Wall clock time and date at job start Tue Mar 31 2020 10:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46821 * 2 1 4 4 H 1.08997 * 109.47271 * 184.45474 * 3 2 1 5 5 C 1.50693 * 109.47513 * 304.45946 * 3 2 1 6 6 H 1.08002 * 120.00396 * 115.14048 * 5 3 2 7 7 C 1.37877 * 120.00217 * 295.14990 * 5 3 2 8 8 N 1.31520 * 119.99644 * 352.97152 * 7 5 3 9 9 Si 1.86801 * 120.00418 * 172.97410 * 7 5 3 10 10 H 1.48495 * 109.47015 * 269.99677 * 9 7 5 11 11 H 1.48502 * 109.46785 * 29.99717 * 9 7 5 12 12 H 1.48498 * 109.47004 * 149.99918 * 9 7 5 13 13 N 1.46901 * 109.46787 * 64.45953 * 3 2 1 14 14 C 1.46901 * 110.99951 * 85.29978 * 13 3 2 15 15 C 1.52998 * 109.47047 * 184.97906 * 14 13 3 16 16 C 1.52999 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47537 * 180.02562 * 16 15 14 18 18 C 1.38224 * 120.42019 * 269.72936 * 17 16 15 19 19 N 1.31858 * 120.76250 * 179.73062 * 18 17 16 20 20 C 1.31883 * 121.72433 * 0.57096 * 19 18 17 21 21 C 1.38181 * 120.76583 * 359.68894 * 20 19 18 22 22 C 1.50700 * 120.41803 * 180.02562 * 21 20 19 23 23 F 1.39893 * 109.47575 * 269.97854 * 22 21 20 24 24 F 1.39900 * 109.46891 * 29.98393 * 22 21 20 25 25 F 1.39905 * 109.47038 * 149.97872 * 22 21 20 26 26 C 1.38628 * 120.41560 * 89.99691 * 17 16 15 27 27 H 1.08996 * 109.46654 * 185.53548 * 1 2 3 28 28 H 1.08994 * 109.46982 * 305.53210 * 1 2 3 29 29 H 1.08995 * 109.46775 * 65.53618 * 1 2 3 30 30 H 1.08997 * 109.47353 * 240.00886 * 2 1 3 31 31 H 1.08993 * 109.47475 * 119.99932 * 2 1 3 32 32 H 0.96994 * 120.00256 * 356.30669 * 8 7 5 33 33 H 1.00897 * 111.00382 * 209.25112 * 13 3 2 34 34 H 1.08995 * 109.47240 * 304.97682 * 14 13 3 35 35 H 1.08994 * 109.47252 * 64.98094 * 14 13 3 36 36 H 1.08997 * 109.47555 * 300.00361 * 15 14 13 37 37 H 1.09005 * 109.47544 * 60.00441 * 15 14 13 38 38 H 1.09001 * 109.47605 * 299.99807 * 16 15 14 39 39 H 1.09004 * 109.47098 * 60.00218 * 16 15 14 40 40 H 1.07993 * 119.61827 * 0.02562 * 18 17 16 41 41 H 1.08002 * 119.61550 * 179.70618 * 20 19 18 42 42 H 1.07997 * 120.79594 * 359.95942 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1270 1.4437 -0.0798 5 6 1.4495 2.1842 -1.1714 6 1 0.7752 3.0109 -1.0029 7 6 1.7699 1.8073 -2.4584 8 7 2.6940 0.8947 -2.6655 9 14 0.8916 2.5929 -3.9078 10 1 -0.3186 1.8000 -4.2422 11 1 0.4931 3.9788 -3.5531 12 1 1.8022 2.6244 -5.0804 13 7 1.6402 2.1032 1.2497 14 6 2.6091 1.8344 2.3206 15 6 2.0978 2.4324 3.6328 16 6 3.1066 2.1519 4.7484 17 6 2.6028 2.7403 6.0411 18 6 2.9322 4.0350 6.3961 19 7 2.4908 4.5584 7.5229 20 6 1.7331 3.8722 8.3563 21 6 1.3674 2.5707 8.0707 22 6 0.5008 1.7940 9.0283 23 9 1.3109 1.1143 9.9442 24 9 -0.3413 2.6753 9.7149 25 9 -0.2718 0.8714 8.3148 26 6 1.8077 1.9881 6.8918 27 1 -0.3632 -1.0229 0.0991 28 1 -0.3633 0.5972 0.8363 29 1 -0.3633 0.4256 -0.9354 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1876 0.5256 -1.9166 33 1 1.5198 3.0954 1.1118 34 1 2.7335 0.7578 2.4362 35 1 3.5677 2.2856 2.0649 36 1 1.9733 3.5090 3.5174 37 1 1.1391 1.9811 3.8887 38 1 3.2307 1.0751 4.8639 39 1 4.0656 2.6028 4.4929 40 1 3.5543 4.6262 5.7406 41 1 1.3943 4.3331 9.2724 42 1 1.5373 0.9727 6.6423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:35 Heat of formation + Delta-G solvation = -140.051083 kcal Electronic energy + Delta-G solvation = -25715.693153 eV Core-core repulsion = 21472.729190 eV Total energy + Delta-G solvation = -4242.963964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.53966 -48.05230 -48.00429 -40.82359 -37.01873 -35.29546 -33.48071 -32.89074 -31.10669 -29.76444 -26.82146 -26.46691 -24.67217 -23.65116 -23.40767 -22.08157 -21.06152 -19.31798 -18.88045 -18.87427 -18.47033 -17.34763 -16.99585 -16.82830 -15.19698 -14.97801 -14.85437 -14.77066 -14.49104 -14.44588 -14.21822 -14.15056 -13.99130 -13.75210 -13.72008 -13.58238 -13.47582 -13.31186 -12.72183 -12.25552 -12.10604 -12.08814 -11.43206 -11.15526 -11.01453 -10.82859 -10.72230 -10.46715 -10.15369 -10.09373 -10.03628 -9.92586 -9.72205 -9.46308 -8.53809 -8.35286 -7.42689 -6.38550 -4.09551 0.28498 0.68688 2.21634 3.09789 3.26069 3.42015 3.43548 3.56949 3.59548 3.94842 4.00905 4.28249 4.33050 4.45026 4.49784 4.62991 4.89452 5.02692 5.11908 5.33927 5.38725 5.45277 5.48621 5.59354 5.76152 5.87389 5.96188 6.06500 6.26404 6.34200 6.39446 6.43829 6.59719 6.94120 7.03924 7.25962 7.35007 7.44715 7.52853 7.85061 8.06736 8.48352 8.55004 8.84035 9.60848 10.98363 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.002297 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.976808 B =12188.620694 C =12645.181099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.009 1.009 5 C -0.594 4.594 6 H 0.054 0.946 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 1.067 2.933 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.079 4.079 17 C -0.122 4.122 18 C 0.133 3.867 19 N -0.477 5.477 20 C 0.143 3.857 21 C -0.238 4.238 22 C 0.516 3.484 23 F -0.175 7.175 24 F -0.175 7.175 25 F -0.173 7.173 26 C -0.024 4.024 27 H 0.016 0.984 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.270 0.730 33 H 0.333 0.667 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 2.859 23.260 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C 0.096 3.904 4 H 0.009 0.991 5 C -0.633 4.633 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.547 5.547 9 Si 0.895 3.105 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.071 4.071 15 C -0.147 4.147 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.024 4.024 19 N -0.185 5.185 20 C -0.015 4.015 21 C -0.241 4.241 22 C 0.461 3.539 23 F -0.157 7.157 24 F -0.156 7.156 25 F -0.155 7.155 26 C -0.049 4.049 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.184 0.816 41 H 0.183 0.817 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.854 3.169 22.013 22.256 hybrid contribution 0.454 -0.505 1.390 1.547 sum -0.399 2.664 23.402 23.557 Atomic orbital electron populations 1.21416 0.96491 0.97482 1.02173 1.21479 0.96380 0.98277 0.98234 1.19223 0.93031 0.91724 0.86426 0.99137 1.21980 1.31049 1.18397 0.91866 0.92824 1.25696 0.96356 0.95927 1.00115 1.70763 1.21258 1.27064 1.35603 0.83578 0.75877 0.75504 0.75525 1.21358 1.21524 1.21194 1.60538 1.46725 1.16033 1.07923 1.21897 0.93713 1.00027 0.91439 1.21568 0.98425 1.01264 0.93470 1.20630 0.99590 1.01398 0.90089 1.21044 0.98156 0.95463 0.97769 1.23075 0.94669 0.92233 0.92418 1.67907 1.10087 1.36574 1.03889 1.22607 0.91572 0.89002 0.98311 1.21052 1.06271 0.98313 0.98501 1.18068 0.78579 0.77639 0.79603 1.93236 1.72896 1.81018 1.68512 1.93203 1.72763 1.68619 1.81029 1.93225 1.76521 1.67771 1.77960 1.21375 0.92266 1.00619 0.90683 0.96515 0.93063 0.92479 0.92435 0.96261 0.91827 0.84936 0.91883 0.96338 0.92039 0.91162 0.90202 0.90079 0.81570 0.81695 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.43 37.16 0.35 -2.24 16 2 C -0.10 -2.43 5.51 -26.73 -0.15 -2.58 16 3 C 0.20 4.88 1.93 -68.86 -0.13 4.75 16 4 H -0.01 -0.23 7.22 -51.93 -0.37 -0.61 16 5 C -0.59 -15.79 7.13 -34.44 -0.25 -16.04 16 6 H 0.05 1.44 7.67 -52.49 -0.40 1.03 16 7 C 0.02 0.65 5.26 -17.82 -0.09 0.56 16 8 N -0.91 -26.50 12.95 55.43 0.72 -25.78 16 9 Si 1.07 24.60 29.91 -169.99 -5.08 19.52 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -13.55 5.62 -107.96 -0.61 -14.15 16 14 C 0.06 0.94 5.46 -3.82 -0.02 0.92 16 15 C -0.11 -1.32 5.50 -26.73 -0.15 -1.46 16 16 C -0.08 -0.72 5.37 -27.88 -0.15 -0.87 16 17 C -0.12 -1.11 5.15 -104.48 -0.54 -1.65 16 18 C 0.13 1.21 10.86 -17.55 -0.19 1.02 16 19 N -0.48 -4.87 10.36 -13.25 -0.14 -5.01 16 20 C 0.14 1.29 10.56 -17.55 -0.19 1.11 16 21 C -0.24 -2.16 5.46 -104.48 -0.57 -2.73 16 22 C 0.52 4.64 3.38 36.01 0.12 4.77 16 23 F -0.18 -1.63 17.30 2.25 0.04 -1.59 16 24 F -0.17 -1.57 16.49 2.25 0.04 -1.53 16 25 F -0.17 -1.71 16.53 2.25 0.04 -1.67 16 26 C -0.02 -0.21 9.21 -39.28 -0.36 -0.58 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 1.08 7.59 -51.93 -0.39 0.69 16 29 H 0.06 1.35 7.31 -51.93 -0.38 0.97 16 30 H 0.06 1.46 6.35 -51.93 -0.33 1.13 16 31 H 0.02 0.40 7.33 -51.93 -0.38 0.02 16 32 H 0.27 7.85 6.03 -40.82 -0.25 7.60 16 33 H 0.33 6.62 8.30 -39.29 -0.33 6.30 16 34 H 0.06 1.03 7.30 -51.93 -0.38 0.65 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.17 1.13 7.61 -52.49 -0.40 0.73 16 42 H 0.15 1.17 7.69 -52.49 -0.40 0.77 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -29.26 357.89 -7.68 -36.94 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.77 Total: 2.90 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.31 Total: -15.02 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.03 Total: -44.94 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.11 Total: -4.79 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.26 -7.68 -36.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.109 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds