Wall clock time and date at job start Tue Mar 31 2020 11:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47160 * 2 1 4 4 H 1.09003 * 109.47506 * 305.00201 * 3 2 1 5 5 S 1.81400 * 109.47386 * 64.99933 * 3 2 1 6 6 C 1.81400 * 103.00319 * 185.00065 * 5 3 2 7 7 C 1.50701 * 109.47438 * 185.00230 * 3 2 1 8 8 O 1.21280 * 119.99493 * 324.30843 * 7 3 2 9 9 N 1.34773 * 120.00530 * 144.30570 * 7 3 2 10 10 C 1.47510 * 118.75588 * 5.23886 * 9 7 3 11 11 C 1.53571 * 111.02901 * 221.60017 * 10 9 7 12 12 C 1.51535 * 109.58092 * 39.97852 * 11 10 9 13 13 O 1.42149 * 108.75796 * 268.59850 * 12 11 10 14 14 C 1.38020 * 119.43939 * 87.22917 * 13 12 11 15 15 H 1.08994 * 109.47108 * 56.56833 * 14 13 12 16 16 C 1.52993 * 109.47227 * 176.56921 * 14 13 12 17 17 N 1.46502 * 109.47059 * 299.99776 * 16 14 13 18 18 C 1.36937 * 120.00022 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00024 * 0.02562 * 18 17 16 20 20 C 1.38819 * 120.00021 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99689 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99895 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47476 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47025 * 119.99996 * 22 20 18 25 25 H 1.48504 * 109.47059 * 239.99699 * 22 20 18 26 26 C 1.45119 * 118.76125 * 184.96588 * 9 7 3 27 27 H 1.08991 * 109.46744 * 59.99807 * 1 2 3 28 28 H 1.08994 * 109.46854 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46724 * 299.99943 * 1 2 3 30 30 H 1.08997 * 109.46724 * 240.00057 * 2 1 3 31 31 H 1.09000 * 109.47313 * 120.00233 * 2 1 3 32 32 H 1.09000 * 109.47373 * 180.02562 * 6 5 3 33 33 H 1.09007 * 109.47253 * 300.00232 * 6 5 3 34 34 H 1.08993 * 109.46901 * 59.99882 * 6 5 3 35 35 H 1.09004 * 109.17009 * 342.00335 * 10 9 7 36 36 H 1.09006 * 109.16952 * 101.20087 * 10 9 7 37 37 H 1.09006 * 109.45069 * 160.00607 * 11 10 9 38 38 H 1.08991 * 109.45572 * 279.94170 * 11 10 9 39 39 H 1.09008 * 109.58818 * 28.38197 * 12 11 10 40 40 H 1.09002 * 109.59171 * 148.81587 * 12 11 10 41 41 H 1.09000 * 109.47534 * 59.99757 * 16 14 13 42 42 H 1.08997 * 109.47659 * 179.97438 * 16 14 13 43 43 H 0.96999 * 119.99958 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99825 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.46227 * 210.76537 * 26 9 7 46 46 H 1.09000 * 109.45864 * 330.71790 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 16 1.5602 2.2535 1.5500 6 6 2.1078 3.9649 1.3016 7 6 3.5420 1.4443 -0.1239 8 8 4.1956 0.5745 0.4119 9 7 4.1588 2.4124 -0.8301 10 6 3.3498 3.5205 -1.3719 11 6 3.7888 3.8765 -2.7998 12 6 4.0942 2.6068 -3.5686 13 8 5.4745 2.3022 -3.4183 14 6 5.8898 1.5524 -2.3365 15 1 5.3553 0.6026 -2.3260 16 6 7.3933 1.2903 -2.4447 17 7 7.6735 0.5585 -3.6826 18 6 8.9604 0.2109 -3.9961 19 1 9.7687 0.4758 -3.3306 20 6 9.2259 -0.4821 -5.1692 21 7 8.2409 -0.8045 -5.9804 22 14 10.9813 -0.9569 -5.5965 23 1 11.8967 -0.4818 -4.5281 24 1 11.0804 -2.4342 -5.7117 25 1 11.3622 -0.3329 -6.8891 26 6 5.5945 2.3284 -1.0238 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8673 4.5554 2.1857 33 1 3.1851 3.9814 1.1362 34 1 1.6006 4.3864 0.4338 35 1 2.3005 3.2255 -1.3831 36 1 3.4677 4.3956 -0.7326 37 1 2.9879 4.4204 -3.3008 38 1 4.6815 4.5005 -2.7602 39 1 3.4939 1.7871 -3.1736 40 1 3.8654 2.7546 -4.6240 41 1 7.9279 2.2401 -2.4552 42 1 7.7214 0.6985 -1.5902 43 1 6.9476 0.3209 -4.2804 44 1 8.4264 -1.2890 -6.8000 45 1 6.0109 3.3333 -1.0933 46 1 6.0449 1.8067 -0.1793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200283287.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:53 Heat of formation + Delta-G solvation = -80.922421 kcal Electronic energy + Delta-G solvation = -25894.178618 eV Core-core repulsion = 22331.079358 eV Total energy + Delta-G solvation = -3563.099261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84671 -39.85320 -37.05060 -36.31925 -35.69831 -34.32646 -32.70576 -31.03777 -29.98160 -28.91680 -27.55303 -26.57003 -24.62794 -23.11938 -22.68908 -22.35335 -20.26437 -19.28354 -18.78648 -18.02250 -17.77602 -17.55680 -16.87770 -16.57688 -16.19362 -15.92506 -15.71361 -15.20082 -14.99099 -14.86936 -14.79637 -14.45942 -14.22513 -13.95354 -13.85778 -13.74931 -13.42444 -13.17042 -13.06589 -12.82003 -12.79555 -12.64579 -12.39194 -12.25882 -12.10041 -12.03695 -11.98199 -11.84422 -11.51782 -11.22756 -11.00625 -10.87190 -10.58489 -9.74854 -9.02819 -8.74305 -7.95521 -5.25357 0.28384 1.25178 1.46058 1.48114 1.58203 1.62038 1.93310 2.55091 2.68564 3.13925 3.37994 3.46808 3.56187 3.65191 3.80980 3.97718 4.01263 4.05988 4.20145 4.26028 4.31025 4.32127 4.36645 4.38026 4.43845 4.49664 4.60850 4.65586 4.73905 4.74475 4.84745 4.88522 5.04449 5.05105 5.08467 5.11222 5.15526 5.36155 5.40160 5.46390 6.09413 6.25152 6.71181 6.94013 7.31583 8.05330 8.30848 9.28515 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.003159 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.010688 B = 8861.247034 C = 9168.612770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.077 4.077 4 H 0.136 0.864 5 S -0.233 6.233 6 C -0.134 4.134 7 C 0.506 3.494 8 O -0.565 6.565 9 N -0.603 5.603 10 C 0.088 3.912 11 C -0.156 4.156 12 C 0.063 3.937 13 O -0.395 6.395 14 C 0.107 3.893 15 H 0.019 0.981 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.248 4.248 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.979 3.021 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.094 3.906 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.105 0.895 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 14.398 12.989 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.207 4.207 4 H 0.154 0.846 5 S -0.007 6.007 6 C -0.302 4.302 7 C 0.291 3.709 8 O -0.443 6.443 9 N -0.336 5.336 10 C -0.032 4.032 11 C -0.194 4.194 12 C -0.013 4.013 13 O -0.314 6.314 14 C 0.047 3.953 15 H 0.037 0.963 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.807 3.193 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.217 1.217 26 C -0.030 4.030 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.142 0.858 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.123 0.877 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.380 13.627 14.093 28.278 hybrid contribution 1.372 -0.402 -1.487 2.063 sum -19.008 13.225 12.606 26.365 Atomic orbital electron populations 1.21783 0.92095 1.02922 1.03351 1.21217 0.98349 0.91195 1.02731 1.23579 0.92915 1.03253 1.00984 0.84613 1.87172 1.78463 1.10374 1.24665 1.23876 1.04414 0.93486 1.08382 1.21106 0.90845 0.81078 0.77837 1.90714 1.67544 1.38298 1.47746 1.48022 1.07772 1.24959 1.52861 1.22713 0.95487 0.89333 0.95707 1.22446 1.04402 0.98054 0.94457 1.22424 0.80885 0.96607 1.01377 1.86373 1.26458 1.72048 1.46490 1.21951 0.94712 0.92030 0.86656 0.96303 1.20754 0.91808 0.94929 0.89012 1.42407 1.05934 1.67172 1.22697 1.19718 0.86250 1.28488 1.03508 0.90458 1.25641 1.01720 1.02015 0.97542 1.69856 1.32145 1.46320 1.13725 0.85000 0.79436 0.77106 0.77752 1.18895 1.21972 1.21726 1.22242 0.81016 1.02455 0.97334 0.90955 0.91589 0.91310 0.91407 0.92138 0.86303 0.90721 0.87345 0.87790 0.88189 0.85811 0.90352 0.93964 0.88562 0.94851 0.94935 0.79421 0.93990 0.87670 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.74 71.98 0.70 -1.35 16 2 C -0.10 -1.96 4.99 30.59 0.15 -1.81 16 3 C -0.08 -1.43 2.08 29.85 0.06 -1.37 16 4 H 0.14 1.72 5.60 -2.39 -0.01 1.71 16 5 S -0.23 -3.98 20.59 -56.49 -1.16 -5.14 16 6 C -0.13 -1.28 8.73 113.37 0.99 -0.29 16 7 C 0.51 13.26 6.26 87.66 0.55 13.80 16 8 O -0.56 -20.53 15.79 -3.03 -0.05 -20.58 16 9 N -0.60 -13.43 2.06 -816.90 -1.69 -15.12 16 10 C 0.09 1.11 4.13 86.38 0.36 1.46 16 11 C -0.16 -2.24 5.79 30.31 0.18 -2.06 16 12 C 0.06 1.52 6.37 71.50 0.46 1.97 16 13 O -0.39 -13.93 9.18 -117.93 -1.08 -15.02 16 14 C 0.11 3.90 2.74 31.39 0.09 3.98 16 15 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 16 C 0.16 7.13 5.95 86.38 0.51 7.64 16 17 N -0.74 -40.97 5.49 -343.45 -1.89 -42.86 16 18 C -0.25 -14.68 9.99 84.04 0.84 -13.84 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 21 N -0.97 -61.95 13.06 21.65 0.28 -61.67 16 22 Si 0.98 47.79 29.55 68.60 2.03 49.81 16 23 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 C 0.09 2.63 4.95 87.44 0.43 3.06 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.98 7.13 -2.39 -0.02 0.96 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.51 8.02 -2.39 -0.02 1.49 16 32 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.86 6.42 -2.39 -0.02 0.85 16 34 H 0.11 0.47 7.28 -2.39 -0.02 0.45 16 35 H 0.10 0.86 4.75 -2.38 -0.01 0.85 16 36 H 0.10 0.80 6.26 -2.38 -0.01 0.79 16 37 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 1.31 8.01 -2.39 -0.02 1.29 16 39 H 0.04 1.03 7.40 -2.38 -0.02 1.02 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.37 22.29 7.53 -92.71 -0.70 21.59 16 44 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.11 2.49 8.11 -2.39 -0.02 2.47 16 46 H 0.08 2.52 7.21 -2.39 -0.02 2.50 16 Total: -1.00 -78.65 367.40 2.50 -76.15 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.27 Total: 27.38 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.78 Total: 7.04 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -3.29 Total: -119.64 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.13 Total: -35.60 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.81 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -1.16 Total: -5.14 kcal Total: -78.65 2.50 -76.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200283287.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.771 kcal (2) G-P(sol) polarization free energy of solvation -78.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds