Wall clock time and date at job start Tue Mar 31 2020 10:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.09003 * 109.46426 * 57.27006 * 3 2 1 5 5 C 1.50698 * 109.47284 * 177.27042 * 3 2 1 6 6 H 1.08002 * 119.99518 * 114.30493 * 5 3 2 7 7 C 1.37874 * 120.00095 * 294.30260 * 5 3 2 8 8 N 1.31518 * 119.99684 * 154.26210 * 7 5 3 9 9 Si 1.86798 * 120.00356 * 334.26797 * 7 5 3 10 10 H 1.48499 * 109.47212 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.46779 * 299.99818 * 9 7 5 12 12 H 1.48498 * 109.47413 * 59.99522 * 9 7 5 13 13 N 1.46893 * 109.46825 * 297.27502 * 3 2 1 14 14 C 1.46844 * 111.00261 * 299.29008 * 13 3 2 15 15 C 1.53076 * 109.49678 * 173.89007 * 14 13 3 16 16 C 1.52951 * 109.25524 * 58.79724 * 15 14 13 17 17 C 1.52925 * 109.75824 * 302.91156 * 16 15 14 18 18 C 1.46847 * 110.99864 * 174.99614 * 13 3 2 19 19 O 1.45278 * 109.97232 * 64.06666 * 16 15 14 20 20 C 1.34467 * 108.93295 * 119.38384 * 19 16 15 21 21 O 1.21428 * 124.96261 * 180.02562 * 20 19 16 22 22 C 1.47459 * 110.07883 * 0.04756 * 20 19 16 23 23 C 1.39549 * 133.69212 * 179.97438 * 22 20 19 24 24 C 1.38276 * 118.71345 * 180.02562 * 23 22 20 25 25 N 1.31835 * 121.06809 * 0.02562 * 24 23 22 26 26 C 1.32025 * 122.09710 * 0.02562 * 25 24 23 27 27 C 1.37620 * 120.51562 * 359.96167 * 26 25 24 28 28 H 1.08997 * 109.47573 * 300.00560 * 1 2 3 29 29 H 1.09003 * 109.46653 * 60.00279 * 1 2 3 30 30 H 1.08995 * 109.47182 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47569 * 239.99936 * 2 1 3 32 32 H 1.09008 * 109.47110 * 119.99635 * 2 1 3 33 33 H 0.96993 * 119.99947 * 354.96667 * 8 7 5 34 34 H 1.08999 * 109.46674 * 293.90227 * 14 13 3 35 35 H 1.09001 * 109.46339 * 53.88804 * 14 13 3 36 36 H 1.08997 * 109.50979 * 298.86329 * 15 14 13 37 37 H 1.08998 * 109.50413 * 178.72525 * 15 14 13 38 38 H 1.08995 * 109.50818 * 297.12980 * 17 16 15 39 39 H 1.09002 * 109.50852 * 177.00293 * 17 16 15 40 40 H 1.08998 * 109.46481 * 306.10760 * 18 13 3 41 41 H 1.09000 * 109.46434 * 66.09403 * 18 13 3 42 42 H 1.08000 * 120.63956 * 0.02622 * 23 22 20 43 43 H 1.08004 * 119.46642 * 179.97438 * 24 23 22 44 44 H 1.07999 * 119.74705 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6372 1.9702 0.8646 5 6 3.5455 1.4430 0.0677 6 1 4.1233 1.8146 -0.7657 7 6 4.1852 0.9692 1.1934 8 7 5.4079 0.4933 1.1036 9 14 3.3151 1.0031 2.8460 10 1 4.2109 0.4412 3.8887 11 1 2.9678 2.4044 3.1939 12 1 2.0748 0.1901 2.7693 13 7 1.6049 2.1157 -1.2310 14 6 2.1435 1.4406 -2.4186 15 6 1.5492 2.0732 -3.6794 16 6 1.8936 3.5632 -3.7065 17 6 1.3755 4.2367 -2.4350 18 6 1.9747 3.5367 -1.2126 19 8 3.3320 3.7383 -3.8109 20 6 3.6089 4.4088 -4.9431 21 8 4.7235 4.7119 -5.3174 22 6 2.3611 4.7227 -5.6635 23 6 2.0787 5.3856 -6.8587 24 6 0.7595 5.5083 -7.2545 25 7 -0.2191 5.0126 -6.5234 26 6 0.0056 4.3798 -5.3867 27 6 1.2900 4.2141 -4.9212 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 5.8325 0.4077 0.2357 34 1 3.2282 1.5461 -2.4358 35 1 1.8820 0.3829 -2.3851 36 1 0.4662 1.9501 -3.6727 37 1 1.9661 1.5873 -4.5616 38 1 0.2886 4.1623 -2.4007 39 1 1.6692 5.2864 -2.4336 40 1 1.5906 4.0002 -0.3039 41 1 3.0605 3.6298 -1.2368 42 1 2.8751 5.7947 -7.4626 43 1 0.5271 6.0194 -8.1772 44 1 -0.8250 3.9883 -4.8181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179614.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:04 Heat of formation + Delta-G solvation = -27.609361 kcal Electronic energy + Delta-G solvation = -27531.885025 eV Core-core repulsion = 23835.653641 eV Total energy + Delta-G solvation = -3696.231384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30058 -39.55329 -38.67486 -37.22177 -34.44370 -33.10150 -32.26820 -31.86600 -30.72405 -30.08047 -26.85887 -25.47437 -24.67450 -23.14736 -22.72291 -22.35963 -21.58412 -19.90852 -19.12800 -17.89098 -17.61257 -16.94076 -16.51194 -16.44362 -15.70513 -15.09510 -14.94279 -14.52071 -14.23759 -14.17333 -14.11409 -13.93402 -13.63477 -13.43456 -12.86912 -12.68531 -12.41401 -12.25484 -11.91782 -11.54855 -11.43054 -11.41294 -11.00434 -10.82719 -10.77180 -10.61911 -10.46322 -10.36260 -10.18510 -10.11620 -9.95314 -9.78258 -9.60274 -9.35081 -9.07226 -8.31196 -7.37720 -6.40089 -4.08737 0.11328 0.56724 2.28158 2.87272 3.32498 3.34458 3.38576 3.42615 3.59365 3.65052 4.03812 4.24033 4.48522 4.53367 4.65563 4.68705 4.75101 4.85677 5.15382 5.24305 5.27678 5.38059 5.41581 5.63231 5.64835 5.77883 5.81963 5.84963 5.99079 6.03944 6.08175 6.25108 6.26076 6.37514 6.60068 6.62681 6.71971 6.74256 6.76236 6.94654 7.18623 7.23042 7.24403 7.38903 7.83268 8.02534 8.15155 8.36934 8.91828 9.58054 10.86347 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.004079 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.096474 B = 6863.202835 C = 7639.317162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.192 3.808 4 H 0.031 0.969 5 C -0.641 4.641 6 H 0.061 0.939 7 C 0.044 3.956 8 N -0.893 5.893 9 Si 1.032 2.968 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.526 5.526 14 C 0.060 3.940 15 C -0.109 4.109 16 C 0.152 3.848 17 C -0.108 4.108 18 C 0.063 3.937 19 O -0.291 6.291 20 C 0.518 3.482 21 O -0.447 6.447 22 C -0.147 4.147 23 C -0.093 4.093 24 C 0.094 3.906 25 N -0.454 5.454 26 C 0.131 3.869 27 C -0.133 4.133 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.270 0.730 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.149 0.851 43 H 0.170 0.830 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 7.498 -13.416 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.085 3.915 4 H 0.048 0.952 5 C -0.678 4.678 6 H 0.079 0.921 7 C -0.163 4.163 8 N -0.525 5.525 9 Si 0.860 3.140 10 H -0.212 1.212 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.250 5.250 14 C -0.068 4.068 15 C -0.146 4.146 16 C 0.114 3.886 17 C -0.146 4.146 18 C -0.066 4.066 19 O -0.206 6.206 20 C 0.359 3.641 21 O -0.331 6.331 22 C -0.157 4.157 23 C -0.113 4.113 24 C -0.063 4.063 25 N -0.163 5.163 26 C -0.025 4.025 27 C -0.136 4.136 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.166 0.834 43 H 0.187 0.813 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -13.334 7.286 -12.096 19.422 hybrid contribution 1.702 0.372 -1.442 2.262 sum -11.631 7.658 -13.538 19.422 Atomic orbital electron populations 1.21747 0.97812 0.99144 1.01341 1.21931 0.93363 0.99164 1.01076 1.19509 0.94513 0.90183 0.87325 0.95153 1.22440 0.91547 1.48500 1.05342 0.92050 1.25625 0.96058 0.91897 1.02765 1.70832 1.15761 1.37268 1.28632 0.84198 0.76015 0.77087 0.76723 1.21244 1.21061 1.20153 1.62357 1.58240 1.01110 1.03328 1.21911 0.98476 0.98250 0.88207 1.21933 1.02593 0.89964 1.00154 1.21440 0.75789 0.98133 0.93234 1.21910 1.01663 0.98823 0.92161 1.21829 0.99505 0.89855 0.95412 1.87491 1.26018 1.67949 1.39098 1.20503 0.88136 0.75628 0.79876 1.90874 1.25382 1.49603 1.67273 1.21364 0.95676 1.01208 0.97411 1.21970 0.98865 0.96150 0.94282 1.22941 0.87697 0.96475 0.99191 1.67817 1.36305 1.07241 1.04940 1.22026 0.94047 0.94456 0.91973 1.21939 0.95766 0.98539 0.97341 0.94015 0.92371 0.94997 0.93001 0.92622 0.92046 0.93170 0.90294 0.88975 0.91321 0.88914 0.91224 0.90866 0.93069 0.83363 0.81277 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.78 37.16 0.36 -2.04 16 2 C -0.12 -2.39 4.93 -26.73 -0.13 -2.53 16 3 C 0.19 4.20 1.37 -68.87 -0.09 4.11 16 4 H 0.03 0.69 6.63 -51.93 -0.34 0.35 16 5 C -0.64 -16.83 7.37 -34.44 -0.25 -17.09 16 6 H 0.06 1.79 6.11 -52.49 -0.32 1.47 16 7 C 0.04 1.23 5.19 -17.82 -0.09 1.14 16 8 N -0.89 -26.75 13.70 55.43 0.76 -25.99 16 9 Si 1.03 24.33 26.56 -169.99 -4.52 19.81 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.02 6.24 56.52 0.35 -5.67 16 13 N -0.53 -9.68 3.99 -228.03 -0.91 -10.59 16 14 C 0.06 1.06 4.69 -3.82 -0.02 1.04 16 15 C -0.11 -1.47 5.16 -26.72 -0.14 -1.61 16 16 C 0.15 2.08 0.91 -91.96 -0.08 1.99 16 17 C -0.11 -1.44 5.15 -26.72 -0.14 -1.58 16 18 C 0.06 1.10 5.01 -3.81 -0.02 1.08 16 19 O -0.29 -4.99 9.58 -39.51 -0.38 -5.37 16 20 C 0.52 8.35 8.59 34.49 0.30 8.65 16 21 O -0.45 -8.33 18.04 -18.87 -0.34 -8.67 16 22 C -0.15 -1.84 6.34 -105.03 -0.67 -2.50 16 23 C -0.09 -0.88 10.18 -39.08 -0.40 -1.28 16 24 C 0.09 0.78 11.17 -17.54 -0.20 0.58 16 25 N -0.45 -4.49 10.34 -13.35 -0.14 -4.63 16 26 C 0.13 1.27 11.18 -17.69 -0.20 1.07 16 27 C -0.13 -1.53 5.03 -104.35 -0.52 -2.06 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.07 6.15 -51.93 -0.32 0.75 16 32 H 0.06 1.23 5.70 -51.92 -0.30 0.94 16 33 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 34 H 0.05 1.08 6.24 -51.93 -0.32 0.75 16 35 H 0.08 1.40 5.96 -51.93 -0.31 1.09 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.05 1.08 6.79 -51.93 -0.35 0.73 16 42 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.17 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -31.21 345.81 -8.69 -39.90 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.09 Total: 1.33 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.29 Total: -11.01 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.29 Total: -41.21 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.72 Total: -14.04 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.52 Total: 19.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.21 -8.69 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179614.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.295 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds