Wall clock time and date at job start Tue Mar 31 2020 11:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46622 * 2 1 4 4 H 1.08995 * 109.47348 * 54.19221 * 3 2 1 5 5 S 1.81397 * 109.47165 * 294.18440 * 3 2 1 6 6 C 1.81396 * 103.00243 * 304.55094 * 5 3 2 7 7 C 1.50707 * 109.46462 * 174.18729 * 3 2 1 8 8 O 1.21274 * 120.00307 * 30.26354 * 7 3 2 9 9 N 1.34777 * 119.99556 * 210.26268 * 7 3 2 10 10 C 1.47511 * 118.75710 * 174.94356 * 9 7 3 11 11 C 1.53568 * 111.02797 * 138.36895 * 10 9 7 12 12 C 1.51534 * 109.58645 * 320.02816 * 11 10 9 13 13 O 1.42154 * 108.76768 * 91.39309 * 12 11 10 14 14 C 1.38012 * 119.43989 * 272.78316 * 13 12 11 15 15 H 1.09003 * 109.46942 * 303.42291 * 14 13 12 16 16 C 1.52995 * 109.46925 * 183.42436 * 14 13 12 17 17 N 1.46499 * 109.46989 * 64.99694 * 16 14 13 18 18 C 1.36941 * 119.99899 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99985 * 359.72874 * 18 17 16 20 20 C 1.38809 * 120.00085 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99651 * 359.72213 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 179.72751 * 20 18 17 23 23 H 1.48498 * 109.47289 * 89.99901 * 22 20 18 24 24 H 1.48501 * 109.47016 * 209.99933 * 22 20 18 25 25 H 1.48497 * 109.46907 * 329.99951 * 22 20 18 26 26 C 1.45122 * 118.76319 * 354.94412 * 9 7 3 27 27 H 1.09005 * 109.47134 * 185.17114 * 1 2 3 28 28 H 1.09002 * 109.47313 * 305.16805 * 1 2 3 29 29 H 1.08999 * 109.47388 * 65.16841 * 1 2 3 30 30 H 1.08997 * 109.46468 * 240.00268 * 2 1 3 31 31 H 1.08993 * 109.46838 * 119.99841 * 2 1 3 32 32 H 1.08997 * 109.47215 * 65.12283 * 6 5 3 33 33 H 1.09002 * 109.47539 * 185.12671 * 6 5 3 34 34 H 1.09006 * 109.47204 * 305.12015 * 6 5 3 35 35 H 1.09005 * 109.16626 * 17.97581 * 10 9 7 36 36 H 1.08993 * 109.12716 * 258.74964 * 10 9 7 37 37 H 1.09000 * 109.45776 * 199.98817 * 11 10 9 38 38 H 1.09005 * 109.45084 * 80.05719 * 11 10 9 39 39 H 1.09004 * 109.58484 * 331.60796 * 12 11 10 40 40 H 1.09004 * 109.59278 * 211.18539 * 12 11 10 41 41 H 1.08994 * 109.47378 * 304.99733 * 16 14 13 42 42 H 1.09003 * 109.46766 * 184.99491 * 16 14 13 43 43 H 0.96999 * 119.99881 * 0.02562 * 17 16 14 44 44 H 0.97001 * 120.00063 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.46509 * 149.26958 * 26 9 7 46 46 H 1.09000 * 109.45825 * 29.30517 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5942 1.9855 0.8334 5 16 1.5808 2.2461 -1.5601 6 6 2.2856 1.1390 -2.8123 7 6 3.5401 1.4449 0.1439 8 8 4.1928 0.5214 -0.2941 9 7 4.1563 2.4735 0.7595 10 6 5.6119 2.3959 0.9859 11 6 6.2875 3.7437 0.6943 12 6 5.6620 4.3700 -0.5357 13 8 4.5879 5.2066 -0.1269 14 6 3.3294 4.6640 0.0360 15 1 3.0182 4.1833 -0.8915 16 6 2.3381 5.7732 0.3932 17 7 2.2171 6.7015 -0.7337 18 6 1.3798 7.7814 -0.6444 19 1 0.8053 7.9463 0.2551 20 6 1.2647 8.6606 -1.7123 21 7 1.9646 8.4594 -2.8087 22 14 0.1167 10.1294 -1.5933 23 1 0.8557 11.2915 -1.0379 24 1 -0.3949 10.4686 -2.9455 25 1 -1.0232 9.7958 -0.7020 26 6 3.3629 3.6155 1.1745 27 1 -0.3634 -1.0235 0.0926 28 1 -0.3634 0.5919 0.8401 29 1 -0.3634 0.4316 -0.9326 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7830 0.1729 -2.7673 33 1 2.1474 1.5747 -3.8018 34 1 3.3501 1.0040 -2.6203 35 1 6.0357 1.6341 0.3314 36 1 5.7976 2.1194 2.0237 37 1 7.3519 3.5862 0.5200 38 1 6.1543 4.4087 1.5477 39 1 5.2852 3.5864 -1.1931 40 1 6.4082 4.9645 -1.0628 41 1 2.6961 6.3117 1.2706 42 1 1.3639 5.3343 0.6086 43 1 2.7296 6.5507 -1.5434 44 1 1.8839 9.0736 -3.5552 45 1 3.8056 4.0608 2.0654 46 1 2.3469 3.2898 1.3980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200283285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:50 Heat of formation + Delta-G solvation = -60.742827 kcal Electronic energy + Delta-G solvation = -26304.471148 eV Core-core repulsion = 22742.246940 eV Total energy + Delta-G solvation = -3562.224208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69710 -38.64058 -35.49059 -34.95683 -34.57661 -33.01790 -30.97129 -28.92075 -28.77085 -28.35070 -26.42253 -24.98696 -22.89735 -22.25239 -21.27208 -20.91824 -19.23602 -17.64936 -17.17282 -16.93941 -16.71209 -16.25210 -15.57924 -14.97477 -14.90681 -14.64676 -14.33189 -14.07735 -13.86659 -13.34283 -13.27304 -13.13331 -13.06792 -12.97239 -12.62007 -12.31355 -12.11961 -12.02623 -11.95888 -11.81375 -11.65097 -11.26411 -10.99273 -10.89854 -10.76429 -10.69719 -10.42566 -10.21884 -9.98967 -9.66942 -9.64479 -9.34201 -8.79936 -8.60627 -7.57472 -6.80698 -5.66087 -2.93875 1.34575 2.22050 2.73837 2.86307 3.49616 3.54228 3.56079 3.99522 4.16469 4.42016 4.64951 4.68322 4.76858 4.86475 4.99724 5.09442 5.14138 5.15916 5.19257 5.25028 5.26747 5.45495 5.47464 5.52167 5.64144 5.66999 5.67750 5.71248 5.77804 5.86222 5.89993 6.03442 6.07037 6.13688 6.15646 6.36702 6.39297 6.64225 6.82838 7.15359 7.77231 7.93251 8.06255 8.52085 9.63838 10.22727 10.58571 11.56750 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.004538 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.301981 B = 6168.003447 C = 7364.783428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.100 4.100 4 H 0.132 0.868 5 S -0.177 6.177 6 C -0.137 4.137 7 C 0.520 3.480 8 O -0.542 6.542 9 N -0.599 5.599 10 C 0.111 3.889 11 C -0.165 4.165 12 C 0.074 3.926 13 O -0.367 6.367 14 C 0.074 3.926 15 H 0.078 0.922 16 C 0.168 3.832 17 N -0.722 5.722 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.067 3.933 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.024 0.976 42 H 0.031 0.969 43 H 0.387 0.613 44 H 0.253 0.747 45 H 0.087 0.913 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -18.305 7.246 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.231 4.231 4 H 0.149 0.851 5 S 0.050 5.950 6 C -0.305 4.305 7 C 0.306 3.694 8 O -0.420 6.420 9 N -0.331 5.331 10 C -0.011 4.011 11 C -0.204 4.204 12 C -0.003 4.003 13 O -0.285 6.285 14 C 0.013 3.987 15 H 0.096 0.904 16 C 0.040 3.960 17 N -0.367 5.367 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.057 4.057 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.222 0.778 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.606 -17.543 6.948 19.210 hybrid contribution 0.253 -0.498 0.042 0.560 sum 3.859 -18.041 6.989 19.729 Atomic orbital electron populations 1.21871 0.94072 1.01827 1.03420 1.21540 0.96912 0.92366 1.03572 1.23650 0.95431 1.02425 1.01604 0.85078 1.87557 1.73696 1.35383 0.98320 1.23574 1.04379 1.01794 1.00755 1.20491 0.89593 0.82056 0.77282 1.90661 1.66686 1.36049 1.48615 1.47839 1.08426 1.18416 1.58468 1.21840 0.79020 0.98745 1.01494 1.22502 1.00385 0.96433 1.01046 1.22104 0.89321 0.94263 0.94599 1.86423 1.16473 1.38166 1.87426 1.22646 0.84377 0.94327 0.97334 0.90402 1.20565 0.93280 0.89577 0.92612 1.42183 1.52480 1.27417 1.14570 1.19205 1.16846 1.01149 0.99512 0.91291 1.24707 1.00448 0.99363 0.96400 1.69678 1.44458 1.38746 1.05114 0.86220 0.80426 0.83129 0.76600 1.21835 1.21885 1.20825 1.22738 0.96064 0.87019 0.99843 0.92395 0.92358 0.91023 0.90742 0.91032 0.90300 0.87809 0.89908 0.89181 0.91733 0.89819 0.90108 0.93379 0.89354 0.95808 0.95163 0.77850 0.93662 0.89452 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.66 37.16 0.36 -1.00 16 2 C -0.10 -1.07 4.79 -26.73 -0.13 -1.19 16 3 C -0.10 -1.18 2.06 -27.88 -0.06 -1.24 16 4 H 0.13 1.41 5.83 -51.93 -0.30 1.10 16 5 S -0.18 -2.42 18.74 -107.50 -2.01 -4.44 16 6 C -0.14 -1.60 9.84 101.05 0.99 -0.61 16 7 C 0.52 6.94 6.30 -10.98 -0.07 6.87 16 8 O -0.54 -8.35 14.82 5.56 0.08 -8.27 16 9 N -0.60 -7.51 2.19 -172.47 -0.38 -7.89 16 10 C 0.11 1.23 6.18 -3.19 -0.02 1.21 16 11 C -0.17 -1.80 5.78 -27.18 -0.16 -1.96 16 12 C 0.07 1.04 6.37 36.42 0.23 1.27 16 13 O -0.37 -6.52 9.38 -26.52 -0.25 -6.77 16 14 C 0.07 1.24 2.67 -25.78 -0.07 1.17 16 15 H 0.08 1.41 5.82 -51.93 -0.30 1.11 16 16 C 0.17 3.40 5.92 -4.05 -0.02 3.37 16 17 N -0.72 -18.73 5.54 -59.91 -0.33 -19.06 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 22 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.07 0.87 4.76 -3.83 -0.02 0.85 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.68 7.36 -51.93 -0.38 0.30 16 30 H 0.07 0.81 6.24 -51.93 -0.32 0.49 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.79 7.05 -51.93 -0.37 0.43 16 33 H 0.10 1.14 8.14 -51.92 -0.42 0.71 16 34 H 0.08 1.06 7.16 -51.92 -0.37 0.69 16 35 H 0.09 1.07 6.95 -51.93 -0.36 0.71 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 39 H 0.05 0.71 7.40 -51.93 -0.38 0.33 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.39 10.83 7.65 -40.82 -0.31 10.51 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.09 1.05 8.11 -51.93 -0.42 0.62 16 46 H 0.09 0.98 5.51 -51.93 -0.29 0.70 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -32.91 366.95 -8.44 -41.36 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.58 Total: 8.45 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 0.80 Total: 1.42 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.01 Total: -54.95 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.17 Total: -15.04 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.01 Total: -4.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.91 -8.44 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200283285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds