Wall clock time and date at job start Tue Mar 31 2020 10:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46896 * 2 1 4 4 H 1.09000 * 109.47161 * 54.68448 * 3 2 1 5 5 C 1.50697 * 109.47195 * 174.68742 * 3 2 1 6 6 H 1.07994 * 120.00318 * 116.42352 * 5 3 2 7 7 C 1.37885 * 119.99711 * 296.41846 * 5 3 2 8 8 N 1.31510 * 119.99793 * 352.52361 * 7 5 3 9 9 Si 1.86802 * 119.99852 * 172.78888 * 7 5 3 10 10 H 1.48500 * 109.47147 * 179.72744 * 9 7 5 11 11 H 1.48497 * 109.47474 * 299.73227 * 9 7 5 12 12 H 1.48505 * 109.46725 * 59.73001 * 9 7 5 13 13 N 1.46906 * 109.47170 * 294.68600 * 3 2 1 14 14 C 1.46897 * 110.99825 * 155.54327 * 13 3 2 15 15 C 1.53142 * 109.43806 * 274.87697 * 14 13 3 16 16 C 1.53705 * 108.88254 * 186.04469 * 15 14 13 17 17 H 1.09000 * 112.58570 * 187.92427 * 16 15 14 18 18 C 1.54604 * 107.82988 * 312.22822 * 16 15 14 19 19 C 1.54312 * 104.75299 * 88.66384 * 18 16 15 20 20 C 1.54616 * 104.74949 * 359.97438 * 19 18 16 21 21 H 1.08999 * 112.19085 * 147.41234 * 20 19 18 22 22 C 1.53157 * 109.43377 * 154.65343 * 14 13 3 23 23 N 1.48290 * 104.25890 * 25.13768 * 20 19 18 24 24 S 1.65603 * 128.20865 * 138.35808 * 23 20 19 25 25 C 1.81396 * 104.44771 * 90.00204 * 24 23 20 26 26 O 1.42099 * 104.27749 * 206.07136 * 24 23 20 27 27 O 1.42096 * 104.27711 * 333.93139 * 24 23 20 28 28 H 1.08997 * 109.47000 * 66.22789 * 1 2 3 29 29 H 1.09002 * 109.47238 * 186.22338 * 1 2 3 30 30 H 1.09000 * 109.47220 * 306.22346 * 1 2 3 31 31 H 1.08998 * 109.47124 * 240.00530 * 2 1 3 32 32 H 1.08992 * 109.46848 * 119.99977 * 2 1 3 33 33 H 0.96999 * 120.00518 * 355.94231 * 8 7 5 34 34 H 1.00897 * 111.00187 * 31.58890 * 13 3 2 35 35 H 1.09000 * 109.43794 * 34.74913 * 14 13 3 36 36 H 1.09004 * 109.56743 * 305.86101 * 15 14 13 37 37 H 1.08999 * 109.57024 * 66.22506 * 15 14 13 38 38 H 1.09002 * 110.38449 * 329.84642 * 18 16 15 39 39 H 1.08999 * 110.47590 * 207.52939 * 18 16 15 40 40 H 1.08997 * 110.38413 * 241.18461 * 19 18 16 41 41 H 1.09002 * 110.47785 * 118.86713 * 19 18 16 42 42 H 1.09004 * 109.56780 * 293.77789 * 22 14 13 43 43 H 1.09007 * 109.56608 * 54.02083 * 22 14 13 44 44 H 1.09003 * 109.47229 * 60.00028 * 25 24 23 45 45 H 1.08997 * 109.47438 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47407 * 300.00251 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9830 0.8386 5 6 3.5412 1.4446 0.1315 6 1 4.1528 1.8355 -0.6681 7 6 4.1339 0.9475 1.2730 8 7 3.3922 0.6083 2.3046 9 14 5.9909 0.7629 1.3566 10 1 6.3748 0.2172 2.6832 11 1 6.4446 -0.1649 0.2895 12 1 6.6293 2.0897 1.1634 13 7 1.6578 2.0970 -1.2585 14 6 1.5906 3.5552 -1.0942 15 6 0.2119 3.9440 -0.5526 16 6 0.1010 5.4769 -0.5289 17 1 -0.8019 5.8236 -0.0262 18 6 1.3853 6.0343 0.1269 19 6 2.3779 6.2116 -1.0412 20 6 1.6002 5.7440 -2.2930 21 1 1.8904 6.2950 -3.1876 22 6 1.8227 4.2318 -2.4484 23 7 0.1755 5.9445 -1.9340 24 16 -1.0435 6.5488 -2.8781 25 6 -1.7465 5.0910 -3.6972 26 8 -1.9698 7.0934 -1.9482 27 8 -0.3783 7.3782 -3.8208 28 1 -0.3633 0.4142 -0.9404 29 1 -0.3634 -1.0216 0.1114 30 1 -0.3633 0.6073 0.8290 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.4347 0.7624 2.2853 34 1 0.7836 1.7315 -1.6052 35 1 2.3594 3.8769 -0.3916 36 1 -0.5635 3.5319 -1.1984 37 1 0.0933 3.5538 0.4582 38 1 1.7786 5.3247 0.8549 39 1 1.1845 6.9939 0.6034 40 1 3.2595 5.5893 -0.8880 41 1 2.6657 7.2582 -1.1415 42 1 2.8443 4.0451 -2.7795 43 1 1.1223 3.8312 -3.1814 44 1 -2.1206 4.3965 -2.9449 45 1 -2.5662 5.3989 -4.3464 46 1 -0.9756 4.6014 -4.2922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:43 Heat of formation + Delta-G solvation = -70.601457 kcal Electronic energy + Delta-G solvation = -26770.825400 eV Core-core repulsion = 23208.173690 eV Total energy + Delta-G solvation = -3562.651710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44276 -37.22011 -36.55577 -36.05769 -33.22919 -31.57866 -31.24775 -30.91651 -29.60653 -28.84406 -25.75979 -24.05037 -23.25608 -22.39702 -20.55989 -20.11853 -19.91083 -18.51496 -17.70247 -16.78972 -16.42865 -15.92847 -15.74463 -14.89313 -14.23956 -13.92092 -13.80947 -13.78970 -13.70416 -13.45179 -13.30121 -13.02587 -12.71671 -12.63422 -12.44322 -12.23194 -12.16467 -12.09833 -11.84561 -11.56359 -11.37574 -11.24076 -11.12018 -11.05953 -10.76760 -10.58088 -10.45210 -10.26251 -10.22883 -10.08875 -9.97296 -9.78890 -8.97536 -8.68490 -8.36857 -7.31790 -6.31207 -4.02938 0.10878 2.50525 3.43717 3.45959 3.64163 3.74041 3.91988 4.43944 4.52425 4.60103 4.63223 4.83498 4.91194 5.07637 5.18850 5.32213 5.34459 5.38137 5.42961 5.49910 5.53532 5.67550 5.75667 5.86045 5.88976 5.91235 6.05695 6.07694 6.09869 6.13277 6.15280 6.24548 6.42324 6.49418 6.56968 6.61087 6.66871 6.78911 6.88471 7.15350 7.36753 8.01173 8.11970 8.44383 8.66202 8.92112 9.66263 11.02922 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.004191 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.798310 B = 6679.808031 C = 7307.361241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.210 3.790 4 H -0.007 1.007 5 C -0.575 4.575 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.675 5.675 14 C 0.095 3.905 15 C -0.161 4.161 16 C 0.155 3.845 17 H 0.099 0.901 18 C -0.127 4.127 19 C -0.126 4.126 20 C 0.150 3.850 21 H 0.102 0.898 22 C -0.118 4.118 23 N -1.010 6.010 24 S 2.631 3.369 25 C -0.675 4.675 26 O -0.959 6.959 27 O -0.958 6.958 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.269 0.731 34 H 0.314 0.686 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 8.737 -8.865 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.102 3.898 4 H 0.011 0.989 5 C -0.614 4.614 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.305 5.305 14 C -0.015 4.015 15 C -0.202 4.202 16 C 0.049 3.951 17 H 0.117 0.883 18 C -0.166 4.166 19 C -0.166 4.166 20 C 0.044 3.956 21 H 0.120 0.880 22 C -0.158 4.158 23 N -0.848 5.848 24 S 2.726 3.274 25 C -0.824 4.824 26 O -0.949 6.949 27 O -0.948 6.948 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.824 9.123 -8.310 14.102 hybrid contribution -2.285 -0.307 -0.665 2.400 sum -9.109 8.816 -8.976 15.533 Atomic orbital electron populations 1.21887 0.99005 1.00112 0.99909 1.21836 0.91877 1.00813 1.02299 1.19265 0.96227 0.89149 0.85156 0.98919 1.21945 0.90814 1.44310 1.04331 0.92730 1.25710 1.06544 0.94028 0.92290 1.70808 1.07984 1.45452 1.30984 0.83620 0.74817 0.76439 0.75881 1.21049 1.21557 1.21604 1.60706 1.34958 1.02157 1.32639 1.21585 0.94895 0.89252 0.95808 1.22945 1.00076 0.94968 1.02177 1.21930 0.99380 0.93650 0.80154 0.88258 1.22577 0.94643 1.01419 0.97960 1.22582 0.98581 1.01557 0.93833 1.22033 0.78729 0.96309 0.98551 0.87972 1.22126 1.02564 0.92828 0.98235 1.59345 1.21009 1.80847 1.23557 1.04149 0.73352 0.75901 0.74044 1.30645 1.13678 1.23257 1.14828 1.93589 1.63986 1.75990 1.61361 1.93588 1.73401 1.63651 1.64191 0.94112 0.94060 0.93813 0.92991 0.90862 0.92028 0.86845 0.88826 0.92483 0.90886 0.89714 0.91448 0.89526 0.91475 0.90183 0.92478 0.85443 0.85810 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.62 37.16 0.36 -2.27 16 2 C -0.13 -2.80 5.21 -26.73 -0.14 -2.94 16 3 C 0.21 4.73 1.48 -68.86 -0.10 4.63 16 4 H -0.01 -0.16 6.59 -51.93 -0.34 -0.50 16 5 C -0.58 -15.00 8.42 -34.44 -0.29 -15.29 16 6 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 7 C 0.02 0.48 5.18 -17.82 -0.09 0.39 16 8 N -0.92 -25.97 12.79 55.43 0.71 -25.26 16 9 Si 1.06 24.31 29.91 -169.99 -5.08 19.23 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 13 N -0.68 -12.66 6.04 -100.79 -0.61 -13.27 16 14 C 0.10 1.51 1.92 -67.56 -0.13 1.38 16 15 C -0.16 -2.20 4.87 -26.29 -0.13 -2.33 16 16 C 0.16 1.92 4.21 -65.75 -0.28 1.64 16 17 H 0.10 1.17 7.76 -51.93 -0.40 0.76 16 18 C -0.13 -1.58 5.98 -25.20 -0.15 -1.73 16 19 C -0.13 -1.53 5.99 -25.19 -0.15 -1.68 16 20 C 0.15 1.79 4.19 -65.77 -0.28 1.51 16 21 H 0.10 1.13 7.80 -51.93 -0.40 0.72 16 22 C -0.12 -1.57 5.23 -26.32 -0.14 -1.71 16 23 N -1.01 -11.85 3.07 -95.33 -0.29 -12.15 16 24 S 2.63 29.55 6.39 -107.50 -0.69 28.86 16 25 C -0.67 -5.32 10.99 101.05 1.11 -4.21 16 26 O -0.96 -13.58 17.47 -57.54 -1.01 -14.58 16 27 O -0.96 -13.39 17.49 -57.54 -1.01 -14.40 16 28 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.79 6.17 -51.93 -0.32 1.47 16 33 H 0.27 7.56 6.17 -40.82 -0.25 7.30 16 34 H 0.31 5.38 6.26 -39.29 -0.25 5.13 16 35 H 0.09 1.72 4.99 -51.93 -0.26 1.47 16 36 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 37 H 0.07 1.10 7.53 -51.93 -0.39 0.71 16 38 H 0.08 1.16 7.04 -51.93 -0.37 0.80 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.12 7.04 -51.93 -0.37 0.75 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.13 0.93 8.14 -51.92 -0.42 0.50 16 45 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -31.90 359.04 -10.52 -42.42 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.55 Total: 6.34 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -0.40 Total: -22.60 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.19 Total: -50.68 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -2.01 Total: -28.98 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Atomic # 16 Polarization: 29.55 SS G_CDS: -0.69 Total: 28.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.90 -10.52 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.186 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds