Wall clock time and date at job start Tue Mar 31 2020 10:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46896 * 2 1 4 4 H 1.09000 * 109.47161 * 54.68448 * 3 2 1 5 5 C 1.50697 * 109.47195 * 174.68742 * 3 2 1 6 6 H 1.07994 * 120.00318 * 116.42352 * 5 3 2 7 7 C 1.37885 * 119.99711 * 296.41846 * 5 3 2 8 8 N 1.31510 * 119.99793 * 352.52361 * 7 5 3 9 9 Si 1.86802 * 119.99852 * 172.78888 * 7 5 3 10 10 H 1.48500 * 109.47147 * 179.72744 * 9 7 5 11 11 H 1.48497 * 109.47474 * 299.73227 * 9 7 5 12 12 H 1.48505 * 109.46725 * 59.73001 * 9 7 5 13 13 N 1.46906 * 109.47170 * 294.68600 * 3 2 1 14 14 C 1.46897 * 110.99825 * 155.54327 * 13 3 2 15 15 C 1.53142 * 109.43806 * 274.87697 * 14 13 3 16 16 C 1.53705 * 108.88254 * 186.04469 * 15 14 13 17 17 H 1.09000 * 112.58570 * 187.92427 * 16 15 14 18 18 C 1.54604 * 107.82988 * 312.22822 * 16 15 14 19 19 C 1.54312 * 104.75299 * 88.66384 * 18 16 15 20 20 C 1.54616 * 104.74949 * 359.97438 * 19 18 16 21 21 H 1.08999 * 112.19085 * 147.41234 * 20 19 18 22 22 C 1.53157 * 109.43377 * 154.65343 * 14 13 3 23 23 N 1.48290 * 104.25890 * 25.13768 * 20 19 18 24 24 S 1.65603 * 128.20865 * 138.35808 * 23 20 19 25 25 C 1.81396 * 104.44771 * 90.00204 * 24 23 20 26 26 O 1.42099 * 104.27749 * 206.07136 * 24 23 20 27 27 O 1.42096 * 104.27711 * 333.93139 * 24 23 20 28 28 H 1.08997 * 109.47000 * 66.22789 * 1 2 3 29 29 H 1.09002 * 109.47238 * 186.22338 * 1 2 3 30 30 H 1.09000 * 109.47220 * 306.22346 * 1 2 3 31 31 H 1.08998 * 109.47124 * 240.00530 * 2 1 3 32 32 H 1.08992 * 109.46848 * 119.99977 * 2 1 3 33 33 H 0.96999 * 120.00518 * 355.94231 * 8 7 5 34 34 H 1.00897 * 111.00187 * 31.58890 * 13 3 2 35 35 H 1.09000 * 109.43794 * 34.74913 * 14 13 3 36 36 H 1.09004 * 109.56743 * 305.86101 * 15 14 13 37 37 H 1.08999 * 109.57024 * 66.22506 * 15 14 13 38 38 H 1.09002 * 110.38449 * 329.84642 * 18 16 15 39 39 H 1.08999 * 110.47590 * 207.52939 * 18 16 15 40 40 H 1.08997 * 110.38413 * 241.18461 * 19 18 16 41 41 H 1.09002 * 110.47785 * 118.86713 * 19 18 16 42 42 H 1.09004 * 109.56780 * 293.77789 * 22 14 13 43 43 H 1.09007 * 109.56608 * 54.02083 * 22 14 13 44 44 H 1.09003 * 109.47229 * 60.00028 * 25 24 23 45 45 H 1.08997 * 109.47438 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47407 * 300.00251 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9830 0.8386 5 6 3.5412 1.4446 0.1315 6 1 4.1528 1.8355 -0.6681 7 6 4.1339 0.9475 1.2730 8 7 3.3922 0.6083 2.3046 9 14 5.9909 0.7629 1.3566 10 1 6.3748 0.2172 2.6832 11 1 6.4446 -0.1649 0.2895 12 1 6.6293 2.0897 1.1634 13 7 1.6578 2.0970 -1.2585 14 6 1.5906 3.5552 -1.0942 15 6 0.2119 3.9440 -0.5526 16 6 0.1010 5.4769 -0.5289 17 1 -0.8019 5.8236 -0.0262 18 6 1.3853 6.0343 0.1269 19 6 2.3779 6.2116 -1.0412 20 6 1.6002 5.7440 -2.2930 21 1 1.8904 6.2950 -3.1876 22 6 1.8227 4.2318 -2.4484 23 7 0.1755 5.9445 -1.9340 24 16 -1.0435 6.5488 -2.8781 25 6 -1.7465 5.0910 -3.6972 26 8 -1.9698 7.0934 -1.9482 27 8 -0.3783 7.3782 -3.8208 28 1 -0.3633 0.4142 -0.9404 29 1 -0.3634 -1.0216 0.1114 30 1 -0.3633 0.6073 0.8290 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.4347 0.7624 2.2853 34 1 0.7836 1.7315 -1.6052 35 1 2.3594 3.8769 -0.3916 36 1 -0.5635 3.5319 -1.1984 37 1 0.0933 3.5538 0.4582 38 1 1.7786 5.3247 0.8549 39 1 1.1845 6.9939 0.6034 40 1 3.2595 5.5893 -0.8880 41 1 2.6657 7.2582 -1.1415 42 1 2.8443 4.0451 -2.7795 43 1 1.1223 3.8312 -3.1814 44 1 -2.1206 4.3965 -2.9449 45 1 -2.5662 5.3989 -4.3464 46 1 -0.9756 4.6014 -4.2922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:42 Heat of formation + Delta-G solvation = -93.536491 kcal Electronic energy + Delta-G solvation = -26771.819938 eV Core-core repulsion = 23208.173690 eV Total energy + Delta-G solvation = -3563.646248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.53241 -38.19476 -38.17303 -37.03105 -34.85961 -33.28068 -32.30159 -31.90128 -30.39998 -30.11780 -27.55650 -25.16062 -24.91493 -23.66561 -21.76783 -21.49212 -21.17292 -19.48294 -18.74978 -18.69986 -17.40121 -16.98681 -16.84351 -16.33685 -15.69791 -15.56410 -15.08365 -14.82833 -14.80430 -14.48075 -14.20625 -14.08964 -13.97306 -13.82000 -13.68485 -13.54503 -13.23348 -13.19940 -13.09447 -12.98253 -12.65178 -12.56561 -12.39562 -12.35681 -12.15091 -11.96809 -11.92935 -11.80929 -11.70505 -11.50781 -11.25057 -11.08057 -10.58088 -10.40156 -9.98605 -8.94569 -8.42686 -6.16738 -0.73514 1.56466 1.61352 1.62437 1.81551 2.62344 2.92520 3.03979 3.26905 3.45242 3.53414 3.79730 3.99119 4.02726 4.07852 4.18677 4.23526 4.27306 4.36132 4.41044 4.41539 4.44688 4.54295 4.54817 4.71003 4.74221 4.89018 4.90996 5.00384 5.02965 5.08244 5.10477 5.12164 5.19768 5.23836 5.34280 5.36725 5.45874 5.52359 5.56379 5.64433 6.13382 6.27524 6.63890 6.71174 7.07799 7.59339 8.89256 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.004191 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.798310 B = 6679.808031 C = 7307.361241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.218 3.782 4 H -0.032 1.032 5 C -0.581 4.581 6 H 0.041 0.959 7 C -0.029 4.029 8 N -0.940 5.940 9 Si 1.104 2.896 10 H -0.289 1.289 11 H -0.277 1.277 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.095 3.905 15 C -0.153 4.153 16 C 0.160 3.840 17 H 0.109 0.891 18 C -0.129 4.129 19 C -0.128 4.128 20 C 0.156 3.844 21 H 0.118 0.882 22 C -0.110 4.110 23 N -1.010 6.010 24 S 2.636 3.364 25 C -0.655 4.655 26 O -0.992 6.992 27 O -0.989 6.989 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.327 0.673 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 8.835 -10.975 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.109 3.891 4 H -0.015 1.015 5 C -0.620 4.620 6 H 0.059 0.941 7 C -0.227 4.227 8 N -0.578 5.578 9 Si 0.928 3.072 10 H -0.215 1.215 11 H -0.203 1.203 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.015 4.015 15 C -0.193 4.193 16 C 0.054 3.946 17 H 0.127 0.873 18 C -0.169 4.169 19 C -0.167 4.167 20 C 0.049 3.951 21 H 0.135 0.865 22 C -0.150 4.150 23 N -0.846 5.846 24 S 2.735 3.265 25 C -0.808 4.808 26 O -0.983 6.983 27 O -0.979 6.979 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.160 0.840 45 H 0.166 0.834 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.096 9.269 -10.425 16.129 hybrid contribution -1.922 -0.337 -0.060 1.952 sum -10.018 8.932 -10.485 17.032 Atomic orbital electron populations 1.21756 0.95377 1.01435 1.01162 1.21666 0.95122 0.99318 1.00193 1.18995 0.94199 0.89907 0.86007 1.01471 1.22253 0.92910 1.43261 1.03545 0.94066 1.26866 1.09786 0.93821 0.92201 1.70905 1.07611 1.47389 1.31912 0.83083 0.71012 0.77255 0.75862 1.21521 1.20258 1.20078 1.60595 1.35952 1.03746 1.30475 1.21561 0.95379 0.87633 0.96904 1.22815 0.99102 0.96051 1.01370 1.21835 0.99466 0.92586 0.80753 0.87318 1.22570 0.95062 1.01372 0.97864 1.22585 0.98075 1.02044 0.94015 1.21985 0.78902 0.95357 0.98812 0.86466 1.22044 1.02563 0.93606 0.96782 1.59270 1.21133 1.80863 1.23354 1.03868 0.72600 0.76677 0.73345 1.30447 1.14643 1.20515 1.15225 1.93547 1.64459 1.77666 1.62644 1.93548 1.74105 1.65780 1.64507 0.91557 0.92391 0.94108 0.93614 0.94344 0.93108 0.85418 0.92143 0.90203 0.92809 0.91859 0.90445 0.91013 0.90239 0.91208 0.90440 0.83994 0.83417 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.62 71.98 0.69 -3.93 16 2 C -0.12 -5.39 5.21 30.59 0.16 -5.23 16 3 C 0.22 9.99 1.48 44.17 0.07 10.06 16 4 H -0.03 -1.63 6.59 -2.39 -0.02 -1.64 16 5 C -0.58 -31.05 8.42 25.60 0.22 -30.83 16 6 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 7 C -0.03 -1.57 5.18 84.66 0.44 -1.13 16 8 N -0.94 -55.03 12.79 21.45 0.27 -54.76 16 9 Si 1.10 49.66 29.91 68.60 2.05 51.71 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 13 N -0.68 -24.94 6.04 -472.80 -2.86 -27.79 16 14 C 0.10 2.99 1.92 45.02 0.09 3.08 16 15 C -0.15 -4.00 4.87 30.88 0.15 -3.85 16 16 C 0.16 3.77 4.21 45.43 0.19 3.96 16 17 H 0.11 2.40 7.76 -2.39 -0.02 2.38 16 18 C -0.13 -3.25 5.98 31.59 0.19 -3.06 16 19 C -0.13 -3.07 5.99 31.59 0.19 -2.88 16 20 C 0.16 3.46 4.19 45.41 0.19 3.65 16 21 H 0.12 2.32 7.80 -2.39 -0.02 2.30 16 22 C -0.11 -2.76 5.23 30.86 0.16 -2.59 16 23 N -1.01 -21.60 3.07 -455.53 -1.40 -23.00 16 24 S 2.64 52.64 6.39 -56.49 -0.36 52.28 16 25 C -0.65 -7.28 10.99 113.37 1.25 -6.03 16 26 O -0.99 -26.37 17.47 -127.65 -2.23 -28.60 16 27 O -0.99 -25.66 17.49 -127.65 -2.23 -27.89 16 28 H 0.07 1.84 6.66 -2.39 -0.02 1.82 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.92 6.17 -2.39 -0.01 1.91 16 33 H 0.26 15.20 6.17 -92.71 -0.57 14.63 16 34 H 0.33 10.46 6.26 -89.70 -0.56 9.90 16 35 H 0.06 2.32 4.99 -2.39 -0.01 2.31 16 36 H 0.08 1.72 8.03 -2.38 -0.02 1.70 16 37 H 0.05 1.63 7.53 -2.39 -0.02 1.61 16 38 H 0.06 1.85 7.04 -2.39 -0.02 1.83 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.93 7.04 -2.39 -0.02 1.91 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -70.73 359.04 -2.17 -72.91 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.60 Total: 23.94 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 3.98 Total: -38.80 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.98 Total: -105.55 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -4.46 Total: -56.49 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: 52.64 SS G_CDS: -0.36 Total: 52.28 kcal Total: -70.73 -2.17 -72.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.630 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds