Wall clock time and date at job start Tue Mar 31 2020 10:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47490 * 2 1 4 4 H 1.09011 * 109.46680 * 303.40853 * 3 2 1 5 5 C 1.50702 * 109.47217 * 183.41138 * 3 2 1 6 6 H 1.07999 * 119.99647 * 239.99549 * 5 3 2 7 7 C 1.37871 * 119.99858 * 59.99467 * 5 3 2 8 8 N 1.31513 * 120.00651 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99819 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47223 * 90.00121 * 9 7 5 11 11 H 1.48498 * 109.47174 * 210.00172 * 9 7 5 12 12 H 1.48504 * 109.46924 * 330.00018 * 9 7 5 13 13 N 1.46898 * 109.47218 * 63.40652 * 3 2 1 14 14 C 1.46906 * 110.99749 * 205.97913 * 13 3 2 15 15 H 1.09001 * 109.47296 * 322.74226 * 14 13 3 16 16 C 1.53006 * 109.46903 * 202.74546 * 14 13 3 17 17 C 1.50693 * 109.47282 * 64.99474 * 16 14 13 18 18 C 1.38356 * 119.85160 * 269.72765 * 17 16 14 19 19 C 1.37955 * 120.15467 * 179.76589 * 18 17 16 20 20 C 1.39634 * 119.84177 * 0.53146 * 19 18 17 21 21 C 1.43202 * 120.15194 * 179.70340 * 20 19 18 22 22 N 8.68484 * 137.19933 * 57.23821 * 2 1 3 23 23 C 1.39635 * 119.69898 * 359.72233 * 20 19 18 24 24 C 1.37942 * 119.84942 * 359.97438 * 23 20 19 25 25 C 1.50698 * 109.47225 * 82.74560 * 14 13 3 26 26 O 1.20826 * 120.00135 * 26.46772 * 25 14 13 27 27 O 1.34224 * 119.99863 * 206.47582 * 25 14 13 28 28 C 1.45202 * 117.00114 * 179.97438 * 27 25 14 29 29 H 1.08998 * 109.46616 * 300.73693 * 1 2 3 30 30 H 1.08997 * 109.46404 * 60.72909 * 1 2 3 31 31 H 1.08997 * 109.47324 * 180.73223 * 1 2 3 32 32 H 1.08997 * 109.46861 * 239.99127 * 2 1 3 33 33 H 1.09001 * 109.46883 * 119.99795 * 2 1 3 34 34 H 0.96995 * 120.00394 * 179.97438 * 8 7 5 35 35 H 1.00892 * 111.00089 * 82.02841 * 13 3 2 36 36 H 1.09007 * 109.46255 * 304.99772 * 16 14 13 37 37 H 1.08994 * 109.46653 * 185.00311 * 16 14 13 38 38 H 1.07997 * 119.92416 * 359.97438 * 18 17 16 39 39 H 1.07995 * 120.08268 * 180.25494 * 19 18 17 40 40 H 1.08000 * 120.07453 * 179.97438 * 23 20 19 41 41 H 1.07995 * 119.92842 * 179.97438 * 24 23 20 42 42 H 1.09001 * 109.47361 * 179.97438 * 28 27 25 43 43 H 1.08995 * 109.46956 * 299.99716 * 28 27 25 44 44 H 1.08997 * 109.47029 * 59.99965 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6277 1.9736 -0.8580 5 6 3.5448 1.4432 -0.0845 6 1 4.1296 1.8950 0.7030 7 6 4.1747 0.8671 -1.1672 8 7 3.4626 0.3173 -2.1265 9 14 6.0398 0.8674 -1.2717 10 1 6.5720 -0.3588 -0.6248 11 1 6.4558 0.8955 -2.6969 12 1 6.5742 2.0658 -0.5763 13 7 1.6189 2.1108 1.2384 14 6 1.5225 3.5640 1.0458 15 1 2.3247 3.8973 0.3875 16 6 1.6477 4.2672 2.3989 17 6 3.0250 4.0302 2.9626 18 6 3.2572 2.9353 3.7759 19 6 4.5168 2.7097 4.2914 20 6 5.5559 3.5956 3.9997 21 6 6.8644 3.3713 4.5364 22 7 7.9023 3.1933 4.9622 23 6 5.3132 4.7015 3.1825 24 6 4.0504 4.9116 2.6686 25 6 0.1910 3.9012 0.4257 26 8 -0.7570 3.1717 0.5962 27 8 0.0583 5.0120 -0.3161 28 6 -1.2528 5.2734 -0.8828 29 1 -0.3632 0.5252 0.8833 30 1 -0.3632 0.5025 -0.8965 31 1 -0.3634 -1.0275 0.0131 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9057 -0.0877 -2.8883 35 1 2.2422 1.8876 1.9998 36 1 0.9006 3.8692 3.0856 37 1 1.4877 5.3374 2.2682 38 1 2.4514 2.2538 4.0049 39 1 4.6977 1.8524 4.9227 40 1 6.1124 5.3909 2.9533 41 1 3.8612 5.7668 2.0368 42 1 -1.2223 6.1992 -1.4573 43 1 -1.5370 4.4490 -1.5366 44 1 -1.9834 5.3687 -0.0796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:54 Heat of formation + Delta-G solvation = -38.062432 kcal Electronic energy + Delta-G solvation = -26868.305692 eV Core-core repulsion = 23171.621029 eV Total energy + Delta-G solvation = -3696.684663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22938 -39.48658 -37.04802 -36.31027 -35.61008 -34.00322 -31.91264 -31.12331 -30.91068 -28.83970 -27.51951 -26.09509 -24.50679 -22.91138 -22.58042 -21.95327 -19.91889 -19.52789 -18.91448 -17.37475 -16.64933 -16.35120 -15.79609 -15.67445 -15.35026 -14.82239 -14.58022 -14.38101 -14.03070 -13.80323 -13.51396 -13.44042 -12.98405 -12.90240 -12.82517 -12.70934 -12.56681 -12.17182 -11.86438 -11.70248 -11.47004 -11.37379 -11.22733 -11.06641 -11.02557 -10.88958 -10.69294 -10.44577 -10.26740 -9.89063 -9.58286 -9.53003 -9.09282 -9.01161 -8.71450 -8.42137 -7.46683 -6.04838 -4.18138 0.74670 1.35352 2.65289 2.69843 2.90273 3.12001 3.24553 3.32456 3.34865 3.84353 3.92432 4.35614 4.69624 4.75685 4.86567 5.01334 5.22028 5.23892 5.27870 5.31882 5.34080 5.38281 5.45937 5.60365 5.69045 5.73184 5.81769 5.98745 6.17437 6.21217 6.28148 6.44886 6.54330 6.60128 6.74933 6.79281 6.81300 7.05892 7.28854 7.37018 7.46615 7.54047 7.74375 7.92627 8.04008 8.18757 8.33895 8.50180 8.92422 9.50374 10.95968 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.005882 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.305816 B = 4759.345704 C = 6642.285909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.218 3.782 4 H 0.028 0.972 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.072 3.928 8 N -0.882 5.882 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.109 3.891 15 H 0.084 0.916 16 C -0.082 4.082 17 C -0.044 4.044 18 C -0.111 4.111 19 C -0.063 4.063 20 C -0.039 4.039 21 C 0.261 3.739 22 N -0.430 5.430 23 C -0.067 4.067 24 C -0.111 4.111 25 C 0.465 3.535 26 O -0.482 6.482 27 O -0.367 6.367 28 C 0.037 3.963 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.343 0.657 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 10.679 8.049 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.304 5.304 14 C -0.003 4.003 15 H 0.102 0.898 16 C -0.119 4.119 17 C -0.045 4.045 18 C -0.129 4.129 19 C -0.083 4.083 20 C -0.043 4.043 21 C -0.054 4.054 22 N -0.105 5.105 23 C -0.087 4.087 24 C -0.129 4.129 25 C 0.305 3.695 26 O -0.366 6.366 27 O -0.284 6.284 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.165 0.835 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.266 9.970 8.456 13.751 hybrid contribution 1.471 0.100 -0.678 1.623 sum -2.794 10.070 7.778 13.027 Atomic orbital electron populations 1.21686 0.98540 0.98032 1.01035 1.21472 0.92397 0.98715 1.01665 1.19210 0.92719 0.91449 0.85608 0.95368 1.21795 0.92183 1.38275 1.06342 0.92469 1.24886 0.97826 0.94868 0.95557 1.69878 1.34990 1.37486 1.09647 0.86726 0.86227 0.78603 0.77282 1.20634 1.21223 1.19841 1.60622 1.56410 1.02649 1.10748 1.20825 0.91196 0.93142 0.95162 0.89828 1.20762 0.94043 1.01399 0.95735 1.19983 0.95353 0.94191 0.94968 1.21077 0.97081 0.97297 0.97472 1.21137 0.91696 0.97413 0.98068 1.16000 0.86685 0.98957 1.02613 1.25791 0.92887 0.93430 0.93244 1.81215 1.11399 1.08184 1.09692 1.21101 0.97418 0.95533 0.94688 1.20981 0.91946 1.00148 0.99804 1.23992 0.91724 0.77889 0.75912 1.90605 1.40885 1.48278 1.56848 1.86516 1.35586 1.43890 1.62456 1.23137 0.82514 1.01832 0.98211 0.92418 0.94897 0.96009 0.89239 0.95036 0.92810 0.83489 0.89193 0.89576 0.84259 0.84979 0.85206 0.84791 0.88717 0.92106 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.80 37.16 0.36 -2.53 16 2 C -0.10 -2.44 5.44 -26.73 -0.15 -2.59 16 3 C 0.22 5.08 1.80 -68.87 -0.12 4.95 16 4 H 0.03 0.75 7.54 -51.92 -0.39 0.36 16 5 C -0.55 -13.70 8.30 -34.44 -0.29 -13.99 16 6 H 0.06 1.40 7.73 -52.49 -0.41 0.99 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 8 N -0.88 -24.24 11.30 55.43 0.63 -23.61 16 9 Si 0.88 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.67 -12.68 5.05 -102.16 -0.52 -13.20 16 14 C 0.11 1.80 2.37 -68.86 -0.16 1.64 16 15 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 16 C -0.08 -0.98 4.97 -27.88 -0.14 -1.12 16 17 C -0.04 -0.52 4.83 -104.53 -0.50 -1.02 16 18 C -0.11 -1.28 8.00 -39.64 -0.32 -1.59 16 19 C -0.06 -0.71 9.76 -39.16 -0.38 -1.09 16 20 C -0.04 -0.47 5.73 -106.93 -0.61 -1.09 16 21 C 0.26 3.57 15.33 -22.48 -0.34 3.23 16 22 N -0.43 -6.72 18.54 41.83 0.78 -5.94 16 23 C -0.07 -0.74 9.76 -39.17 -0.38 -1.13 16 24 C -0.11 -1.22 9.68 -39.64 -0.38 -1.60 16 25 C 0.46 8.08 6.70 36.00 0.24 8.32 16 26 O -0.48 -9.48 16.26 -18.75 -0.30 -9.78 16 27 O -0.37 -5.66 10.56 -39.24 -0.41 -6.07 16 28 C 0.04 0.44 10.56 101.05 1.07 1.51 16 29 H 0.06 1.22 7.56 -51.93 -0.39 0.83 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 2.36 5.99 -51.93 -0.31 2.05 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.34 6.09 5.24 -39.30 -0.21 5.88 16 36 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.14 1.45 7.59 -52.49 -0.40 1.05 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 44 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -30.48 377.70 -7.65 -38.14 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.28 Total: 5.49 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.21 Total: -6.31 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.89 Total: -42.75 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.72 Total: -15.86 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.48 -7.65 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.073 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds