Wall clock time and date at job start Tue Mar 31 2020 10:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46821 * 2 1 4 4 H 1.08997 * 109.47271 * 184.45474 * 3 2 1 5 5 C 1.50693 * 109.47513 * 304.45946 * 3 2 1 6 6 H 1.08002 * 120.00396 * 115.14048 * 5 3 2 7 7 C 1.37877 * 120.00217 * 295.14990 * 5 3 2 8 8 N 1.31520 * 119.99644 * 352.97152 * 7 5 3 9 9 Si 1.86801 * 120.00418 * 172.97410 * 7 5 3 10 10 H 1.48495 * 109.47015 * 269.99677 * 9 7 5 11 11 H 1.48502 * 109.46785 * 29.99717 * 9 7 5 12 12 H 1.48498 * 109.47004 * 149.99918 * 9 7 5 13 13 N 1.46901 * 109.46787 * 64.45953 * 3 2 1 14 14 C 1.46901 * 110.99951 * 85.29978 * 13 3 2 15 15 C 1.52998 * 109.47047 * 184.97906 * 14 13 3 16 16 C 1.52999 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47537 * 180.02562 * 16 15 14 18 18 C 1.38224 * 120.42019 * 269.72936 * 17 16 15 19 19 N 1.31858 * 120.76250 * 179.73062 * 18 17 16 20 20 C 1.31883 * 121.72433 * 0.57096 * 19 18 17 21 21 C 1.38181 * 120.76583 * 359.68894 * 20 19 18 22 22 C 1.50700 * 120.41803 * 180.02562 * 21 20 19 23 23 F 1.39893 * 109.47575 * 269.97854 * 22 21 20 24 24 F 1.39900 * 109.46891 * 29.98393 * 22 21 20 25 25 F 1.39905 * 109.47038 * 149.97872 * 22 21 20 26 26 C 1.38628 * 120.41560 * 89.99691 * 17 16 15 27 27 H 1.08996 * 109.46654 * 185.53548 * 1 2 3 28 28 H 1.08994 * 109.46982 * 305.53210 * 1 2 3 29 29 H 1.08995 * 109.46775 * 65.53618 * 1 2 3 30 30 H 1.08997 * 109.47353 * 240.00886 * 2 1 3 31 31 H 1.08993 * 109.47475 * 119.99932 * 2 1 3 32 32 H 0.96994 * 120.00256 * 356.30669 * 8 7 5 33 33 H 1.00897 * 111.00382 * 209.25112 * 13 3 2 34 34 H 1.08995 * 109.47240 * 304.97682 * 14 13 3 35 35 H 1.08994 * 109.47252 * 64.98094 * 14 13 3 36 36 H 1.08997 * 109.47555 * 300.00361 * 15 14 13 37 37 H 1.09005 * 109.47544 * 60.00441 * 15 14 13 38 38 H 1.09001 * 109.47605 * 299.99807 * 16 15 14 39 39 H 1.09004 * 109.47098 * 60.00218 * 16 15 14 40 40 H 1.07993 * 119.61827 * 0.02562 * 18 17 16 41 41 H 1.08002 * 119.61550 * 179.70618 * 20 19 18 42 42 H 1.07997 * 120.79594 * 359.95942 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1270 1.4437 -0.0798 5 6 1.4495 2.1842 -1.1714 6 1 0.7752 3.0109 -1.0029 7 6 1.7699 1.8073 -2.4584 8 7 2.6940 0.8947 -2.6655 9 14 0.8916 2.5929 -3.9078 10 1 -0.3186 1.8000 -4.2422 11 1 0.4931 3.9788 -3.5531 12 1 1.8022 2.6244 -5.0804 13 7 1.6402 2.1032 1.2497 14 6 2.6091 1.8344 2.3206 15 6 2.0978 2.4324 3.6328 16 6 3.1066 2.1519 4.7484 17 6 2.6028 2.7403 6.0411 18 6 2.9322 4.0350 6.3961 19 7 2.4908 4.5584 7.5229 20 6 1.7331 3.8722 8.3563 21 6 1.3674 2.5707 8.0707 22 6 0.5008 1.7940 9.0283 23 9 1.3109 1.1143 9.9442 24 9 -0.3413 2.6753 9.7149 25 9 -0.2718 0.8714 8.3148 26 6 1.8077 1.9881 6.8918 27 1 -0.3632 -1.0229 0.0991 28 1 -0.3633 0.5972 0.8363 29 1 -0.3633 0.4256 -0.9354 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1876 0.5256 -1.9166 33 1 1.5198 3.0954 1.1118 34 1 2.7335 0.7578 2.4362 35 1 3.5677 2.2856 2.0649 36 1 1.9733 3.5090 3.5174 37 1 1.1391 1.9811 3.8887 38 1 3.2307 1.0751 4.8639 39 1 4.0656 2.6028 4.4929 40 1 3.5543 4.6262 5.7406 41 1 1.3943 4.3331 9.2724 42 1 1.5373 0.9727 6.6423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:35 Heat of formation + Delta-G solvation = -155.917127 kcal Electronic energy + Delta-G solvation = -25716.381156 eV Core-core repulsion = 21472.729190 eV Total energy + Delta-G solvation = -4243.651967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.25895 -48.77423 -48.72684 -41.51511 -38.61705 -36.47382 -34.48894 -34.08849 -32.81491 -31.02479 -27.99500 -27.49306 -26.12453 -25.29993 -24.34792 -23.07995 -22.04142 -21.17268 -19.59497 -19.59248 -19.19103 -18.91083 -17.99456 -17.57916 -16.57841 -16.21496 -15.77635 -15.67783 -15.52236 -15.44081 -15.17238 -15.11484 -15.10175 -14.94664 -14.87510 -14.80165 -14.27243 -14.19907 -13.99656 -13.82915 -13.32584 -13.15275 -13.03006 -12.68344 -12.62364 -12.26238 -12.05626 -11.94479 -11.72957 -11.60261 -11.53133 -11.17592 -10.72100 -10.56625 -10.41336 -10.18354 -9.09728 -8.55774 -6.26773 -0.39597 -0.00706 1.51119 1.55097 1.61897 1.78923 2.40049 2.56357 2.58423 2.86378 3.22986 3.29018 3.30938 3.49459 3.63108 3.70516 3.81875 3.92051 4.15000 4.27667 4.38365 4.48219 4.54774 4.61058 4.62026 4.71273 4.76466 4.77042 4.91620 4.97111 5.06005 5.21409 5.29944 5.33191 5.39473 5.44516 5.55939 5.70283 5.93120 6.12674 6.52769 6.63910 6.66848 6.87014 7.51776 8.81455 Molecular weight = 316.15amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.002297 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.976808 B =12188.620694 C =12645.181099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.208 3.792 4 H -0.040 1.040 5 C -0.597 4.597 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.937 5.937 9 Si 1.108 2.892 10 H -0.277 1.277 11 H -0.271 1.271 12 H -0.288 1.288 13 N -0.680 5.680 14 C 0.060 3.940 15 C -0.096 4.096 16 C -0.069 4.069 17 C -0.125 4.125 18 C 0.129 3.871 19 N -0.497 5.497 20 C 0.141 3.859 21 C -0.243 4.243 22 C 0.521 3.479 23 F -0.177 7.177 24 F -0.175 7.175 25 F -0.179 7.179 26 C -0.028 4.028 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.037 0.963 32 H 0.259 0.741 33 H 0.333 0.667 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.184 0.816 41 H 0.183 0.817 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.148 3.371 24.352 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.098 3.902 4 H -0.023 1.023 5 C -0.636 4.636 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.203 1.203 11 H -0.196 1.196 12 H -0.214 1.214 13 N -0.310 5.310 14 C -0.070 4.070 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.127 4.127 18 C -0.027 4.027 19 N -0.205 5.205 20 C -0.017 4.017 21 C -0.246 4.246 22 C 0.466 3.534 23 F -0.159 7.159 24 F -0.156 7.156 25 F -0.160 7.160 26 C -0.053 4.053 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.201 0.799 41 H 0.200 0.800 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.487 3.685 23.139 23.478 hybrid contribution 0.667 -0.658 1.139 1.475 sum -0.820 3.027 24.278 24.480 Atomic orbital electron populations 1.21303 0.95217 0.98939 1.01099 1.21379 0.97377 0.97501 0.97681 1.19049 0.90936 0.92478 0.87690 1.02275 1.22270 1.30273 1.18122 0.92887 0.93226 1.26958 0.96375 0.95846 1.03102 1.70874 1.22712 1.28720 1.35144 0.83030 0.75187 0.75797 0.72813 1.20298 1.19614 1.21419 1.60491 1.47862 1.15704 1.06926 1.21981 0.92944 1.00155 0.91908 1.21406 0.98789 1.00963 0.92204 1.20517 0.99141 1.02101 0.88993 1.20979 0.98497 0.95508 0.97718 1.23403 0.94460 0.92445 0.92351 1.67953 1.10853 1.37151 1.04521 1.22921 0.91019 0.89023 0.98714 1.21067 1.06517 0.98430 0.98623 1.18017 0.78440 0.77465 0.79493 1.93233 1.72940 1.81088 1.68598 1.93203 1.72778 1.68574 1.81031 1.93213 1.76682 1.68003 1.78092 1.21575 0.91951 1.01148 0.90642 0.94143 0.92365 0.94821 0.95241 0.94480 0.93081 0.84999 0.92237 0.96557 0.91754 0.91723 0.89439 0.88843 0.79869 0.80034 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.43 71.98 0.68 -3.93 16 2 C -0.10 -4.65 5.51 30.60 0.17 -4.48 16 3 C 0.21 10.00 1.93 44.17 0.09 10.08 16 4 H -0.04 -2.16 7.22 -2.39 -0.02 -2.18 16 5 C -0.60 -31.84 7.13 25.60 0.18 -31.66 16 6 H 0.05 2.64 7.67 -2.91 -0.02 2.62 16 7 C -0.02 -1.32 5.26 84.65 0.45 -0.87 16 8 N -0.94 -55.53 12.95 21.45 0.28 -55.26 16 9 Si 1.11 49.27 29.91 68.60 2.05 51.32 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.68 -26.54 5.62 -495.47 -2.78 -29.32 16 14 C 0.06 1.82 5.46 86.30 0.47 2.30 16 15 C -0.10 -2.12 5.50 30.59 0.17 -1.95 16 16 C -0.07 -1.10 5.37 29.85 0.16 -0.94 16 17 C -0.13 -2.01 5.15 -19.77 -0.10 -2.11 16 18 C 0.13 2.11 10.86 84.69 0.92 3.03 16 19 N -0.50 -9.32 10.36 -195.85 -2.03 -11.35 16 20 C 0.14 2.32 10.56 84.67 0.89 3.21 16 21 C -0.24 -4.03 5.46 -19.77 -0.11 -4.14 16 22 C 0.52 8.65 3.38 71.24 0.24 8.89 16 23 F -0.18 -3.07 17.30 44.97 0.78 -2.29 16 24 F -0.17 -2.89 16.49 44.97 0.74 -2.15 16 25 F -0.18 -3.28 16.53 44.97 0.74 -2.53 16 26 C -0.03 -0.45 9.21 22.47 0.21 -0.24 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 2.37 7.59 -2.39 -0.02 2.35 16 29 H 0.03 1.56 7.31 -2.39 -0.02 1.54 16 30 H 0.03 1.51 6.35 -2.39 -0.02 1.49 16 31 H 0.04 1.54 7.33 -2.39 -0.02 1.53 16 32 H 0.26 15.52 6.03 -92.71 -0.56 14.96 16 33 H 0.33 12.99 8.30 -89.70 -0.74 12.25 16 34 H 0.06 1.86 7.30 -2.39 -0.02 1.85 16 35 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 39 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 40 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.18 2.19 7.61 -2.91 -0.02 2.17 16 42 H 0.16 2.19 7.69 -2.91 -0.02 2.17 16 Total: -1.00 -62.45 357.89 4.70 -57.75 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.51 Total: 16.64 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.41 Total: -22.80 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -4.53 Total: -95.93 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 2.26 Total: -6.98 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.32 kcal Total: -62.45 4.70 -57.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.172 kcal (2) G-P(sol) polarization free energy of solvation -62.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds