Wall clock time and date at job start Tue Mar 31 2020 11:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46622 * 2 1 4 4 H 1.08995 * 109.47348 * 54.19221 * 3 2 1 5 5 S 1.81397 * 109.47165 * 294.18440 * 3 2 1 6 6 C 1.81396 * 103.00243 * 304.55094 * 5 3 2 7 7 C 1.50707 * 109.46462 * 174.18729 * 3 2 1 8 8 O 1.21274 * 120.00307 * 30.26354 * 7 3 2 9 9 N 1.34777 * 119.99556 * 210.26268 * 7 3 2 10 10 C 1.47511 * 118.75710 * 174.94356 * 9 7 3 11 11 C 1.53568 * 111.02797 * 138.36895 * 10 9 7 12 12 C 1.51534 * 109.58645 * 320.02816 * 11 10 9 13 13 O 1.42154 * 108.76768 * 91.39309 * 12 11 10 14 14 C 1.38012 * 119.43989 * 272.78316 * 13 12 11 15 15 H 1.09003 * 109.46942 * 303.42291 * 14 13 12 16 16 C 1.52995 * 109.46925 * 183.42436 * 14 13 12 17 17 N 1.46499 * 109.46989 * 64.99694 * 16 14 13 18 18 C 1.36941 * 119.99899 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99985 * 359.72874 * 18 17 16 20 20 C 1.38809 * 120.00085 * 180.02562 * 18 17 16 21 21 N 1.31621 * 119.99651 * 359.72213 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 179.72751 * 20 18 17 23 23 H 1.48498 * 109.47289 * 89.99901 * 22 20 18 24 24 H 1.48501 * 109.47016 * 209.99933 * 22 20 18 25 25 H 1.48497 * 109.46907 * 329.99951 * 22 20 18 26 26 C 1.45122 * 118.76319 * 354.94412 * 9 7 3 27 27 H 1.09005 * 109.47134 * 185.17114 * 1 2 3 28 28 H 1.09002 * 109.47313 * 305.16805 * 1 2 3 29 29 H 1.08999 * 109.47388 * 65.16841 * 1 2 3 30 30 H 1.08997 * 109.46468 * 240.00268 * 2 1 3 31 31 H 1.08993 * 109.46838 * 119.99841 * 2 1 3 32 32 H 1.08997 * 109.47215 * 65.12283 * 6 5 3 33 33 H 1.09002 * 109.47539 * 185.12671 * 6 5 3 34 34 H 1.09006 * 109.47204 * 305.12015 * 6 5 3 35 35 H 1.09005 * 109.16626 * 17.97581 * 10 9 7 36 36 H 1.08993 * 109.12716 * 258.74964 * 10 9 7 37 37 H 1.09000 * 109.45776 * 199.98817 * 11 10 9 38 38 H 1.09005 * 109.45084 * 80.05719 * 11 10 9 39 39 H 1.09004 * 109.58484 * 331.60796 * 12 11 10 40 40 H 1.09004 * 109.59278 * 211.18539 * 12 11 10 41 41 H 1.08994 * 109.47378 * 304.99733 * 16 14 13 42 42 H 1.09003 * 109.46766 * 184.99491 * 16 14 13 43 43 H 0.96999 * 119.99881 * 0.02562 * 17 16 14 44 44 H 0.97001 * 120.00063 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.46509 * 149.26958 * 26 9 7 46 46 H 1.09000 * 109.45825 * 29.30517 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5942 1.9855 0.8334 5 16 1.5808 2.2461 -1.5601 6 6 2.2856 1.1390 -2.8123 7 6 3.5401 1.4449 0.1439 8 8 4.1928 0.5214 -0.2941 9 7 4.1563 2.4735 0.7595 10 6 5.6119 2.3959 0.9859 11 6 6.2875 3.7437 0.6943 12 6 5.6620 4.3700 -0.5357 13 8 4.5879 5.2066 -0.1269 14 6 3.3294 4.6640 0.0360 15 1 3.0182 4.1833 -0.8915 16 6 2.3381 5.7732 0.3932 17 7 2.2171 6.7015 -0.7337 18 6 1.3798 7.7814 -0.6444 19 1 0.8053 7.9463 0.2551 20 6 1.2647 8.6606 -1.7123 21 7 1.9646 8.4594 -2.8087 22 14 0.1167 10.1294 -1.5933 23 1 0.8557 11.2915 -1.0379 24 1 -0.3949 10.4686 -2.9455 25 1 -1.0232 9.7958 -0.7020 26 6 3.3629 3.6155 1.1745 27 1 -0.3634 -1.0235 0.0926 28 1 -0.3634 0.5919 0.8401 29 1 -0.3634 0.4316 -0.9326 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7830 0.1729 -2.7673 33 1 2.1474 1.5747 -3.8018 34 1 3.3501 1.0040 -2.6203 35 1 6.0357 1.6341 0.3314 36 1 5.7976 2.1194 2.0237 37 1 7.3519 3.5862 0.5200 38 1 6.1543 4.4087 1.5477 39 1 5.2852 3.5864 -1.1931 40 1 6.4082 4.9645 -1.0628 41 1 2.6961 6.3117 1.2706 42 1 1.3639 5.3343 0.6086 43 1 2.7296 6.5507 -1.5434 44 1 1.8839 9.0736 -3.5552 45 1 3.8056 4.0608 2.0654 46 1 2.3469 3.2898 1.3980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200283285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:49 Heat of formation + Delta-G solvation = -81.560221 kcal Electronic energy + Delta-G solvation = -26305.373858 eV Core-core repulsion = 22742.246940 eV Total energy + Delta-G solvation = -3563.126918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77517 -39.84498 -36.75591 -36.29281 -35.73776 -34.40754 -32.75711 -30.25272 -29.82059 -29.29491 -27.63099 -26.48324 -24.52748 -23.32239 -22.46281 -22.09653 -20.27292 -19.19408 -18.61570 -18.10364 -17.87713 -17.35988 -16.77390 -16.58715 -15.99897 -15.84213 -15.66658 -15.12212 -15.06768 -14.81308 -14.74073 -14.30303 -14.15181 -13.98138 -13.86416 -13.67133 -13.27976 -13.20727 -12.92064 -12.79914 -12.73772 -12.68612 -12.47206 -12.31947 -12.08729 -11.89573 -11.82667 -11.74167 -11.54636 -11.29382 -10.90740 -10.70251 -10.51855 -9.70600 -8.91576 -8.65724 -7.87115 -5.15108 0.34722 1.21540 1.50477 1.52802 1.60878 1.76844 1.85379 2.61416 2.77160 3.17300 3.47022 3.55297 3.68183 3.75932 3.86703 4.05030 4.07214 4.18679 4.21199 4.24365 4.30826 4.35571 4.43415 4.44748 4.49692 4.61781 4.69721 4.71603 4.75489 4.83021 4.84962 4.93537 5.06444 5.08967 5.13342 5.15943 5.27610 5.41439 5.44023 5.54942 6.12527 6.33568 6.80240 6.91156 7.40382 8.17309 8.40730 9.36856 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.004538 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.301981 B = 6168.003447 C = 7364.783428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.088 4.088 4 H 0.144 0.856 5 S -0.226 6.226 6 C -0.123 4.123 7 C 0.518 3.482 8 O -0.564 6.564 9 N -0.598 5.598 10 C 0.109 3.891 11 C -0.153 4.153 12 C 0.071 3.929 13 O -0.396 6.396 14 C 0.082 3.918 15 H 0.062 0.938 16 C 0.165 3.835 17 N -0.737 5.737 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.298 1.298 25 H -0.267 1.267 26 C 0.079 3.921 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.091 0.909 41 H 0.025 0.975 42 H 0.044 0.956 43 H 0.373 0.627 44 H 0.249 0.751 45 H 0.103 0.897 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -19.159 9.215 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.219 4.219 4 H 0.161 0.839 5 S 0.001 5.999 6 C -0.292 4.292 7 C 0.304 3.696 8 O -0.444 6.444 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.191 4.191 12 C -0.005 4.005 13 O -0.315 6.315 14 C 0.021 3.979 15 H 0.080 0.920 16 C 0.038 3.962 17 N -0.379 5.379 18 C -0.371 4.371 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.801 3.199 23 H -0.216 1.216 24 H -0.225 1.225 25 H -0.191 1.191 26 C -0.045 4.045 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.204 0.796 44 H 0.057 0.943 45 H 0.122 0.878 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.333 -18.420 8.971 20.757 hybrid contribution 0.403 -0.282 -0.561 0.746 sum 3.735 -18.702 8.409 20.843 Atomic orbital electron populations 1.21835 0.92936 1.02810 1.03136 1.21527 0.97786 0.91136 1.03464 1.23677 0.94471 1.03370 1.00379 0.83895 1.87697 1.74095 1.37331 1.00734 1.23524 1.03417 1.02092 1.00150 1.20746 0.90163 0.81867 0.76818 1.90651 1.67301 1.36984 1.49477 1.47893 1.09104 1.17860 1.58045 1.21975 0.78068 0.98522 1.02678 1.22406 1.01568 0.95920 0.99215 1.22254 0.88466 0.93724 0.96095 1.86346 1.17257 1.40061 1.87884 1.22408 0.83480 0.93719 0.98248 0.92001 1.20735 0.95014 0.89688 0.90721 1.42389 1.51905 1.27992 1.15570 1.19659 1.16428 1.01467 0.99521 0.90351 1.25543 1.02570 1.02492 0.96294 1.69851 1.46556 1.39920 1.05888 0.85153 0.78791 0.79560 0.76355 1.21596 1.22467 1.19139 1.22567 0.97416 0.86113 0.98445 0.90937 0.91773 0.92002 0.91604 0.90284 0.88595 0.87411 0.91199 0.89979 0.89407 0.87203 0.89917 0.94714 0.89062 0.95661 0.93833 0.79572 0.94264 0.87829 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.66 71.98 0.70 -1.67 16 2 C -0.10 -1.88 4.79 30.60 0.15 -1.73 16 3 C -0.09 -1.96 2.06 29.85 0.06 -1.90 16 4 H 0.14 2.77 5.83 -2.39 -0.01 2.76 16 5 S -0.23 -6.15 18.74 -56.49 -1.06 -7.21 16 6 C -0.12 -2.89 9.84 113.37 1.12 -1.77 16 7 C 0.52 13.15 6.30 87.66 0.55 13.70 16 8 O -0.56 -16.87 14.82 -3.01 -0.04 -16.91 16 9 N -0.60 -13.91 2.19 -817.95 -1.79 -15.70 16 10 C 0.11 2.18 6.18 86.38 0.53 2.71 16 11 C -0.15 -3.02 5.78 30.30 0.18 -2.84 16 12 C 0.07 1.96 6.37 71.50 0.46 2.42 16 13 O -0.40 -14.02 9.38 -117.82 -1.11 -15.12 16 14 C 0.08 2.71 2.67 31.21 0.08 2.80 16 15 H 0.06 2.27 5.82 -2.39 -0.01 2.26 16 16 C 0.17 6.59 5.92 86.38 0.51 7.10 16 17 N -0.74 -38.59 5.54 -343.47 -1.90 -40.49 16 18 C -0.24 -13.55 9.99 84.03 0.84 -12.71 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 22 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.08 1.87 4.76 87.26 0.42 2.28 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.11 7.36 -2.39 -0.02 1.09 16 30 H 0.07 1.36 6.24 -2.39 -0.01 1.34 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.87 7.05 -2.39 -0.02 1.86 16 33 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.07 1.81 7.16 -2.39 -0.02 1.80 16 35 H 0.08 1.82 6.95 -2.38 -0.02 1.80 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.65 8.01 -2.38 -0.02 1.64 16 39 H 0.03 1.04 7.40 -2.38 -0.02 1.02 16 40 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.37 21.45 7.65 -92.71 -0.71 20.74 16 44 H 0.25 15.19 8.31 -92.71 -0.77 14.41 16 45 H 0.10 2.17 8.11 -2.39 -0.02 2.16 16 46 H 0.10 2.09 5.51 -2.39 -0.01 2.08 16 Total: -1.00 -71.29 366.95 2.72 -68.57 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: 0.26 Total: 34.59 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 6.05 Total: 4.33 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -3.41 Total: -117.11 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.15 Total: -32.04 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.06 Total: -7.21 kcal Total: -71.29 2.72 -68.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200283285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.992 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds