Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46911 * 2 1 4 4 H 1.08992 * 109.47048 * 303.67112 * 3 2 1 5 5 C 1.50701 * 109.46929 * 183.67492 * 3 2 1 6 6 H 1.08004 * 119.99381 * 244.81166 * 5 3 2 7 7 C 1.37876 * 120.00058 * 65.08808 * 5 3 2 8 8 N 1.31507 * 120.00031 * 4.56939 * 7 5 3 9 9 Si 1.86798 * 119.99901 * 184.56277 * 7 5 3 10 10 H 1.48510 * 109.46929 * 94.06224 * 9 7 5 11 11 H 1.48492 * 109.47504 * 214.06148 * 9 7 5 12 12 H 1.48502 * 109.47341 * 334.06667 * 9 7 5 13 13 N 1.46904 * 109.46963 * 63.67434 * 3 2 1 14 14 C 1.46840 * 111.00001 * 64.20181 * 13 3 2 15 15 C 1.53077 * 109.49569 * 186.10858 * 14 13 3 16 16 C 1.52945 * 109.25482 * 301.21480 * 15 14 13 17 17 C 1.52923 * 109.76745 * 57.08092 * 16 15 14 18 18 C 1.46840 * 110.99913 * 188.50056 * 13 3 2 19 19 O 1.45229 * 109.99707 * 295.86478 * 16 15 14 20 20 C 1.34360 * 108.88452 * 240.64573 * 19 16 15 21 21 O 1.21431 * 124.91014 * 179.97438 * 20 19 16 22 22 C 1.47945 * 110.17803 * 359.95144 * 20 19 16 23 23 N 1.32915 * 132.22439 * 180.02562 * 22 20 19 24 24 C 1.31441 * 121.68131 * 180.02562 * 23 22 20 25 25 C 1.38643 * 121.17455 * 359.89031 * 24 23 22 26 26 C 1.38759 * 119.15891 * 0.06264 * 25 24 23 27 27 C 1.38052 * 118.27319 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.47020 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47336 * 299.99570 * 1 2 3 30 30 H 1.08998 * 109.47606 * 59.99841 * 1 2 3 31 31 H 1.08997 * 109.47342 * 240.00312 * 2 1 3 32 32 H 1.09003 * 109.47336 * 119.99771 * 2 1 3 33 33 H 0.96998 * 119.99953 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46743 * 306.11561 * 14 13 3 35 35 H 1.09007 * 109.46813 * 66.10170 * 14 13 3 36 36 H 1.08997 * 109.51273 * 181.27602 * 15 14 13 37 37 H 1.09000 * 109.50631 * 61.14064 * 15 14 13 38 38 H 1.09001 * 109.50534 * 182.99318 * 17 16 15 39 39 H 1.09005 * 109.50349 * 62.87130 * 17 16 15 40 40 H 1.08998 * 109.47139 * 293.91941 * 18 13 3 41 41 H 1.09010 * 109.46212 * 53.90345 * 18 13 3 42 42 H 1.07993 * 119.41460 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.41927 * 180.09240 * 25 24 23 44 44 H 1.08001 * 120.85979 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6238 1.9750 -0.8552 5 6 3.5441 1.4435 -0.0911 6 1 4.1345 1.8238 0.7295 7 6 4.1665 0.9643 -1.2242 8 7 3.4484 0.5901 -2.2604 9 14 6.0297 0.8466 -1.2875 10 1 6.4535 -0.5181 -0.8832 11 1 6.4964 1.1204 -2.6703 12 1 6.6205 1.8438 -0.3591 13 7 1.6240 2.1089 1.2414 14 6 2.2474 1.4780 2.4117 15 6 1.6761 2.0962 3.6903 16 6 1.9438 3.6020 3.6857 17 6 1.3374 4.2312 2.4307 18 6 1.9188 3.5466 1.1912 19 8 3.3737 3.8524 3.7266 20 6 3.6613 4.5505 4.8380 21 8 4.7735 4.9157 5.1610 22 6 2.4270 4.8105 5.6111 23 7 2.2079 5.4491 6.7559 24 6 1.0013 5.5580 7.2657 25 6 -0.1002 5.0104 6.6261 26 6 0.0806 4.3352 5.4274 27 6 1.3603 4.2364 4.9191 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8863 0.2533 -3.0577 34 1 2.0396 0.4080 2.4013 35 1 3.3250 1.6391 2.3803 36 1 2.1550 1.6440 4.5587 37 1 0.6016 1.9177 3.7322 38 1 1.5761 5.2945 2.4050 39 1 0.2552 4.1008 2.4448 40 1 2.9982 3.6955 1.1666 41 1 1.4722 3.9778 0.2951 42 1 0.8652 6.0847 8.1986 43 1 -1.0864 5.1084 7.0552 44 1 -0.7581 3.8983 4.9057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = -47.403883 kcal Electronic energy + Delta-G solvation = -27484.272438 eV Core-core repulsion = 23787.182698 eV Total energy + Delta-G solvation = -3697.089739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.29072 -40.34608 -39.94753 -38.54913 -35.90292 -34.20863 -33.44405 -32.97825 -31.92876 -31.34795 -28.39146 -26.29006 -26.05182 -24.57368 -24.23890 -23.65839 -22.69149 -21.11314 -20.60021 -18.88797 -18.54032 -17.90190 -17.66990 -17.57433 -17.17318 -16.33922 -16.03173 -15.80791 -15.37272 -15.28094 -15.04450 -14.90605 -14.86542 -14.67258 -14.32083 -13.83545 -13.53711 -13.39497 -13.17035 -13.08318 -13.01607 -12.75136 -12.61446 -12.45303 -12.19851 -12.12337 -12.04450 -11.77036 -11.57739 -11.44219 -11.17124 -10.99630 -10.86756 -10.44110 -10.40961 -10.26933 -8.95103 -8.07779 -6.24919 -0.74547 0.08341 1.14068 1.30569 1.34513 1.43133 1.68326 2.27763 2.37764 2.62067 2.78071 3.13978 3.36863 3.40113 3.60047 3.63233 3.80373 3.93463 4.25413 4.27299 4.34889 4.50110 4.53537 4.57496 4.60506 4.69201 4.78207 4.83871 4.92750 4.94956 4.98481 4.99848 5.05103 5.19888 5.29999 5.33923 5.44584 5.48433 5.52994 5.55138 5.66899 5.82972 6.01049 6.04319 6.21093 6.35608 6.65448 6.70650 6.96965 7.45126 8.89725 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.004267 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.164531 B = 6560.343229 C = 7684.501996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C 0.220 3.780 4 H 0.013 0.987 5 C -0.550 4.550 6 H 0.041 0.959 7 C 0.030 3.970 8 N -0.907 5.907 9 Si 0.930 3.070 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.513 5.513 14 C 0.060 3.940 15 C -0.098 4.098 16 C 0.144 3.856 17 C -0.095 4.095 18 C 0.062 3.938 19 O -0.319 6.319 20 C 0.519 3.481 21 O -0.488 6.488 22 C -0.002 4.002 23 N -0.462 5.462 24 C 0.094 3.906 25 C -0.103 4.103 26 C -0.042 4.042 27 C -0.121 4.121 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.005 0.995 41 H 0.070 0.930 42 H 0.203 0.797 43 H 0.204 0.796 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.364 6.542 17.438 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 C 0.112 3.888 4 H 0.031 0.969 5 C -0.589 4.589 6 H 0.059 0.941 7 C -0.171 4.171 8 N -0.546 5.546 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.237 5.237 14 C -0.069 4.069 15 C -0.135 4.135 16 C 0.106 3.894 17 C -0.132 4.132 18 C -0.067 4.067 19 O -0.233 6.233 20 C 0.361 3.639 21 O -0.375 6.375 22 C -0.137 4.137 23 N -0.174 5.174 24 C -0.066 4.066 25 C -0.122 4.122 26 C -0.067 4.067 27 C -0.125 4.125 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.025 0.975 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.023 0.977 41 H 0.088 0.912 42 H 0.219 0.781 43 H 0.221 0.779 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.444 6.853 17.648 24.432 hybrid contribution 2.514 -0.329 -1.181 2.798 sum -12.930 6.524 16.467 21.929 Atomic orbital electron populations 1.21567 0.95341 0.99990 1.01318 1.21369 0.95286 0.97648 0.99526 1.19050 0.91006 0.91778 0.86921 0.96892 1.22000 0.94608 1.41072 1.01227 0.94107 1.25430 1.00768 0.95398 0.95463 1.70005 1.36068 1.44158 1.04418 0.85985 0.82918 0.78216 0.77129 1.20082 1.20604 1.20997 1.62445 1.56574 1.01602 1.03082 1.21905 0.95720 0.99220 0.90009 1.21896 1.04842 0.89117 0.97644 1.21593 0.74806 0.98375 0.94577 1.21856 1.02727 0.98810 0.89849 1.21831 0.97358 0.89823 0.97680 1.87461 1.29327 1.66369 1.40174 1.20859 0.88220 0.75026 0.79841 1.90812 1.26985 1.49657 1.70025 1.21436 0.94237 1.02507 0.95512 1.66939 1.27864 1.13184 1.09385 1.23729 0.85785 0.96490 1.00576 1.23088 1.02594 0.93074 0.93470 1.21419 0.94338 0.95606 0.95309 1.21506 0.96463 0.98382 0.96111 0.93635 0.91173 0.94853 0.93882 0.94436 0.92940 0.90335 0.97471 0.90674 0.85219 0.90650 0.85178 0.97692 0.91181 0.78067 0.77930 0.79236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.35 9.79 71.98 0.70 -3.65 16 2 C -0.10 -4.39 5.14 30.59 0.16 -4.24 16 3 C 0.22 10.38 1.61 44.17 0.07 10.46 16 4 H 0.01 0.70 8.00 -2.39 -0.02 0.68 16 5 C -0.55 -29.92 7.17 25.60 0.18 -29.74 16 6 H 0.04 2.34 5.86 -2.91 -0.02 2.32 16 7 C 0.03 1.66 5.25 84.66 0.44 2.10 16 8 N -0.91 -51.78 11.90 21.45 0.26 -51.52 16 9 Si 0.93 45.36 29.54 68.60 2.03 47.39 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 13 N -0.51 -19.25 4.00 -875.35 -3.50 -22.75 16 14 C 0.06 2.13 4.68 86.34 0.40 2.53 16 15 C -0.10 -2.44 5.15 30.60 0.16 -2.28 16 16 C 0.14 3.79 0.90 -11.65 -0.01 3.78 16 17 C -0.09 -2.39 5.16 30.60 0.16 -2.23 16 18 C 0.06 2.23 5.06 86.34 0.44 2.67 16 19 O -0.32 -11.75 9.58 -53.04 -0.51 -12.26 16 20 C 0.52 19.25 8.60 70.39 0.61 19.85 16 21 O -0.49 -21.59 18.04 19.75 0.36 -21.23 16 22 C 0.00 -0.05 7.43 41.86 0.31 0.27 16 23 N -0.46 -11.56 10.39 -184.84 -1.92 -13.48 16 24 C 0.09 1.20 11.16 84.85 0.95 2.15 16 25 C -0.10 -0.64 10.13 22.49 0.23 -0.41 16 26 C -0.04 -0.41 10.16 22.35 0.23 -0.19 16 27 C -0.12 -2.48 5.00 -19.67 -0.10 -2.58 16 28 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 2.16 7.71 -2.38 -0.02 2.14 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.04 2.20 6.59 -2.39 -0.02 2.18 16 32 H 0.04 1.60 6.21 -2.39 -0.01 1.58 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.08 2.77 6.07 -2.39 -0.01 2.75 16 35 H 0.01 0.31 6.08 -2.38 -0.01 0.29 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.00 0.21 7.00 -2.39 -0.02 0.19 16 41 H 0.07 2.52 8.03 -2.38 -0.02 2.50 16 42 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 43 H 0.20 -0.76 8.06 -2.91 -0.02 -0.78 16 44 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -77.05 350.07 2.65 -74.41 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.01 Total: 0.96 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.93 Total: -1.51 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -5.17 Total: -87.76 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.15 Total: -33.49 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -77.05 2.65 -74.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.005 kcal (2) G-P(sol) polarization free energy of solvation -77.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds