Wall clock time and date at job start Tue Mar 31 2020 11:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47441 * 2 1 4 4 N 1.46894 * 109.47351 * 182.68750 * 3 2 1 5 5 C 1.46895 * 111.00378 * 199.93016 * 4 3 2 6 6 C 1.50702 * 109.47039 * 66.03866 * 5 4 3 7 7 H 1.07994 * 120.00214 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99872 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99758 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47434 * 59.99580 * 10 8 6 12 12 H 1.48505 * 109.47199 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46912 * 299.99523 * 10 8 6 14 14 C 1.46901 * 111.00458 * 75.97058 * 4 3 2 15 15 C 1.50694 * 109.47410 * 189.73617 * 14 4 3 16 16 C 1.38226 * 120.42199 * 255.85699 * 15 14 4 17 17 N 1.31860 * 120.76316 * 180.26185 * 16 15 14 18 18 C 1.31883 * 121.72808 * 359.74709 * 17 16 15 19 19 C 1.50699 * 119.61795 * 179.97438 * 18 17 16 20 20 C 1.38194 * 120.76217 * 0.02562 * 18 17 16 21 21 C 1.38639 * 120.41845 * 75.62981 * 15 14 4 22 22 C 1.50696 * 120.78914 * 0.02562 * 21 15 14 23 23 F 1.39899 * 109.47230 * 175.99183 * 22 21 15 24 24 F 1.39904 * 109.47520 * 55.99466 * 22 21 15 25 25 F 1.39897 * 109.47130 * 295.99494 * 22 21 15 26 26 H 1.09003 * 109.47025 * 304.87745 * 1 2 3 27 27 H 1.09000 * 109.47078 * 64.87204 * 1 2 3 28 28 H 1.08996 * 109.47475 * 184.87256 * 1 2 3 29 29 H 1.09004 * 109.46649 * 239.99856 * 2 1 3 30 30 H 1.09004 * 109.47115 * 120.00037 * 2 1 3 31 31 H 1.08998 * 109.47018 * 62.67911 * 3 2 1 32 32 H 1.09005 * 109.46434 * 302.68140 * 3 2 1 33 33 H 1.08993 * 109.47815 * 186.04603 * 5 4 3 34 34 H 1.09007 * 109.46726 * 306.04284 * 5 4 3 35 35 H 0.96998 * 119.99435 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47021 * 69.73368 * 14 4 3 37 37 H 1.09001 * 109.47195 * 309.74165 * 14 4 3 38 38 H 1.07993 * 119.61725 * 0.02562 * 16 15 14 39 39 H 1.08997 * 109.47052 * 270.01722 * 19 18 17 40 40 H 1.08994 * 109.47030 * 30.01979 * 19 18 17 41 41 H 1.09004 * 109.46991 * 150.02120 * 19 18 17 42 42 H 1.08005 * 120.41602 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5076 1.4429 -0.0649 5 6 4.0547 2.7249 0.3989 6 6 3.7607 2.8948 1.8671 7 1 3.2217 2.1270 2.4023 8 6 4.1798 4.0304 2.5273 9 7 4.8358 4.9656 1.8754 10 14 3.8159 4.2407 4.3473 11 1 4.4430 3.1309 5.1090 12 1 4.3679 5.5373 4.8159 13 1 2.3469 4.2215 4.5638 14 6 3.9747 1.1315 -1.4224 15 6 5.4645 0.9055 -1.4016 16 6 6.3263 1.8758 -1.8773 17 7 7.6307 1.6831 -1.8671 18 6 8.1636 0.5697 -1.4027 19 6 9.6609 0.3993 -1.4142 20 6 7.3648 -0.4430 -0.9066 21 6 5.9882 -0.2764 -0.9008 22 6 5.0826 -1.3571 -0.3688 23 9 5.8476 -2.4726 -0.0116 24 9 4.1605 -1.7208 -1.3560 25 9 4.3990 -0.8812 0.7552 26 1 -0.3633 0.5877 0.8431 27 1 -0.3633 0.4364 -0.9304 28 1 -0.3634 -1.0239 0.0873 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.7165 1.9422 0.9130 32 1 1.6380 1.9699 -0.8650 33 1 5.1330 2.7385 0.2403 34 1 3.5950 3.5398 -0.1604 35 1 5.1309 5.7643 2.3400 36 1 3.7428 1.9642 -2.0865 37 1 3.4756 0.2312 -1.7808 38 1 5.9265 2.8009 -2.2654 39 1 9.9673 -0.0587 -2.3546 40 1 10.1382 1.3739 -1.3121 41 1 9.9602 -0.2405 -0.5840 42 1 7.8072 -1.3527 -0.5280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249514493.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:56 Heat of formation + Delta-G solvation = -118.918152 kcal Electronic energy + Delta-G solvation = -28344.340613 eV Core-core repulsion = 24102.293042 eV Total energy + Delta-G solvation = -4242.047571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.83766 -47.46518 -47.07322 -40.35289 -37.24478 -33.94879 -33.05023 -32.63940 -31.82091 -28.92050 -27.13282 -26.32576 -25.38742 -23.97261 -22.65829 -21.56647 -21.05190 -19.84811 -18.30757 -18.06875 -17.69569 -16.53285 -16.19213 -15.65946 -14.88829 -14.81881 -14.71753 -14.41043 -14.21248 -14.12198 -13.96628 -13.84483 -13.59891 -13.36097 -13.27312 -13.12208 -12.78294 -12.43620 -12.37027 -12.15687 -11.97214 -11.88790 -11.68489 -11.50929 -11.28520 -11.01805 -10.81321 -10.73097 -10.31833 -10.01002 -9.93436 -9.80829 -9.39717 -9.21055 -8.67047 -8.42986 -7.31629 -6.03134 -4.03647 1.02219 1.15818 2.90578 3.33069 3.37240 3.40449 3.68797 3.94352 4.24984 4.37451 4.42067 4.72815 4.80760 4.88591 4.99567 5.11297 5.32501 5.38480 5.39339 5.46060 5.55608 5.58582 5.62584 5.77136 5.84011 5.88621 5.96453 6.02003 6.06178 6.24419 6.26630 6.29718 6.43914 6.69702 6.73571 6.83870 7.23690 7.29413 7.77882 8.02166 8.04449 8.15647 8.50113 9.03298 9.60058 11.07608 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.010092 B = 0.006374 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.875321 B = 4392.070912 C = 5915.932862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.064 3.936 4 N -0.525 5.525 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.073 3.927 15 C -0.067 4.067 16 C 0.122 3.878 17 N -0.462 5.462 18 C 0.118 3.882 19 C -0.100 4.100 20 C -0.133 4.133 21 C -0.116 4.116 22 C 0.510 3.490 23 F -0.187 7.187 24 F -0.180 7.180 25 F -0.138 7.138 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.020 0.980 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.261 0.739 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -12.015 -8.360 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.064 4.064 4 N -0.249 5.249 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.056 4.056 15 C -0.070 4.070 16 C -0.036 4.036 17 N -0.171 5.171 18 C -0.020 4.020 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.126 4.126 22 C 0.456 3.544 23 F -0.168 7.168 24 F -0.162 7.162 25 F -0.119 7.119 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.181 0.819 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.870 -11.567 -8.314 14.531 hybrid contribution -1.133 0.127 0.944 1.480 sum 1.737 -11.440 -7.371 13.720 Atomic orbital electron populations 1.21727 0.96574 1.00880 1.01430 1.21585 0.94390 0.97919 1.01976 1.22034 0.87628 0.95325 1.01409 1.62233 1.08037 1.37205 1.17467 1.19767 0.95216 0.82612 0.95623 1.21079 1.35944 1.03402 0.93943 0.91853 1.24963 0.95324 0.95885 0.98310 1.69943 1.38582 1.08830 1.36297 0.86600 0.78565 0.77200 0.85293 1.20226 1.21401 1.20270 1.21260 0.89201 1.01546 0.93555 1.20639 0.98247 0.92587 0.95492 1.22730 0.87765 0.97823 0.95311 1.67519 1.13893 1.21591 1.14111 1.21216 0.97123 0.89037 0.94612 1.20681 0.88759 1.03619 1.02671 1.21733 0.92134 1.01114 1.00315 1.20196 0.94192 0.95553 1.02664 1.18085 0.79187 0.80227 0.76899 1.93129 1.75759 1.55640 1.92321 1.93133 1.68181 1.92369 1.62469 1.93406 1.79874 1.87460 1.51170 0.92690 0.93364 0.93318 0.92977 0.91378 0.89259 0.96198 0.95107 0.99131 0.92918 0.93830 0.89675 0.81894 0.90476 0.90186 0.90633 0.83828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.91 5.79 -26.73 -0.15 -2.06 16 3 C 0.06 1.20 4.82 -3.83 -0.02 1.18 16 4 N -0.53 -10.73 2.68 -237.53 -0.64 -11.37 16 5 C 0.19 4.82 4.58 -4.98 -0.02 4.79 16 6 C -0.51 -13.91 8.23 -34.44 -0.28 -14.20 16 7 H 0.06 1.74 7.31 -52.49 -0.38 1.36 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.07 1.26 4.26 -4.98 -0.02 1.24 16 15 C -0.07 -1.15 4.44 -104.48 -0.46 -1.62 16 16 C 0.12 2.08 9.95 -17.54 -0.17 1.91 16 17 N -0.46 -7.77 10.27 -9.47 -0.10 -7.87 16 18 C 0.12 1.72 6.78 -82.59 -0.56 1.16 16 19 C -0.10 -1.05 10.17 36.01 0.37 -0.69 16 20 C -0.13 -1.93 9.13 -39.44 -0.36 -2.29 16 21 C -0.12 -1.91 5.40 -104.32 -0.56 -2.47 16 22 C 0.51 8.18 2.90 36.00 0.10 8.29 16 23 F -0.19 -2.75 16.09 2.25 0.04 -2.71 16 24 F -0.18 -2.73 14.99 2.25 0.03 -2.70 16 25 F -0.14 -2.58 14.53 2.25 0.03 -2.55 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.79 6.48 -51.93 -0.34 0.46 16 30 H 0.07 1.16 7.63 -51.93 -0.40 0.76 16 31 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 32 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 33 H 0.03 0.83 6.32 -51.93 -0.33 0.50 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.04 0.72 7.96 -51.93 -0.41 0.31 16 37 H 0.09 1.36 4.55 -51.93 -0.24 1.12 16 38 H 0.16 2.59 8.01 -52.49 -0.42 2.17 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.14 1.70 7.27 -52.48 -0.38 1.31 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -30.10 349.86 -7.27 -37.37 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.74 Total: -1.64 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.88 Total: -4.85 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.00 Total: -44.89 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.10 Total: -7.96 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.10 -7.27 -37.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249514493.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.547 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds