * 109.46620 * 304.99995 * 19 16 14 39 39 H 1.08999 * 109.47297 * 64.99377 * 19 16 14 40 40 H 1.08005 * 125.03425 * 359.96926 * 21 20 19 41 41 H 1.08001 * 120.11066 * 0.05176 * 25 24 22 42 42 H 1.08004 * 119.66647 * 180.02562 * 26 25 24 43 43 H 1.08005 * 119.73556 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.11711 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4444 -0.1214 6 1 4.1493 1.8091 0.6939 7 6 4.1411 0.9803 -1.2732 8 7 3.4096 0.7117 -2.3327 9 14 5.9919 0.7330 -1.3291 10 1 6.3289 -0.6065 -0.7837 11 1 6.4617 0.8278 -2.7346 12 1 6.6561 1.7811 -0.5133 13 7 1.6504 2.0981 1.2509 14 6 0.4329 2.6651 1.3637 15 8 -0.3404 2.6322 0.4299 16 6 0.0323 3.3400 2.6503 17 1 0.1475 2.6408 3.4785 18 8 -1.3319 3.7567 2.5649 19 6 0.9245 4.5605 2.8853 20 6 0.6071 5.1636 4.2292 21 6 -0.2327 6.1831 4.4687 22 7 -0.2690 6.4524 5.8098 23 1 -0.8064 7.1452 6.2247 24 6 0.5754 5.5973 6.4819 25 6 0.9144 5.4434 7.8224 26 6 1.8159 4.4699 8.1927 27 6 2.3916 3.6392 7.2410 28 6 2.0738 3.7735 5.9190 29 6 1.1623 4.7537 5.5214 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8310 0.3848 -3.1429 36 1 2.2687 2.1242 1.9978 37 1 -1.5083 4.3813 1.8481 38 1 1.9708 4.2555 2.8618 39 1 0.7437 5.2986 2.1039 40 1 -0.7979 6.7110 3.7148 41 1 0.4719 6.0848 8.5702 42 1 2.0774 4.3518 9.2339 43 1 3.0970 2.8811 7.5480 44 1 2.5253 3.1233 5.1843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184306046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:40 Heat of formation + Delta-G solvation = -65.149422 kcal Electronic energy + Delta-G solvation = -26248.237121 eV Core-core repulsion = 22550.377878 eV Total energy + Delta-G solvation = -3697.859243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13660 -40.90724 -38.04315 -37.60482 -36.59200 -34.47917 -33.89033 -32.87863 -31.28116 -30.13583 -29.47293 -28.44730 -25.57865 -24.61718 -23.66376 -22.60552 -22.11919 -21.10833 -20.46165 -19.31371 -18.63803 -17.72810 -17.54169 -17.12099 -16.75585 -16.58706 -16.23551 -15.98965 -15.48521 -15.24397 -14.86522 -14.73108 -14.61558 -14.53775 -14.02870 -13.70370 -13.48062 -13.35395 -13.23579 -12.91231 -12.89336 -12.75520 -12.59029 -12.48780 -12.19512 -12.17031 -12.07644 -11.72136 -11.63705 -11.60778 -11.07629 -10.58420 -10.51369 -10.18756 -9.61987 -9.06690 -8.47539 -8.17168 -6.29807 0.29073 0.77650 1.46133 1.47290 1.56349 1.68064 1.92716 2.33166 2.38211 2.65035 3.06020 3.14680 3.42588 3.84364 3.94911 3.96251 4.13568 4.20221 4.27276 4.38899 4.46836 4.53108 4.53764 4.57230 4.72972 4.74504 4.87993 4.95926 5.03337 5.07021 5.11533 5.24369 5.31684 5.42523 5.53884 5.64082 5.64912 5.75891 5.78222 5.86173 5.91088 5.93527 6.09538 6.32316 6.66283 6.79226 6.79363 7.02149 7.36087 7.58475 8.91340 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.003434 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.418670 B = 8150.899594 C = 9224.619315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 C 0.277 3.723 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.699 5.699 14 C 0.471 3.529 15 O -0.582 6.582 16 C 0.117 3.883 17 H 0.121 0.879 18 O -0.545 6.545 19 C -0.059 4.059 20 C -0.186 4.186 21 C 0.072 3.928 22 N -0.587 5.587 23 H 0.429 0.571 24 C 0.076 3.924 25 C -0.137 4.137 26 C -0.108 4.108 27 C -0.154 4.154 28 C -0.093 4.093 29 C -0.126 4.126 30 H 0.044 0.956 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.403 0.597 37 H 0.387 0.613 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.196 0.804 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.137 0.863 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 11.331 20.739 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.789 3.211 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.349 5.349 14 C 0.257 3.743 15 O -0.463 6.463 16 C 0.054 3.946 17 H 0.138 0.862 18 O -0.351 6.351 19 C -0.098 4.098 20 C -0.193 4.193 21 C -0.055 4.055 22 N -0.190 5.190 23 H 0.269 0.731 24 C -0.032 4.032 25 C -0.157 4.157 26 C -0.127 4.127 27 C -0.173 4.173 28 C -0.112 4.112 29 C -0.130 4.130 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.238 0.762 37 H 0.236 0.764 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.213 0.787 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.115 10.970 20.430 23.746 hybrid contribution 0.950 0.252 -0.747 1.234 sum -4.166 11.223 19.682 23.037 Atomic orbital electron populations 1.21678 0.96821 0.99270 1.00377 1.21725 0.93935 0.99324 1.00328 1.18361 0.93678 0.88907 0.81735 0.97773 1.21544 0.91366 1.43574 1.02069 0.90871 1.25742 1.02958 0.94866 0.94633 1.70136 1.37710 1.44854 1.02775 0.85479 0.79534 0.79022 0.77050 1.19720 1.21530 1.18718 1.46286 1.15486 1.55664 1.17474 1.22104 0.81953 0.79210 0.91021 1.90666 1.52308 1.61270 1.42077 1.21733 0.83440 0.96269 0.93160 0.86188 1.86522 1.24791 1.67190 1.56554 1.20395 0.99658 0.95833 0.93882 1.19972 1.04845 1.01801 0.92722 1.22013 0.99919 0.98545 0.85065 1.41714 1.39283 1.31979 1.06066 0.73147 1.18525 0.96032 0.94492 0.94107 1.20344 1.01617 1.01751 0.91991 1.21149 0.96300 0.94754 1.00480 1.20932 1.02271 1.01448 0.92660 1.20542 0.96683 0.97006 0.96935 1.19398 1.01141 0.99295 0.93199 0.93695 0.95505 0.93486 0.93057 0.93337 0.92704 0.76237 0.76381 0.89784 0.89769 0.78747 0.84153 0.83446 0.84545 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.11 -5.53 5.50 30.60 0.17 -5.36 16 3 C 0.28 13.91 2.11 44.25 0.09 14.00 16 4 H 0.00 0.26 7.52 -2.39 -0.02 0.24 16 5 C -0.55 -28.44 8.66 25.60 0.22 -28.22 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.99 5.16 84.65 0.44 1.42 16 8 N -0.92 -52.81 12.16 21.45 0.26 -52.55 16 9 Si 0.96 41.75 29.55 68.60 2.03 43.78 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.70 -27.80 4.92 -446.07 -2.19 -29.99 16 14 C 0.47 17.89 5.73 87.66 0.50 18.39 16 15 O -0.58 -26.91 13.46 15.95 0.21 -26.70 16 16 C 0.12 3.33 3.37 29.85 0.10 3.43 16 17 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 18 O -0.55 -15.54 12.75 -129.99 -1.66 -17.19 16 19 C -0.06 -1.42 5.40 29.85 0.16 -1.26 16 20 C -0.19 -4.24 5.34 -18.63 -0.10 -4.34 16 21 C 0.07 1.27 11.73 83.00 0.97 2.25 16 22 N -0.59 -9.40 6.07 -187.61 -1.14 -10.54 16 23 H 0.43 3.92 8.96 -92.71 -0.83 3.09 16 24 C 0.08 1.57 7.28 39.03 0.28 1.86 16 25 C -0.14 -2.37 10.08 22.37 0.23 -2.14 16 26 C -0.11 -1.81 10.01 22.30 0.22 -1.59 16 27 C -0.15 -2.98 9.97 22.03 0.22 -2.76 16 28 C -0.09 -2.13 10.05 22.23 0.22 -1.91 16 29 C -0.13 -3.04 6.35 -20.20 -0.13 -3.17 16 30 H 0.04 1.98 5.65 -2.39 -0.01 1.96 16 31 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 2.77 6.80 -2.39 -0.02 2.75 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.40 13.56 8.23 -92.71 -0.76 12.80 16 37 H 0.39 9.28 8.79 -74.06 -0.65 8.63 16 38 H 0.08 2.05 7.77 -2.38 -0.02 2.03 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -71.54 365.95 0.53 -71.01 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -1.20 Total: 36.58 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.22 Total: -14.38 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -3.07 Total: -93.09 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.44 Total: -43.89 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -71.54 0.53 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184306046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.856 kcal (2) G-P(sol) polarization free energy of solvation -71.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds