Wall clock time and date at job start Tue Mar 31 2020 10:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47016 * 2 1 4 4 H 1.09000 * 109.47125 * 177.79043 * 3 2 1 5 5 C 1.50697 * 109.47118 * 297.78661 * 3 2 1 6 6 H 1.08005 * 119.99877 * 119.99869 * 5 3 2 7 7 C 1.37875 * 120.00149 * 300.00213 * 5 3 2 8 8 N 1.31512 * 120.00226 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00166 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47283 * 59.99575 * 9 7 5 11 11 H 1.48492 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46704 * 299.99643 * 9 7 5 13 13 N 1.46900 * 109.47200 * 57.78498 * 3 2 1 14 14 C 1.46845 * 110.99928 * 182.41483 * 13 3 2 15 15 C 1.53079 * 109.48695 * 173.88354 * 14 13 3 16 16 C 1.52937 * 109.26305 * 58.79474 * 15 14 13 17 17 C 1.52916 * 109.76954 * 302.93310 * 16 15 14 18 18 C 1.46844 * 110.99849 * 58.13035 * 13 3 2 19 19 O 1.45229 * 110.00572 * 64.15836 * 16 15 14 20 20 C 1.34361 * 108.88439 * 119.34009 * 19 16 15 21 21 O 1.21432 * 124.91076 * 180.02562 * 20 19 16 22 22 C 1.47945 * 110.18057 * 0.06885 * 20 19 16 23 23 N 1.32921 * 132.23013 * 180.02562 * 22 20 19 24 24 C 1.31435 * 121.67704 * 179.97438 * 23 22 20 25 25 C 1.38632 * 121.18414 * 0.02562 * 24 23 22 26 26 C 1.38768 * 119.15571 * 359.96737 * 25 24 23 27 27 C 1.38054 * 118.26776 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.46943 * 305.08843 * 1 2 3 29 29 H 1.09003 * 109.46700 * 65.08269 * 1 2 3 30 30 H 1.08989 * 109.46933 * 185.08687 * 1 2 3 31 31 H 1.08997 * 109.47002 * 240.00358 * 2 1 3 32 32 H 1.09001 * 109.46950 * 119.99742 * 2 1 3 33 33 H 0.97001 * 120.00390 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47086 * 53.88199 * 14 13 3 35 35 H 1.09001 * 109.47398 * 293.88511 * 14 13 3 36 36 H 1.09006 * 109.50826 * 298.86137 * 15 14 13 37 37 H 1.09005 * 109.50975 * 178.73160 * 15 14 13 38 38 H 1.09010 * 109.50547 * 176.98359 * 17 16 15 39 39 H 1.09002 * 109.50364 * 297.09656 * 17 16 15 40 40 H 1.09001 * 109.46417 * 306.11406 * 18 13 3 41 41 H 1.09007 * 109.46725 * 66.09238 * 18 13 3 42 42 H 1.08007 * 119.40270 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.42173 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.86095 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1293 1.4428 0.0396 5 6 1.5830 2.1369 -1.2570 6 1 0.9591 3.0161 -1.1918 7 6 1.9613 1.6499 -2.4901 8 7 2.7214 0.5796 -2.5694 9 14 1.3954 2.5110 -4.0482 10 1 1.8908 3.9109 -4.0480 11 1 1.9334 1.7952 -5.2327 12 1 -0.0886 2.5112 -4.1024 13 7 1.5072 2.1503 1.1718 14 6 1.9301 3.5565 1.1744 15 6 1.2354 4.2966 2.3203 16 6 1.5955 3.6252 3.6463 17 6 1.2010 2.1484 3.6022 18 6 1.8962 1.4750 2.4163 19 8 3.0203 3.7525 3.8969 20 6 3.2016 4.4350 5.0399 21 8 4.2820 4.7076 5.5226 22 6 1.8947 4.8055 5.6259 23 7 1.5665 5.4718 6.7283 24 6 0.3123 5.6876 7.0567 25 6 -0.7270 5.2267 6.2634 26 6 -0.4319 4.5260 5.1025 27 6 0.8951 4.3168 4.7845 28 1 -0.3633 0.5907 0.8409 29 1 -0.3633 0.4330 -0.9321 30 1 -0.3633 -1.0235 0.0911 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9879 0.2372 -3.4370 34 1 1.6587 4.0194 0.2256 35 1 3.0104 3.6108 1.3092 36 1 0.1556 4.2602 2.1754 37 1 1.5662 5.3351 2.3365 38 1 1.5079 1.6619 4.5282 39 1 0.1205 2.0637 3.4868 40 1 1.6001 0.4271 2.3688 41 1 2.9769 1.5416 2.5432 42 1 0.0874 6.2331 7.9613 43 1 -1.7532 5.4106 6.5453 44 1 -1.2199 4.1548 4.4641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:56 Heat of formation + Delta-G solvation = -22.973739 kcal Electronic energy + Delta-G solvation = -27357.850968 eV Core-core repulsion = 23661.820599 eV Total energy + Delta-G solvation = -3696.030369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28747 -39.46289 -38.58889 -37.13198 -34.49600 -33.07022 -32.29613 -31.52146 -30.77140 -29.82419 -26.57116 -25.43629 -24.80028 -23.50376 -22.78220 -22.48167 -21.50510 -19.78231 -19.02174 -17.70817 -17.23236 -16.84575 -16.51244 -16.17485 -15.73727 -15.25950 -14.54944 -14.42452 -14.26730 -14.03497 -13.80411 -13.78376 -13.62345 -13.49627 -13.09847 -12.84478 -12.24905 -12.02359 -11.79421 -11.54146 -11.43214 -11.08616 -10.96890 -10.91662 -10.89524 -10.63184 -10.57875 -10.25136 -10.12319 -9.95311 -9.79396 -9.56860 -9.45563 -9.39551 -8.81978 -8.42335 -7.23038 -6.03146 -4.07508 0.08281 0.73052 2.16726 2.72113 3.16300 3.29283 3.34861 3.36368 3.38502 3.71529 4.23382 4.34855 4.37091 4.48072 4.65646 4.67620 4.82036 4.85692 4.98669 5.28115 5.40950 5.43830 5.56323 5.59702 5.63903 5.78652 5.82771 5.88786 6.01749 6.19195 6.34604 6.43200 6.51192 6.55221 6.58857 6.66110 6.74257 7.08106 7.14925 7.27636 7.37342 7.47793 7.60758 7.69767 7.79520 8.10800 8.29894 8.53809 8.96860 9.56708 11.03152 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.003588 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.152037 B = 7801.325169 C = 7902.740380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.218 3.782 4 H -0.001 1.001 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.063 3.937 15 C -0.108 4.108 16 C 0.149 3.851 17 C -0.105 4.105 18 C 0.050 3.950 19 O -0.291 6.291 20 C 0.528 3.472 21 O -0.434 6.434 22 C 0.033 3.967 23 N -0.423 5.423 24 C 0.098 3.902 25 C -0.137 4.137 26 C -0.046 4.046 27 C -0.132 4.132 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.093 0.907 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.096 0.904 35 H 0.030 0.970 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.169 0.831 43 H 0.151 0.849 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 6.362 15.425 19.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.253 5.253 14 C -0.065 4.065 15 C -0.146 4.146 16 C 0.111 3.889 17 C -0.143 4.143 18 C -0.079 4.079 19 O -0.205 6.205 20 C 0.367 3.633 21 O -0.317 6.317 22 C -0.105 4.105 23 N -0.133 5.133 24 C -0.061 4.061 25 C -0.157 4.157 26 C -0.072 4.072 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.111 0.889 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.049 0.951 42 H 0.186 0.814 43 H 0.169 0.831 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.573 6.552 15.821 19.151 hybrid contribution -0.157 0.210 -1.183 1.212 sum -8.730 6.762 14.638 18.336 Atomic orbital electron populations 1.21462 0.97304 0.97245 1.01796 1.21594 0.95108 0.98174 1.00205 1.19235 0.92638 0.90726 0.86158 0.98308 1.21004 1.31210 1.11968 0.89634 0.91991 1.24891 0.95145 0.95045 0.98924 1.69858 1.36024 1.22492 1.24645 0.86648 0.78989 0.79603 0.82686 1.20392 1.21428 1.20270 1.62089 1.60140 1.01030 1.02078 1.21937 0.96682 0.90363 0.97560 1.21942 1.02753 0.98724 0.91177 1.21456 0.75543 0.98123 0.93779 1.21860 1.02490 0.90077 0.99849 1.22060 0.97176 0.98955 0.89691 1.87454 1.27240 1.67578 1.38235 1.20211 0.87632 0.75942 0.79560 1.90882 1.29446 1.50312 1.61015 1.22008 0.95639 0.99318 0.93519 1.67025 1.21626 1.10115 1.14562 1.22971 0.86590 0.97079 0.99510 1.22498 1.01674 0.96898 0.94586 1.20871 0.94386 0.95618 0.96332 1.21634 0.95523 0.98667 0.97637 0.93507 0.92703 0.96684 0.88924 0.96762 0.92905 0.88632 0.95136 0.88770 0.91233 0.91278 0.88735 0.89834 0.95069 0.81383 0.83149 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 9.50 37.16 0.35 -2.09 16 2 C -0.11 -2.53 5.02 -26.73 -0.13 -2.66 16 3 C 0.22 5.09 1.76 -68.86 -0.12 4.97 16 4 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 5 C -0.50 -12.60 6.79 -34.44 -0.23 -12.83 16 6 H 0.06 1.54 6.53 -52.48 -0.34 1.20 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -24.44 11.31 55.43 0.63 -23.81 16 9 Si 0.89 20.47 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 13 N -0.53 -10.04 3.56 -228.03 -0.81 -10.85 16 14 C 0.06 1.12 5.12 -3.81 -0.02 1.10 16 15 C -0.11 -1.48 5.15 -26.72 -0.14 -1.62 16 16 C 0.15 2.00 0.90 -91.95 -0.08 1.91 16 17 C -0.10 -1.37 5.16 -26.73 -0.14 -1.51 16 18 C 0.05 0.83 5.06 -3.81 -0.02 0.81 16 19 O -0.29 -4.75 9.59 -39.23 -0.38 -5.12 16 20 C 0.53 8.74 8.60 34.71 0.30 9.04 16 21 O -0.43 -8.35 18.04 -18.89 -0.34 -8.69 16 22 C 0.03 0.46 7.43 -82.95 -0.62 -0.16 16 23 N -0.42 -5.45 10.39 -9.78 -0.10 -5.55 16 24 C 0.10 0.82 11.16 -17.58 -0.20 0.63 16 25 C -0.14 -0.89 10.13 -39.24 -0.40 -1.29 16 26 C -0.05 -0.38 10.17 -39.45 -0.40 -0.78 16 27 C -0.13 -1.52 4.99 -104.33 -0.52 -2.04 16 28 H 0.05 0.88 7.37 -51.93 -0.38 0.50 16 29 H 0.05 1.22 7.47 -51.93 -0.39 0.83 16 30 H 0.01 0.26 8.14 -51.94 -0.42 -0.16 16 31 H 0.09 2.37 6.01 -51.93 -0.31 2.06 16 32 H 0.01 0.29 6.37 -51.93 -0.33 -0.04 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.10 1.83 6.13 -51.93 -0.32 1.52 16 35 H 0.03 0.60 7.84 -51.93 -0.41 0.19 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.39 5.99 -51.93 -0.31 1.08 16 41 H 0.03 0.57 7.85 -51.92 -0.41 0.17 16 42 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -30.46 348.88 -9.37 -39.83 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.14 Total: -1.50 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.46 Total: -5.01 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.29 Total: -40.22 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.72 Total: -13.81 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.46 -9.37 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.859 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds