Wall clock time and date at job start Tue Mar 31 2020 10:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00066 * 2 1 4 4 H 1.09001 * 109.58297 * 353.23867 * 3 2 1 5 5 C 1.53197 * 109.70287 * 232.88482 * 3 2 1 6 6 C 1.53037 * 109.31067 * 185.50530 * 5 3 2 7 7 C 1.53043 * 109.53706 * 61.36843 * 6 5 3 8 8 C 1.53625 * 109.23756 * 298.50561 * 7 6 5 9 9 N 1.46920 * 108.54405 * 54.86106 * 8 7 6 10 10 C 1.34779 * 120.63245 * 126.36463 * 9 8 7 11 11 O 1.21586 * 119.99816 * 187.46058 * 10 9 8 12 12 N 1.34777 * 119.99823 * 7.46682 * 10 9 8 13 13 C 1.40024 * 119.99679 * 187.49204 * 12 10 9 14 14 C 1.38908 * 120.00178 * 334.93471 * 13 12 10 15 15 C 1.38012 * 119.99754 * 179.81546 * 14 13 12 16 16 C 1.38902 * 120.00218 * 0.44482 * 15 14 13 17 17 O 1.35784 * 120.00112 * 179.76947 * 16 15 14 18 18 C 1.34813 * 117.00152 * 188.82914 * 17 16 15 19 19 H 1.08002 * 119.99816 * 6.81153 * 18 17 16 20 20 C 1.38623 * 119.99977 * 186.81105 * 18 17 16 21 21 N 1.31572 * 120.00155 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47291 * 90.00275 * 22 20 18 24 24 H 1.48501 * 109.47461 * 210.00543 * 22 20 18 25 25 H 1.48501 * 109.47143 * 330.00092 * 22 20 18 26 26 C 1.38900 * 119.99849 * 359.78558 * 16 15 14 27 27 C 1.38004 * 120.00459 * 0.02562 * 26 16 15 28 28 H 1.08005 * 119.99782 * 185.02342 * 1 2 3 29 29 H 1.07993 * 120.00115 * 5.02214 * 1 2 3 30 30 H 1.08004 * 120.00195 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.49863 * 305.45421 * 5 3 2 32 32 H 1.09005 * 109.49866 * 65.55474 * 5 3 2 33 33 H 1.09008 * 109.45990 * 181.38209 * 6 5 3 34 34 H 1.09000 * 109.46598 * 301.35570 * 6 5 3 35 35 H 1.08993 * 109.50288 * 58.58753 * 7 6 5 36 36 H 1.09007 * 109.49747 * 178.65244 * 7 6 5 37 37 H 1.08999 * 109.74392 * 295.12020 * 8 7 6 38 38 H 1.08998 * 109.66421 * 174.55507 * 8 7 6 39 39 H 0.96998 * 120.00146 * 7.48454 * 12 10 9 40 40 H 1.07998 * 120.00418 * 0.02562 * 14 13 12 41 41 H 1.08007 * 119.99562 * 180.19087 * 15 14 13 42 42 H 0.96996 * 120.00610 * 179.97438 * 21 20 18 43 43 H 1.08009 * 119.99911 * 179.97438 * 26 16 15 44 44 H 1.08003 * 120.00217 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3630 2.1314 -0.1209 5 6 3.0755 1.3172 -1.1501 6 6 3.9289 2.5843 -1.0599 7 6 4.7001 2.5890 0.2620 8 6 3.7023 2.5944 1.4301 9 7 2.7883 1.4554 1.2692 10 6 2.6137 0.5685 2.2688 11 8 1.9630 -0.4410 2.0792 12 7 3.1603 0.8006 3.4787 13 6 3.1141 -0.1882 4.4691 14 6 2.1154 -1.1533 4.4410 15 6 2.0722 -2.1301 5.4151 16 6 3.0218 -2.1427 6.4287 17 8 2.9765 -3.1009 7.3897 18 6 3.8077 -2.9534 8.4408 19 1 4.3890 -2.0494 8.5468 20 6 3.9161 -3.9621 9.3855 21 7 4.7269 -3.8180 10.4116 22 14 2.9101 -5.5254 9.2025 23 1 3.6808 -6.5207 8.4146 24 1 2.6113 -6.0820 10.5464 25 1 1.6383 -5.2162 8.5009 26 6 4.0176 -1.1748 6.4595 27 6 4.0632 -0.2003 5.4834 28 1 -0.5400 -0.9318 0.0819 29 1 -0.5400 0.9316 -0.0819 30 1 1.8501 -0.9353 -0.0004 31 1 3.7183 0.4398 -1.0784 32 1 2.5446 1.3031 -2.1020 33 1 4.6335 2.6075 -1.8914 34 1 3.2832 3.4612 -1.1066 35 1 5.3275 1.6997 0.3204 36 1 5.3259 3.4799 0.3150 37 1 3.1327 3.5237 1.4235 38 1 4.2409 2.5004 2.3730 39 1 3.5858 1.6525 3.6634 40 1 1.3748 -1.1413 3.6551 41 1 1.2975 -2.8823 5.3915 42 1 4.8026 -4.5236 11.0729 43 1 4.7558 -1.1843 7.2479 44 1 4.8373 0.5525 5.5076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321327297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:58 Heat of formation + Delta-G solvation = -3.303164 kcal Electronic energy + Delta-G solvation = -26114.831217 eV Core-core repulsion = 22419.653829 eV Total energy + Delta-G solvation = -3695.177388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.06117 -40.76293 -39.23365 -37.87353 -36.04677 -34.58171 -34.33014 -33.64050 -31.85197 -30.80120 -29.60899 -27.23786 -26.08547 -24.38209 -23.96645 -23.19547 -22.00918 -21.09556 -20.65017 -19.76002 -19.12986 -18.93287 -17.99859 -16.82232 -16.70371 -16.48341 -15.86748 -15.74979 -15.62986 -15.48468 -15.24966 -14.83442 -14.71557 -14.55528 -14.43144 -14.25754 -14.11892 -13.88303 -13.57704 -13.30194 -13.07801 -12.77540 -12.60813 -12.53608 -12.10386 -11.98064 -11.83269 -11.60398 -11.50899 -11.45882 -11.43123 -11.04510 -10.67956 -9.87456 -9.70934 -9.46667 -8.56158 -8.48296 -6.18491 0.50342 0.57450 1.20459 1.31965 1.35398 1.52807 1.86382 2.07707 2.29641 2.78099 2.85531 3.12195 3.16587 3.70080 3.84913 3.95333 4.03446 4.08276 4.17151 4.19290 4.29448 4.47658 4.50142 4.54134 4.61823 4.65233 4.77556 4.89179 4.91458 5.02739 5.06297 5.11986 5.17851 5.21606 5.24560 5.36515 5.46365 5.50540 5.53508 5.62201 5.76533 5.79119 5.91161 5.96010 6.01683 6.24867 6.86972 6.88723 7.48194 7.63170 8.63403 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.026250 B = 0.002753 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.395227 B =10166.860504 C =10945.587954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.108 4.108 3 C 0.188 3.812 4 H 0.092 0.908 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.100 3.900 9 N -0.618 5.618 10 C 0.697 3.303 11 O -0.586 6.586 12 N -0.664 5.664 13 C 0.096 3.904 14 C -0.095 4.095 15 C -0.174 4.174 16 C 0.106 3.894 17 O -0.248 6.248 18 C -0.394 4.394 19 H 0.084 0.916 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.966 3.034 23 H -0.268 1.268 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.208 4.208 27 C -0.094 4.094 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.417 0.583 40 H 0.156 0.844 41 H 0.123 0.877 42 H 0.284 0.716 43 H 0.121 0.879 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 17.975 -24.703 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.127 4.127 3 C 0.086 3.914 4 H 0.110 0.890 5 C -0.163 4.163 6 C -0.153 4.153 7 C -0.171 4.171 8 C -0.021 4.021 9 N -0.356 5.356 10 C 0.399 3.601 11 O -0.466 6.466 12 N -0.314 5.314 13 C 0.001 3.999 14 C -0.116 4.116 15 C -0.194 4.194 16 C 0.057 3.943 17 O -0.156 6.156 18 C -0.470 4.470 19 H 0.102 0.898 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.191 1.191 25 H -0.190 1.190 26 C -0.228 4.228 27 C -0.114 4.114 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.257 0.743 40 H 0.173 0.827 41 H 0.141 0.859 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.466 17.041 -24.695 30.105 hybrid contribution 0.228 -0.639 0.815 1.060 sum -2.239 16.402 -23.880 29.057 Atomic orbital electron populations 1.23567 0.95579 1.01773 1.04613 1.22589 0.96016 0.97195 0.96875 1.20386 0.92998 0.95778 0.82273 0.89020 1.21949 0.97581 0.99167 0.97617 1.21522 0.98930 0.97295 0.97588 1.21989 0.97545 1.03237 0.94287 1.22105 0.91424 0.88567 1.00037 1.47552 1.47025 1.27855 1.13121 1.16157 0.80072 0.83227 0.80608 1.90806 1.45962 1.29049 1.80760 1.42419 1.61200 1.17708 1.10028 1.17285 0.97211 0.93569 0.91834 1.21483 0.98449 0.93807 0.97814 1.20391 1.00305 1.02766 0.95906 1.19626 0.95322 0.89905 0.89454 1.83553 1.58332 1.44520 1.29167 1.20696 1.21923 1.05173 0.99252 0.89836 1.25212 0.97611 1.01595 0.94334 1.69724 1.37535 1.36211 1.12947 0.85281 0.79534 0.78268 0.78048 1.19338 1.19098 1.18966 1.21100 1.01018 0.98204 1.02430 1.20687 0.97880 0.99112 0.93758 0.89433 0.87795 0.89399 0.92985 0.89276 0.90498 0.90181 0.92890 0.88271 0.88805 0.89432 0.74263 0.82655 0.85877 0.90646 0.86152 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.72 14.24 67.78 0.96 -3.76 16 2 C -0.11 -2.45 5.71 25.64 0.15 -2.30 16 3 C 0.19 3.09 3.23 44.23 0.14 3.23 16 4 H 0.09 1.22 7.81 -2.39 -0.02 1.20 16 5 C -0.12 -1.52 5.36 30.67 0.16 -1.36 16 6 C -0.12 -0.88 5.88 30.62 0.18 -0.70 16 7 C -0.13 -1.07 6.10 30.82 0.19 -0.88 16 8 C 0.10 0.99 6.33 86.51 0.55 1.53 16 9 N -0.62 -11.03 2.97 -816.24 -2.42 -13.45 16 10 C 0.70 18.16 8.11 179.05 1.45 19.61 16 11 O -0.59 -19.46 9.59 -3.99 -0.04 -19.50 16 12 N -0.66 -16.19 5.19 -317.05 -1.64 -17.84 16 13 C 0.10 3.16 6.47 38.15 0.25 3.41 16 14 C -0.10 -3.62 8.84 22.38 0.20 -3.42 16 15 C -0.17 -7.46 9.98 22.38 0.22 -7.24 16 16 C 0.11 5.15 6.64 22.59 0.15 5.30 16 17 O -0.25 -13.85 8.58 -22.95 -0.20 -14.04 16 18 C -0.39 -23.41 9.85 67.91 0.67 -22.74 16 19 H 0.08 5.11 5.64 -2.91 -0.02 5.10 16 20 C 0.01 0.63 5.49 84.82 0.47 1.09 16 21 N -0.92 -55.45 13.96 21.61 0.30 -55.14 16 22 Si 0.97 46.56 28.62 68.60 1.96 48.52 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 26 C -0.21 -9.05 9.10 22.37 0.20 -8.84 16 27 C -0.09 -3.16 9.93 22.38 0.22 -2.94 16 28 H 0.09 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.10 1.85 7.85 -2.91 -0.02 1.83 16 30 H 0.09 2.46 7.38 -2.91 -0.02 2.44 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.72 5.85 -2.39 -0.01 0.70 16 39 H 0.42 6.93 6.49 -92.71 -0.60 6.33 16 40 H 0.16 5.91 5.36 -2.92 -0.02 5.90 16 41 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 42 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.12 5.61 5.80 -2.91 -0.02 5.59 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -72.35 353.15 4.55 -67.80 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.42 Total: 23.65 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 6.17 Total: -20.00 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -3.76 Total: -86.43 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.24 Total: -33.54 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.96 Total: 48.52 kcal Total: -72.35 4.55 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321327297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.496 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds