Wall clock time and date at job start Tue Mar 31 2020 10:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47490 * 2 1 4 4 H 1.09011 * 109.46680 * 303.40853 * 3 2 1 5 5 C 1.50702 * 109.47217 * 183.41138 * 3 2 1 6 6 H 1.07999 * 119.99647 * 239.99549 * 5 3 2 7 7 C 1.37871 * 119.99858 * 59.99467 * 5 3 2 8 8 N 1.31513 * 120.00651 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99819 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47223 * 90.00121 * 9 7 5 11 11 H 1.48498 * 109.47174 * 210.00172 * 9 7 5 12 12 H 1.48504 * 109.46924 * 330.00018 * 9 7 5 13 13 N 1.46898 * 109.47218 * 63.40652 * 3 2 1 14 14 C 1.46906 * 110.99749 * 205.97913 * 13 3 2 15 15 H 1.09001 * 109.47296 * 322.74226 * 14 13 3 16 16 C 1.53006 * 109.46903 * 202.74546 * 14 13 3 17 17 C 1.50693 * 109.47282 * 64.99474 * 16 14 13 18 18 C 1.38356 * 119.85160 * 269.72765 * 17 16 14 19 19 C 1.37955 * 120.15467 * 179.76589 * 18 17 16 20 20 C 1.39634 * 119.84177 * 0.53146 * 19 18 17 21 21 C 1.43202 * 120.15194 * 179.70340 * 20 19 18 22 22 N 8.68484 * 137.19933 * 57.23821 * 2 1 3 23 23 C 1.39635 * 119.69898 * 359.72233 * 20 19 18 24 24 C 1.37942 * 119.84942 * 359.97438 * 23 20 19 25 25 C 1.50698 * 109.47225 * 82.74560 * 14 13 3 26 26 O 1.20826 * 120.00135 * 26.46772 * 25 14 13 27 27 O 1.34224 * 119.99863 * 206.47582 * 25 14 13 28 28 C 1.45202 * 117.00114 * 179.97438 * 27 25 14 29 29 H 1.08998 * 109.46616 * 300.73693 * 1 2 3 30 30 H 1.08997 * 109.46404 * 60.72909 * 1 2 3 31 31 H 1.08997 * 109.47324 * 180.73223 * 1 2 3 32 32 H 1.08997 * 109.46861 * 239.99127 * 2 1 3 33 33 H 1.09001 * 109.46883 * 119.99795 * 2 1 3 34 34 H 0.96995 * 120.00394 * 179.97438 * 8 7 5 35 35 H 1.00892 * 111.00089 * 82.02841 * 13 3 2 36 36 H 1.09007 * 109.46255 * 304.99772 * 16 14 13 37 37 H 1.08994 * 109.46653 * 185.00311 * 16 14 13 38 38 H 1.07997 * 119.92416 * 359.97438 * 18 17 16 39 39 H 1.07995 * 120.08268 * 180.25494 * 19 18 17 40 40 H 1.08000 * 120.07453 * 179.97438 * 23 20 19 41 41 H 1.07995 * 119.92842 * 179.97438 * 24 23 20 42 42 H 1.09001 * 109.47361 * 179.97438 * 28 27 25 43 43 H 1.08995 * 109.46956 * 299.99716 * 28 27 25 44 44 H 1.08997 * 109.47029 * 59.99965 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6277 1.9736 -0.8580 5 6 3.5448 1.4432 -0.0845 6 1 4.1296 1.8950 0.7030 7 6 4.1747 0.8671 -1.1672 8 7 3.4626 0.3173 -2.1265 9 14 6.0398 0.8674 -1.2717 10 1 6.5720 -0.3588 -0.6248 11 1 6.4558 0.8955 -2.6969 12 1 6.5742 2.0658 -0.5763 13 7 1.6189 2.1108 1.2384 14 6 1.5225 3.5640 1.0458 15 1 2.3247 3.8973 0.3875 16 6 1.6477 4.2672 2.3989 17 6 3.0250 4.0302 2.9626 18 6 3.2572 2.9353 3.7759 19 6 4.5168 2.7097 4.2914 20 6 5.5559 3.5956 3.9997 21 6 6.8644 3.3713 4.5364 22 7 7.9023 3.1933 4.9622 23 6 5.3132 4.7015 3.1825 24 6 4.0504 4.9116 2.6686 25 6 0.1910 3.9012 0.4257 26 8 -0.7570 3.1717 0.5962 27 8 0.0583 5.0120 -0.3161 28 6 -1.2528 5.2734 -0.8828 29 1 -0.3632 0.5252 0.8833 30 1 -0.3632 0.5025 -0.8965 31 1 -0.3634 -1.0275 0.0131 32 1 1.8934 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.9057 -0.0877 -2.8883 35 1 2.2422 1.8876 1.9998 36 1 0.9006 3.8692 3.0856 37 1 1.4877 5.3374 2.2682 38 1 2.4514 2.2538 4.0049 39 1 4.6977 1.8524 4.9227 40 1 6.1124 5.3909 2.9533 41 1 3.8612 5.7668 2.0368 42 1 -1.2223 6.1992 -1.4573 43 1 -1.5370 4.4490 -1.5366 44 1 -1.9834 5.3687 -0.0796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:53 Heat of formation + Delta-G solvation = -53.967251 kcal Electronic energy + Delta-G solvation = -26868.995377 eV Core-core repulsion = 23171.621029 eV Total energy + Delta-G solvation = -3697.374348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48219 -40.46866 -38.40100 -37.51009 -37.05316 -35.43497 -33.66569 -32.34637 -31.96080 -30.23429 -28.58380 -27.79505 -25.74172 -24.54742 -23.64266 -22.98147 -21.38822 -21.17048 -19.84987 -18.85975 -18.35369 -17.59043 -17.13268 -16.80722 -16.47042 -16.29562 -15.87258 -15.50479 -15.38821 -15.02487 -14.80689 -14.53603 -14.35014 -14.28930 -14.06352 -13.89653 -13.79032 -13.38407 -13.17749 -13.15199 -13.00050 -12.88847 -12.57620 -12.53866 -12.42094 -12.35232 -12.08951 -11.84995 -11.63933 -11.51578 -11.37964 -11.24188 -10.92563 -10.43864 -9.87223 -9.66576 -9.10020 -8.02781 -6.22847 -0.19184 0.50022 1.36494 1.39242 1.43163 1.49191 1.59257 1.81055 2.01257 2.41962 2.87161 2.96593 3.19637 3.58306 3.78167 3.96924 4.05372 4.12192 4.20735 4.39205 4.40139 4.43692 4.48605 4.55681 4.62692 4.75402 4.78584 4.80632 4.87747 4.98315 5.08393 5.15876 5.17631 5.31731 5.40857 5.44415 5.50072 5.58046 5.63452 5.67790 5.81106 5.94691 6.11695 6.16958 6.32742 6.42300 6.79191 6.98582 7.05684 7.48957 8.95234 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.005882 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.305816 B = 4759.345704 C = 6642.285909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.229 3.771 4 H -0.010 1.010 5 C -0.545 4.545 6 H 0.063 0.937 7 C 0.026 3.974 8 N -0.912 5.912 9 Si 0.937 3.063 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.665 5.665 14 C 0.108 3.892 15 H 0.068 0.932 16 C -0.070 4.070 17 C -0.052 4.052 18 C -0.118 4.118 19 C -0.064 4.064 20 C -0.052 4.052 21 C 0.281 3.719 22 N -0.470 5.470 23 C -0.067 4.067 24 C -0.113 4.113 25 C 0.464 3.536 26 O -0.511 6.511 27 O -0.370 6.370 28 C 0.030 3.970 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.351 0.649 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.046 0.954 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 12.083 8.987 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.121 3.879 4 H 0.008 0.992 5 C -0.584 4.584 6 H 0.081 0.919 7 C -0.174 4.174 8 N -0.552 5.552 9 Si 0.764 3.236 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.300 5.300 14 C -0.004 4.004 15 H 0.086 0.914 16 C -0.108 4.108 17 C -0.053 4.053 18 C -0.136 4.136 19 C -0.085 4.085 20 C -0.056 4.056 21 C -0.033 4.033 22 N -0.146 5.146 23 C -0.088 4.088 24 C -0.131 4.131 25 C 0.306 3.694 26 O -0.398 6.398 27 O -0.287 6.287 28 C -0.063 4.063 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.174 0.826 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.172 0.828 42 H 0.149 0.851 43 H 0.065 0.935 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.413 11.403 9.409 15.429 hybrid contribution 1.433 -0.272 -1.004 1.771 sum -2.980 11.131 8.405 14.263 Atomic orbital electron populations 1.21509 0.96867 0.99025 1.00281 1.21360 0.93811 0.98631 1.00229 1.18877 0.91649 0.91249 0.86159 0.99182 1.22103 0.93223 1.37103 1.05982 0.91861 1.25543 1.01221 0.95037 0.95617 1.70012 1.36289 1.38658 1.10209 0.85882 0.82186 0.78613 0.76944 1.20794 1.21551 1.18932 1.60449 1.56200 1.04434 1.08966 1.20897 0.90311 0.91742 0.97493 0.91398 1.20727 0.94560 1.02450 0.93049 1.20072 0.95389 0.94590 0.95217 1.21244 0.97381 0.97487 0.97527 1.21324 0.91457 0.97684 0.98010 1.16141 0.86078 0.99893 1.03454 1.26008 0.92820 0.92267 0.92233 1.81231 1.12616 1.09590 1.11189 1.21347 0.98093 0.95356 0.93982 1.21247 0.91555 1.00609 0.99662 1.24138 0.91615 0.77993 0.75648 1.90588 1.41832 1.49273 1.58069 1.86496 1.37472 1.42833 1.61896 1.23465 0.81272 1.02950 0.98652 0.92077 0.96520 0.94147 0.92259 0.94728 0.93107 0.82569 0.88373 0.86958 0.83356 0.83625 0.83488 0.82752 0.85069 0.93498 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.80 71.98 0.71 -4.37 16 2 C -0.10 -4.81 5.44 30.60 0.17 -4.64 16 3 C 0.23 10.75 1.80 44.17 0.08 10.83 16 4 H -0.01 -0.53 7.54 -2.38 -0.02 -0.55 16 5 C -0.54 -27.12 8.30 25.60 0.21 -26.91 16 6 H 0.06 3.02 7.73 -2.91 -0.02 2.99 16 7 C 0.03 1.36 5.30 84.65 0.45 1.81 16 8 N -0.91 -50.99 11.30 21.45 0.24 -50.75 16 9 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.67 -24.65 5.05 -477.13 -2.41 -27.07 16 14 C 0.11 3.42 2.37 44.17 0.10 3.52 16 15 H 0.07 2.40 7.70 -2.39 -0.02 2.38 16 16 C -0.07 -1.51 4.97 29.85 0.15 -1.36 16 17 C -0.05 -1.08 4.83 -19.81 -0.10 -1.18 16 18 C -0.12 -2.45 8.00 22.23 0.18 -2.28 16 19 C -0.06 -1.33 9.76 22.54 0.22 -1.11 16 20 C -0.05 -1.17 5.73 -21.36 -0.12 -1.29 16 21 C 0.28 7.33 15.33 88.33 1.35 8.69 16 22 N -0.47 -14.38 18.54 19.00 0.35 -14.03 16 23 C -0.07 -1.33 9.76 22.54 0.22 -1.11 16 24 C -0.11 -2.17 9.68 22.23 0.22 -1.95 16 25 C 0.46 15.75 6.70 71.24 0.48 16.22 16 26 O -0.51 -19.84 16.26 21.97 0.36 -19.48 16 27 O -0.37 -10.90 10.56 -51.36 -0.54 -11.45 16 28 C 0.03 0.66 10.56 113.37 1.20 1.86 16 29 H 0.06 2.54 7.56 -2.39 -0.02 2.52 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 3.19 5.99 -2.39 -0.01 3.17 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.35 11.95 5.24 -89.70 -0.47 11.48 16 36 H 0.10 1.99 8.08 -2.38 -0.02 1.97 16 37 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 38 H 0.15 2.75 7.59 -2.91 -0.02 2.73 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 44 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -66.03 377.70 6.07 -59.96 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.54 Total: 21.95 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.51 Total: -3.26 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -1.82 Total: -91.84 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.19 Total: -30.93 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -66.03 6.07 -59.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.992 kcal (2) G-P(sol) polarization free energy of solvation -66.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds