Wall clock time and date at job start Tue Mar 31 2020 10:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99890 * 2 1 4 4 H 1.09000 * 109.47468 * 0.02562 * 3 2 1 5 5 C 1.50700 * 109.47384 * 120.00202 * 3 2 1 6 6 O 1.21277 * 120.00307 * 119.99765 * 5 3 2 7 7 N 1.34780 * 119.99609 * 300.00347 * 5 3 2 8 8 C 1.46501 * 119.99530 * 179.97438 * 7 5 3 9 9 H 1.08994 * 110.64120 * 31.86140 * 8 7 5 10 10 C 1.54317 * 110.72210 * 268.51866 * 8 7 5 11 11 N 1.47026 * 107.27526 * 219.44661 * 10 8 7 12 12 C 1.36929 * 125.65037 * 178.89589 * 11 10 8 13 13 H 1.08003 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99938 * 180.02562 * 12 11 10 15 15 N 1.31618 * 120.00178 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00114 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46724 * 60.00030 * 16 14 12 18 18 H 1.48497 * 109.47009 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46867 * 300.00423 * 16 14 12 20 20 C 1.47423 * 108.69794 * 358.94393 * 11 10 8 21 21 C 1.54906 * 104.83781 * 24.12602 * 20 11 10 22 22 H 1.08997 * 111.04015 * 204.90369 * 21 20 11 23 23 O 1.42905 * 111.00157 * 81.06283 * 21 20 11 24 24 C 1.50699 * 109.47287 * 240.00266 * 3 2 1 25 25 C 1.38238 * 119.99984 * 299.72641 * 24 3 2 26 26 C 1.38240 * 120.00272 * 179.76624 * 25 24 3 27 27 C 1.38238 * 119.99491 * 0.48646 * 26 25 24 28 28 C 1.38231 * 120.00232 * 359.78842 * 27 26 25 29 29 C 1.38239 * 120.00208 * 120.00025 * 24 3 2 30 30 H 1.08001 * 120.00090 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99871 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.00042 * 180.02562 * 2 1 3 33 33 H 0.97001 * 119.99834 * 359.97438 * 7 5 3 34 34 H 1.09000 * 109.88592 * 338.86866 * 10 8 7 35 35 H 1.09007 * 109.88201 * 100.02989 * 10 8 7 36 36 H 0.96996 * 119.99950 * 180.02562 * 15 14 12 37 37 H 1.09005 * 110.36368 * 265.28503 * 20 11 10 38 38 H 1.09006 * 110.36594 * 142.96710 * 20 11 10 39 39 H 0.96696 * 114.00036 * 67.80742 * 23 21 20 40 40 H 1.07999 * 119.99957 * 0.02562 * 25 24 3 41 41 H 1.07995 * 120.00135 * 180.25331 * 26 25 24 42 42 H 1.08001 * 119.99881 * 179.77247 * 27 26 25 43 43 H 1.08000 * 120.00095 * 179.97438 * 28 27 26 44 44 H 1.07994 * 120.00052 * 0.02562 * 29 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9299 1.3850 1.2304 6 8 4.1325 1.4958 1.1191 7 7 2.3683 1.3332 2.4545 8 6 3.2107 1.4103 3.6507 9 1 4.0867 2.0314 3.4643 10 6 3.6263 -0.0006 4.1177 11 7 3.5728 -0.0075 5.5870 12 6 3.8496 -1.0811 6.3906 13 1 4.1366 -2.0249 5.9510 14 6 3.7613 -0.9563 7.7703 15 7 3.4110 0.1937 8.3060 16 14 4.1382 -2.4211 8.8667 17 1 5.5361 -2.8656 8.6354 18 1 3.9715 -2.0302 10.2895 19 1 3.2061 -3.5319 8.5464 20 6 3.1707 1.3325 6.0516 21 6 2.4008 1.9516 4.8584 22 1 2.4336 3.0405 4.8942 23 8 1.0512 1.4834 4.8213 24 6 2.9298 1.3850 -1.2305 25 6 3.9128 0.4373 -1.4464 26 6 4.7043 0.5078 -2.5776 27 6 4.5195 1.5318 -3.4877 28 6 3.5404 2.4827 -3.2689 29 6 2.7453 2.4092 -2.1404 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 1.4064 1.2448 2.5435 34 1 2.9345 -0.7422 3.7181 35 1 4.6405 -0.2183 3.7827 36 1 3.3497 0.2810 9.2701 37 1 4.0500 1.9318 6.2877 38 1 2.5200 1.2527 6.9225 39 1 0.5062 1.7957 5.5564 40 1 4.0596 -0.3606 -0.7336 41 1 5.4695 -0.2349 -2.7483 42 1 5.1404 1.5890 -4.3696 43 1 3.3963 3.2829 -3.9797 44 1 1.9807 3.1523 -1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221048525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:09 Heat of formation + Delta-G solvation = -5.415818 kcal Electronic energy + Delta-G solvation = -26351.057236 eV Core-core repulsion = 22655.788236 eV Total energy + Delta-G solvation = -3695.269000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32251 -38.91076 -37.74273 -35.19592 -34.72209 -33.90179 -31.63355 -31.27863 -30.90491 -28.70068 -27.58163 -26.47278 -24.40640 -22.76870 -21.97690 -20.97841 -20.53723 -19.91118 -19.50301 -17.51804 -17.11844 -16.82515 -16.61138 -15.59535 -15.32376 -15.10301 -14.84396 -14.47392 -14.41804 -14.11392 -13.80796 -13.42197 -13.10581 -13.05705 -12.91724 -12.72250 -12.44475 -12.34469 -11.75430 -11.52961 -11.32783 -11.19509 -11.09701 -10.95782 -10.83584 -10.60294 -10.38905 -10.14620 -10.03461 -9.83486 -9.34571 -9.18740 -8.90435 -8.75752 -8.70182 -8.64182 -6.84990 -5.69313 -3.09162 1.26504 1.39982 2.06842 2.82983 3.35644 3.40402 3.44006 3.45786 3.82503 4.46911 4.55751 4.61502 4.70023 4.82319 4.95633 4.97987 5.05740 5.11037 5.30104 5.36003 5.38990 5.46132 5.49631 5.57544 5.72470 5.75016 5.90268 5.93706 6.00791 6.06785 6.28695 6.38027 6.39541 6.46617 6.47870 6.56993 6.59459 6.69869 6.95299 6.96669 7.26072 7.55878 7.71409 7.84510 8.12300 8.31494 8.48049 9.18149 9.79214 10.42751 11.35723 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.003021 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.335192 B = 9266.130227 C = 9618.226581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.145 4.145 3 C -0.040 4.040 4 H 0.105 0.895 5 C 0.517 3.483 6 O -0.534 6.534 7 N -0.703 5.703 8 C 0.142 3.858 9 H 0.101 0.899 10 C 0.132 3.868 11 N -0.596 5.596 12 C -0.217 4.217 13 H 0.077 0.923 14 C -0.012 4.012 15 N -0.927 5.927 16 Si 0.917 3.083 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.127 3.873 21 C 0.067 3.933 22 H 0.058 0.942 23 O -0.561 6.561 24 C -0.059 4.059 25 C -0.080 4.080 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.126 4.126 29 C -0.112 4.112 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.408 0.592 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.253 0.747 37 H 0.022 0.978 38 H 0.115 0.885 39 H 0.379 0.621 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 5.359 -19.583 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.061 4.061 4 H 0.123 0.877 5 C 0.302 3.698 6 O -0.411 6.411 7 N -0.354 5.354 8 C 0.037 3.963 9 H 0.119 0.881 10 C 0.005 3.995 11 N -0.322 5.322 12 C -0.345 4.345 13 H 0.095 0.905 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.747 3.253 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.001 3.999 21 C 0.007 3.993 22 H 0.075 0.925 23 O -0.367 6.367 24 C -0.060 4.060 25 C -0.098 4.098 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.144 4.144 29 C -0.130 4.130 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.244 0.756 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.133 0.867 39 H 0.226 0.774 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.144 5.088 -19.957 21.228 hybrid contribution -0.317 -0.492 1.215 1.349 sum -5.461 4.596 -18.742 20.055 Atomic orbital electron populations 1.23904 0.95423 1.02395 0.99459 1.22606 0.95829 0.96753 1.01110 1.19474 0.96698 0.98370 0.91551 0.87720 1.20269 0.88636 0.76527 0.84386 1.90721 1.14702 1.49158 1.86519 1.45795 1.11579 1.73392 1.04678 1.22151 0.93279 0.98498 0.82402 0.88119 1.21580 0.97868 0.93614 0.86421 1.44271 1.80325 1.08713 0.98928 1.19051 1.38277 0.89596 0.87581 0.90490 1.24753 1.02147 0.97390 0.96423 1.69708 1.54822 1.22927 1.10209 0.86115 0.78136 0.81476 0.79568 1.21196 1.21566 1.21171 1.22599 0.97331 0.85009 0.94925 1.23586 0.82903 0.95756 0.97103 0.92459 1.86239 1.21622 1.77118 1.51678 1.19209 0.96545 0.95797 0.94434 1.20950 0.94103 0.98404 0.96360 1.21124 0.99568 0.98750 0.94610 1.21118 0.98312 0.95159 0.99403 1.21032 0.96435 0.99201 0.97686 1.20968 0.99905 0.97610 0.94560 0.88242 0.87713 0.86596 0.75624 0.95271 0.95552 0.93681 0.96029 0.86718 0.77384 0.86182 0.86151 0.86356 0.86239 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 14.32 29.01 0.42 -1.15 16 2 C -0.14 -1.55 8.19 -36.03 -0.30 -1.85 16 3 C -0.04 -0.47 2.67 -94.08 -0.25 -0.72 16 4 H 0.10 1.02 7.52 -51.93 -0.39 0.63 16 5 C 0.52 8.01 7.01 -10.98 -0.08 7.93 16 6 O -0.53 -10.18 14.73 5.56 0.08 -10.10 16 7 N -0.70 -11.01 4.97 -52.03 -0.26 -11.27 16 8 C 0.14 2.65 3.20 -66.10 -0.21 2.44 16 9 H 0.10 1.95 7.55 -51.93 -0.39 1.56 16 10 C 0.13 2.95 6.99 -3.07 -0.02 2.93 16 11 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 12 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 13 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 14 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 15 N -0.93 -26.51 10.09 55.49 0.56 -25.95 16 16 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.13 2.98 5.62 -2.53 -0.01 2.97 16 21 C 0.07 1.22 4.29 -24.58 -0.11 1.12 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 23 O -0.56 -9.45 12.24 -35.23 -0.43 -9.88 16 24 C -0.06 -0.74 4.39 -104.62 -0.46 -1.20 16 25 C -0.08 -1.04 8.03 -39.58 -0.32 -1.36 16 26 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 27 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 28 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 29 C -0.11 -1.23 9.67 -39.58 -0.38 -1.61 16 30 H 0.10 0.75 7.83 -52.49 -0.41 0.34 16 31 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 1.29 8.05 -52.48 -0.42 0.87 16 33 H 0.41 5.85 7.48 -40.82 -0.31 5.54 16 34 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 2.96 5.87 -51.93 -0.30 2.66 16 39 H 0.38 5.13 9.12 45.56 0.42 5.55 16 40 H 0.12 1.62 7.97 -52.49 -0.42 1.20 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.12 1.04 7.95 -52.49 -0.42 0.62 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -32.88 366.74 -8.85 -41.74 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.57 Total: 11.12 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.16 Total: -2.30 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.28 Total: -53.20 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.35 Total: -19.98 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.88 -8.85 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221048525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.319 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds