Wall clock time and date at job start Tue Mar 31 2020 10:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00066 * 2 1 4 4 H 1.09001 * 109.58297 * 353.23867 * 3 2 1 5 5 C 1.53197 * 109.70287 * 232.88482 * 3 2 1 6 6 C 1.53037 * 109.31067 * 185.50530 * 5 3 2 7 7 C 1.53043 * 109.53706 * 61.36843 * 6 5 3 8 8 C 1.53625 * 109.23756 * 298.50561 * 7 6 5 9 9 N 1.46920 * 108.54405 * 54.86106 * 8 7 6 10 10 C 1.34779 * 120.63245 * 126.36463 * 9 8 7 11 11 O 1.21586 * 119.99816 * 187.46058 * 10 9 8 12 12 N 1.34777 * 119.99823 * 7.46682 * 10 9 8 13 13 C 1.40024 * 119.99679 * 187.49204 * 12 10 9 14 14 C 1.38908 * 120.00178 * 334.93471 * 13 12 10 15 15 C 1.38012 * 119.99754 * 179.81546 * 14 13 12 16 16 C 1.38902 * 120.00218 * 0.44482 * 15 14 13 17 17 O 1.35784 * 120.00112 * 179.76947 * 16 15 14 18 18 C 1.34813 * 117.00152 * 188.82914 * 17 16 15 19 19 H 1.08002 * 119.99816 * 6.81153 * 18 17 16 20 20 C 1.38623 * 119.99977 * 186.81105 * 18 17 16 21 21 N 1.31572 * 120.00155 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47291 * 90.00275 * 22 20 18 24 24 H 1.48501 * 109.47461 * 210.00543 * 22 20 18 25 25 H 1.48501 * 109.47143 * 330.00092 * 22 20 18 26 26 C 1.38900 * 119.99849 * 359.78558 * 16 15 14 27 27 C 1.38004 * 120.00459 * 0.02562 * 26 16 15 28 28 H 1.08005 * 119.99782 * 185.02342 * 1 2 3 29 29 H 1.07993 * 120.00115 * 5.02214 * 1 2 3 30 30 H 1.08004 * 120.00195 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.49863 * 305.45421 * 5 3 2 32 32 H 1.09005 * 109.49866 * 65.55474 * 5 3 2 33 33 H 1.09008 * 109.45990 * 181.38209 * 6 5 3 34 34 H 1.09000 * 109.46598 * 301.35570 * 6 5 3 35 35 H 1.08993 * 109.50288 * 58.58753 * 7 6 5 36 36 H 1.09007 * 109.49747 * 178.65244 * 7 6 5 37 37 H 1.08999 * 109.74392 * 295.12020 * 8 7 6 38 38 H 1.08998 * 109.66421 * 174.55507 * 8 7 6 39 39 H 0.96998 * 120.00146 * 7.48454 * 12 10 9 40 40 H 1.07998 * 120.00418 * 0.02562 * 14 13 12 41 41 H 1.08007 * 119.99562 * 180.19087 * 15 14 13 42 42 H 0.96996 * 120.00610 * 179.97438 * 21 20 18 43 43 H 1.08009 * 119.99911 * 179.97438 * 26 16 15 44 44 H 1.08003 * 120.00217 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3630 2.1314 -0.1209 5 6 3.0755 1.3172 -1.1501 6 6 3.9289 2.5843 -1.0599 7 6 4.7001 2.5890 0.2620 8 6 3.7023 2.5944 1.4301 9 7 2.7883 1.4554 1.2692 10 6 2.6137 0.5685 2.2688 11 8 1.9630 -0.4410 2.0792 12 7 3.1603 0.8006 3.4787 13 6 3.1141 -0.1882 4.4691 14 6 2.1154 -1.1533 4.4410 15 6 2.0722 -2.1301 5.4151 16 6 3.0218 -2.1427 6.4287 17 8 2.9765 -3.1009 7.3897 18 6 3.8077 -2.9534 8.4408 19 1 4.3890 -2.0494 8.5468 20 6 3.9161 -3.9621 9.3855 21 7 4.7269 -3.8180 10.4116 22 14 2.9101 -5.5254 9.2025 23 1 3.6808 -6.5207 8.4146 24 1 2.6113 -6.0820 10.5464 25 1 1.6383 -5.2162 8.5009 26 6 4.0176 -1.1748 6.4595 27 6 4.0632 -0.2003 5.4834 28 1 -0.5400 -0.9318 0.0819 29 1 -0.5400 0.9316 -0.0819 30 1 1.8501 -0.9353 -0.0004 31 1 3.7183 0.4398 -1.0784 32 1 2.5446 1.3031 -2.1020 33 1 4.6335 2.6075 -1.8914 34 1 3.2832 3.4612 -1.1066 35 1 5.3275 1.6997 0.3204 36 1 5.3259 3.4799 0.3150 37 1 3.1327 3.5237 1.4235 38 1 4.2409 2.5004 2.3730 39 1 3.5858 1.6525 3.6634 40 1 1.3748 -1.1413 3.6551 41 1 1.2975 -2.8823 5.3915 42 1 4.8026 -4.5236 11.0729 43 1 4.7558 -1.1843 7.2479 44 1 4.8373 0.5525 5.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321327297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:58 Heat of formation + Delta-G solvation = 15.106121 kcal Electronic energy + Delta-G solvation = -26114.032931 eV Core-core repulsion = 22419.653829 eV Total energy + Delta-G solvation = -3694.379102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99451 -39.17700 -38.03028 -36.47698 -34.91045 -33.56590 -32.84552 -32.21242 -30.22831 -30.11138 -28.06614 -25.61543 -24.95598 -23.69813 -22.35371 -21.99549 -20.83490 -20.14187 -19.69194 -18.16172 -17.72562 -17.26334 -16.68286 -15.82188 -15.62731 -15.07903 -14.75026 -14.65311 -14.16394 -14.14438 -13.86649 -13.81393 -13.71509 -13.56791 -13.32904 -12.85599 -12.47941 -12.28041 -12.17069 -11.95277 -11.82928 -11.68888 -11.46099 -11.27377 -11.04636 -10.93008 -10.84697 -10.74458 -10.30797 -10.10234 -9.70928 -9.33732 -8.85172 -8.71054 -8.51716 -8.20838 -6.94709 -6.37856 -4.03258 2.06096 2.12441 2.25993 2.85023 3.21260 3.26620 3.30385 3.45229 3.79144 4.28177 4.36704 4.39344 4.47751 4.56568 4.65966 4.86381 4.91238 4.99179 5.06642 5.12908 5.16498 5.32888 5.44876 5.46959 5.51676 5.54004 5.64313 5.69157 5.78186 5.92455 6.00278 6.07414 6.15610 6.18374 6.36912 6.60877 6.75363 6.80313 6.86036 6.90498 7.14201 7.18058 7.29476 7.66224 7.82145 7.94993 8.07758 8.58760 8.98266 9.62372 10.70149 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026250 B = 0.002753 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.395227 B =10166.860504 C =10945.587954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.100 4.100 3 C 0.190 3.810 4 H 0.073 0.927 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.135 4.135 8 C 0.109 3.891 9 N -0.627 5.627 10 C 0.704 3.296 11 O -0.552 6.552 12 N -0.673 5.673 13 C 0.066 3.934 14 C -0.089 4.089 15 C -0.175 4.175 16 C 0.146 3.854 17 O -0.220 6.220 18 C -0.386 4.386 19 H 0.104 0.896 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.201 4.201 27 C -0.102 4.102 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.398 0.602 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.278 0.722 43 H 0.136 0.864 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 15.287 -22.172 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.119 4.119 3 C 0.087 3.913 4 H 0.091 0.909 5 C -0.168 4.168 6 C -0.157 4.157 7 C -0.174 4.174 8 C -0.014 4.014 9 N -0.365 5.365 10 C 0.407 3.593 11 O -0.429 6.429 12 N -0.321 5.321 13 C -0.027 4.027 14 C -0.109 4.109 15 C -0.195 4.195 16 C 0.094 3.906 17 O -0.125 6.125 18 C -0.462 4.462 19 H 0.122 0.878 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.221 4.221 27 C -0.123 4.123 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.170 0.830 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.154 0.846 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.398 14.265 -22.097 26.410 hybrid contribution 0.230 -0.067 0.375 0.445 sum -2.168 14.198 -21.722 26.041 Atomic orbital electron populations 1.23458 0.95548 1.01316 1.05046 1.22592 0.95791 0.96890 0.96581 1.20219 0.92304 0.96646 0.82086 0.90925 1.21976 0.98019 0.98791 0.97974 1.21513 0.98844 0.97947 0.97357 1.21992 0.97804 1.02898 0.94661 1.21757 0.91446 0.89165 0.99072 1.47478 1.47111 1.27955 1.13991 1.15928 0.80384 0.82936 0.80037 1.90817 1.44582 1.27414 1.80099 1.42572 1.61053 1.17705 1.10761 1.17220 0.99156 0.94261 0.92092 1.21336 0.97597 0.93620 0.98304 1.20235 1.00803 1.02191 0.96225 1.19211 0.93450 0.89190 0.88760 1.83615 1.57569 1.42810 1.28513 1.20726 1.21926 1.05504 0.98059 0.87837 1.24460 0.96398 0.98636 0.94592 1.69653 1.35650 1.34872 1.11923 0.86184 0.81424 0.81845 0.77490 1.19961 1.20854 1.18286 1.21055 1.01731 0.97542 1.01795 1.20423 0.97179 0.99477 0.95232 0.88468 0.89606 0.86688 0.91103 0.90552 0.91488 0.91733 0.91201 0.90625 0.91220 0.90246 0.76614 0.83017 0.86254 0.91144 0.84610 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.45 14.24 29.01 0.41 -2.03 16 2 C -0.10 -1.17 5.71 -36.03 -0.21 -1.38 16 3 C 0.19 1.81 3.23 -68.75 -0.22 1.59 16 4 H 0.07 0.62 7.81 -51.93 -0.41 0.22 16 5 C -0.13 -0.95 5.36 -26.61 -0.14 -1.10 16 6 C -0.12 -0.68 5.88 -26.69 -0.16 -0.84 16 7 C -0.14 -0.81 6.10 -26.38 -0.16 -0.97 16 8 C 0.11 0.77 6.33 -3.49 -0.02 0.74 16 9 N -0.63 -6.53 2.97 -171.97 -0.51 -7.04 16 10 C 0.70 9.97 8.11 -86.92 -0.71 9.27 16 11 O -0.55 -9.42 9.59 5.29 0.05 -9.37 16 12 N -0.67 -9.25 5.19 -14.18 -0.07 -9.32 16 13 C 0.07 1.16 6.47 -83.62 -0.54 0.61 16 14 C -0.09 -1.72 8.84 -39.42 -0.35 -2.06 16 15 C -0.17 -3.70 9.98 -39.42 -0.39 -4.09 16 16 C 0.15 3.44 6.64 -39.09 -0.26 3.19 16 17 O -0.22 -5.90 8.58 -0.01 0.00 -5.90 16 18 C -0.39 -10.98 9.85 30.87 0.30 -10.68 16 19 H 0.10 2.98 5.64 -52.49 -0.30 2.69 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -25.70 13.96 55.48 0.77 -24.93 16 22 Si 0.90 22.06 28.62 -169.99 -4.86 17.20 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.20 -4.34 9.10 -39.42 -0.36 -4.69 16 27 C -0.10 -1.83 9.93 -39.42 -0.39 -2.22 16 28 H 0.10 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.09 0.86 7.85 -52.49 -0.41 0.45 16 30 H 0.12 1.56 7.38 -52.48 -0.39 1.18 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.51 5.85 -51.93 -0.30 0.20 16 39 H 0.40 4.14 6.49 -40.82 -0.26 3.87 16 40 H 0.15 2.94 5.36 -52.49 -0.28 2.65 16 41 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 42 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.14 3.04 5.80 -52.48 -0.30 2.73 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -31.75 353.15 -8.61 -40.35 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.02 Total: 6.70 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -3.29 Total: -13.01 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.19 Total: -41.29 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.05 Total: -15.27 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.86 Total: 17.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.75 -8.61 -40.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321327297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.457 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds