Wall clock time and date at job start Tue Mar 31 2020 11:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47112 * 2 1 4 4 H 1.08992 * 109.47155 * 304.99803 * 3 2 1 5 5 S 1.81406 * 109.47086 * 64.99839 * 3 2 1 6 6 C 1.81398 * 102.99886 * 183.41787 * 5 3 2 7 7 C 1.50702 * 109.46901 * 184.99591 * 3 2 1 8 8 O 1.21277 * 120.00372 * 325.16677 * 7 3 2 9 9 N 1.34776 * 119.99478 * 145.16912 * 7 3 2 10 10 C 1.47519 * 118.75607 * 176.10368 * 9 7 3 11 11 C 1.53573 * 111.02742 * 138.34898 * 10 9 7 12 12 C 1.51534 * 109.58543 * 320.02303 * 11 10 9 13 13 O 1.42148 * 108.75734 * 91.39802 * 12 11 10 14 14 C 1.38011 * 119.44424 * 272.77419 * 13 12 11 15 15 H 1.09002 * 109.46708 * 303.43072 * 14 13 12 16 16 C 1.52994 * 109.47443 * 183.43238 * 14 13 12 17 17 N 1.46500 * 109.47080 * 64.99715 * 16 14 13 18 18 C 1.36942 * 120.00295 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99279 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00110 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00489 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47191 * 59.99578 * 22 20 18 24 24 H 1.48493 * 109.47292 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47132 * 300.00211 * 22 20 18 26 26 C 1.45124 * 118.76272 * 355.83117 * 9 7 3 27 27 H 1.08991 * 109.46812 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47284 * 300.00307 * 1 2 3 29 29 H 1.09005 * 109.46787 * 59.99874 * 1 2 3 30 30 H 1.09002 * 109.47374 * 239.99821 * 2 1 3 31 31 H 1.09000 * 109.47176 * 119.99506 * 2 1 3 32 32 H 1.08999 * 109.47051 * 61.16225 * 6 5 3 33 33 H 1.09000 * 109.47083 * 301.16545 * 6 5 3 34 34 H 1.08995 * 109.47440 * 181.16462 * 6 5 3 35 35 H 1.08995 * 109.16374 * 258.74840 * 10 9 7 36 36 H 1.08998 * 109.16469 * 17.99728 * 10 9 7 37 37 H 1.09006 * 109.44806 * 80.06060 * 11 10 9 38 38 H 1.08999 * 109.44569 * 199.98753 * 11 10 9 39 39 H 1.08992 * 109.58723 * 211.18748 * 12 11 10 40 40 H 1.09001 * 109.58445 * 331.62051 * 12 11 10 41 41 H 1.08998 * 109.47562 * 184.99706 * 16 14 13 42 42 H 1.09000 * 109.47036 * 304.99740 * 16 14 13 43 43 H 0.96996 * 120.00180 * 0.02562 * 17 16 14 44 44 H 0.96990 * 120.00382 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.45502 * 29.32903 * 26 9 7 46 46 H 1.09002 * 109.45952 * 149.28406 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 16 1.5601 2.2536 1.5501 6 6 2.1509 3.9533 1.3212 7 6 3.5420 1.4443 -0.1237 8 8 4.1946 0.5659 0.3991 9 7 4.1599 2.4221 -0.8154 10 6 5.6346 2.4465 -0.8464 11 6 6.1507 2.7853 -2.2526 12 6 5.3013 2.0783 -3.2894 13 8 4.2377 2.9396 -3.6734 14 6 3.0643 2.9341 -2.9468 15 1 2.6571 1.9233 -2.9220 16 6 2.0529 3.8752 -3.6042 17 7 1.6924 3.3579 -4.9266 18 6 0.7951 4.0377 -5.7065 19 1 0.3536 4.9554 -5.3467 20 6 0.4532 3.5472 -6.9592 21 7 0.9909 2.4286 -7.3973 22 14 -0.7702 4.4749 -8.0233 23 1 -0.2507 5.8381 -8.3012 24 1 -0.9628 3.7484 -9.3040 25 1 -2.0691 4.5760 -7.3108 26 6 3.3495 3.4079 -1.5065 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6493 4.3998 0.4626 33 1 3.2271 3.9437 1.1486 34 1 1.9314 4.5377 2.2146 35 1 5.9949 3.1966 -0.1425 36 1 6.0148 1.4682 -0.5524 37 1 6.0942 3.8624 -2.4101 38 1 7.1862 2.4587 -2.3475 39 1 5.9114 1.8399 -4.1606 40 1 4.8936 1.1612 -2.8641 41 1 1.1594 3.9395 -2.9833 42 1 2.4941 4.8663 -3.7097 43 1 2.0886 2.5336 -5.2495 44 1 0.7522 2.0861 -8.2728 45 1 2.4052 3.5369 -0.9775 46 1 3.8815 4.3588 -1.5366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200283289.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:57 Heat of formation + Delta-G solvation = -82.041572 kcal Electronic energy + Delta-G solvation = -26273.458148 eV Core-core repulsion = 22710.310358 eV Total energy + Delta-G solvation = -3563.147791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.90678 -39.90791 -36.82571 -36.41784 -35.74864 -34.48336 -32.84140 -30.40199 -30.22040 -29.00530 -27.70234 -26.53944 -24.57815 -23.36719 -22.64217 -22.15158 -20.32625 -19.23257 -18.73037 -18.20900 -17.68419 -17.55031 -16.80509 -16.61274 -16.09438 -15.98748 -15.84415 -15.25937 -15.04551 -14.81540 -14.69064 -14.43462 -14.27974 -13.94291 -13.90787 -13.71939 -13.42888 -13.24927 -13.03194 -12.80130 -12.76206 -12.70889 -12.41830 -12.22359 -12.17564 -12.05065 -11.95496 -11.80128 -11.57508 -11.30467 -10.93898 -10.87968 -10.63508 -9.77644 -8.98060 -8.77310 -7.91440 -5.20696 0.25315 1.20300 1.49738 1.52995 1.57869 1.59303 1.89149 2.58426 2.65115 3.10732 3.43023 3.48017 3.58295 3.75175 3.79408 3.91402 4.00864 4.02317 4.17655 4.24790 4.26849 4.28377 4.31399 4.36785 4.41970 4.47633 4.59923 4.69932 4.71400 4.76992 4.84785 4.86742 5.01330 5.02620 5.07629 5.08590 5.16812 5.32904 5.36346 5.51414 6.04266 6.28947 6.67434 6.87000 7.35992 8.10795 8.33666 9.32129 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.004243 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.239575 B = 6597.147296 C = 7629.626652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.087 4.087 4 H 0.113 0.887 5 S -0.222 6.222 6 C -0.135 4.135 7 C 0.517 3.483 8 O -0.557 6.557 9 N -0.602 5.602 10 C 0.108 3.892 11 C -0.152 4.152 12 C 0.069 3.931 13 O -0.392 6.392 14 C 0.094 3.906 15 H 0.030 0.970 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.244 4.244 19 H 0.081 0.919 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.075 3.925 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.050 0.950 42 H 0.033 0.967 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.100 0.900 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.607 2.109 18.919 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.218 4.218 4 H 0.131 0.869 5 S 0.004 5.996 6 C -0.303 4.303 7 C 0.302 3.698 8 O -0.435 6.435 9 N -0.334 5.334 10 C -0.013 4.013 11 C -0.190 4.190 12 C -0.007 4.007 13 O -0.311 6.311 14 C 0.034 3.966 15 H 0.048 0.952 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.375 4.375 19 H 0.099 0.901 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.049 4.049 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.204 0.796 44 H 0.059 0.941 45 H 0.118 0.882 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.350 1.519 19.912 20.955 hybrid contribution 0.190 0.178 -1.930 1.948 sum 6.539 1.697 17.982 19.209 Atomic orbital electron populations 1.21803 0.92999 1.02975 1.02834 1.21176 0.97757 0.90924 1.03018 1.23559 0.94185 1.03384 1.00674 0.86910 1.86995 1.77761 1.10847 1.23989 1.23792 1.04362 0.94062 1.08084 1.20765 0.90145 0.80961 0.77911 1.90654 1.67255 1.37118 1.48505 1.47971 1.07567 1.28199 1.49687 1.21993 0.77493 1.03657 0.98137 1.22400 1.01164 1.02684 0.92747 1.22312 0.87826 0.91792 0.98806 1.86382 1.23909 1.63580 1.57256 1.22056 0.85521 0.98036 0.91005 0.95187 1.20812 0.93969 0.95289 0.86459 1.42420 1.51647 1.28438 1.15779 1.19626 1.16097 1.04628 0.97196 0.90117 1.25570 1.03015 0.98769 0.99404 1.69830 1.48846 1.23576 1.19933 0.85214 0.79135 0.77697 0.77723 1.20373 1.22489 1.20094 1.22617 0.97175 0.93079 0.92010 0.91069 0.91109 0.92530 0.91410 0.90839 0.88622 0.90270 0.85766 0.89342 0.90077 0.89665 0.87085 0.88708 0.94619 0.93245 0.94888 0.79589 0.94142 0.88217 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.74 71.98 0.70 -2.42 16 2 C -0.09 -2.18 4.98 30.60 0.15 -2.03 16 3 C -0.09 -2.07 2.01 29.85 0.06 -2.01 16 4 H 0.11 2.66 5.72 -2.39 -0.01 2.64 16 5 S -0.22 -4.68 20.60 -56.49 -1.16 -5.84 16 6 C -0.13 -1.98 9.05 113.37 1.03 -0.95 16 7 C 0.52 13.68 6.16 87.66 0.54 14.22 16 8 O -0.56 -18.11 15.66 -3.02 -0.05 -18.16 16 9 N -0.60 -13.49 1.87 -818.99 -1.53 -15.03 16 10 C 0.11 2.09 6.18 86.38 0.53 2.62 16 11 C -0.15 -2.78 5.78 30.31 0.18 -2.61 16 12 C 0.07 1.79 6.38 71.50 0.46 2.24 16 13 O -0.39 -13.01 9.38 -117.81 -1.11 -14.12 16 14 C 0.09 2.90 2.44 31.03 0.08 2.98 16 15 H 0.03 1.05 7.97 -2.39 -0.02 1.03 16 16 C 0.16 5.99 5.92 86.38 0.51 6.50 16 17 N -0.74 -37.21 5.54 -343.46 -1.90 -39.11 16 18 C -0.24 -13.37 9.99 84.03 0.84 -12.53 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 22 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.08 1.63 3.59 87.07 0.31 1.94 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.42 7.13 -2.39 -0.02 1.40 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.88 8.02 -2.39 -0.02 1.86 16 32 H 0.10 1.23 6.85 -2.39 -0.02 1.21 16 33 H 0.08 1.19 7.07 -2.39 -0.02 1.17 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.79 6.96 -2.39 -0.02 1.78 16 37 H 0.08 1.55 8.01 -2.38 -0.02 1.53 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.04 1.01 7.40 -2.39 -0.02 0.99 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.37 20.62 7.65 -92.71 -0.71 19.91 16 44 H 0.25 14.98 8.31 -92.72 -0.77 14.21 16 45 H 0.10 1.90 3.30 -2.39 -0.01 1.89 16 46 H 0.11 2.06 8.12 -2.39 -0.02 2.04 16 Total: -1.00 -70.17 368.30 2.67 -67.50 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.26 Total: 32.57 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.85 Total: 4.11 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -3.15 Total: -113.69 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.15 Total: -32.28 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -1.16 Total: -5.84 kcal Total: -70.17 2.67 -67.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200283289.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.544 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds