Wall clock time and date at job start Tue Mar 31 2020 10:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46792 * 2 1 4 4 C 1.52995 * 109.47456 * 240.00206 * 2 1 3 5 5 S 1.81400 * 109.47277 * 119.99955 * 2 1 3 6 6 C 1.81393 * 102.99933 * 60.00172 * 5 2 1 7 7 C 1.53002 * 109.47095 * 179.97438 * 6 5 2 8 8 N 1.46494 * 109.47141 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00085 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00153 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00234 * 179.97438 * 9 8 7 12 12 C 1.47020 * 125.64631 * 359.69659 * 11 9 8 13 13 C 1.54333 * 107.26560 * 178.84312 * 12 11 9 14 14 C 1.55155 * 103.02328 * 338.14323 * 13 12 11 15 15 O 1.42900 * 111.00372 * 277.23364 * 14 13 12 16 16 C 1.50691 * 111.04101 * 153.39271 * 14 13 12 17 17 H 1.08006 * 120.00250 * 272.60670 * 16 14 13 18 18 C 1.37875 * 120.00310 * 92.61191 * 16 14 13 19 19 N 1.31510 * 120.00513 * 173.52245 * 18 16 14 20 20 Si 1.86802 * 119.99732 * 353.51459 * 18 16 14 21 21 H 1.48500 * 109.46714 * 87.32636 * 20 18 16 22 22 H 1.48497 * 109.47211 * 207.32256 * 20 18 16 23 23 H 1.48501 * 109.47213 * 327.33034 * 20 18 16 24 24 C 1.47419 * 125.64756 * 179.97438 * 11 9 8 25 25 H 1.09002 * 109.47579 * 299.99748 * 1 2 3 26 26 H 1.08999 * 109.47428 * 59.99808 * 1 2 3 27 27 H 1.09004 * 109.46624 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47527 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47291 * 300.00277 * 3 2 1 30 30 H 1.09000 * 109.47566 * 60.00003 * 3 2 1 31 31 H 1.08999 * 109.46787 * 300.00191 * 4 2 1 32 32 H 1.09005 * 109.47242 * 59.99495 * 4 2 1 33 33 H 1.08996 * 109.47568 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47393 * 60.00054 * 6 5 2 35 35 H 1.08995 * 109.47315 * 299.99743 * 6 5 2 36 36 H 1.09001 * 109.46949 * 59.99791 * 7 6 5 37 37 H 1.09005 * 109.46812 * 300.00081 * 7 6 5 38 38 H 0.96998 * 120.00118 * 359.97438 * 8 7 6 39 39 H 1.09000 * 109.88227 * 298.39420 * 12 11 9 40 40 H 1.09006 * 109.88114 * 59.55800 * 12 11 9 41 41 H 1.08999 * 110.85261 * 219.67316 * 13 12 11 42 42 H 1.08999 * 110.51231 * 96.45317 * 13 12 11 43 43 H 0.96696 * 114.00153 * 168.40146 * 15 14 13 44 44 H 0.96999 * 120.00681 * 179.97438 * 19 18 16 45 45 H 1.08999 * 110.36942 * 322.93175 * 24 11 9 46 46 H 1.09005 * 110.36927 * 85.15093 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1347 -0.8551 1.4811 6 6 1.4376 -2.5203 1.3040 7 6 1.8636 -3.3809 2.4952 8 7 1.3011 -4.7259 2.3519 9 6 1.5460 -5.6622 3.2900 10 8 2.2333 -5.3904 4.2554 11 7 1.0280 -6.8996 3.1584 12 6 0.1779 -7.3593 2.0505 13 6 -0.1485 -8.8453 2.3096 14 6 0.9934 -9.2935 3.2596 15 8 2.1703 -9.6305 2.5224 16 6 0.5548 -10.4450 4.1271 17 1 0.0575 -10.2544 5.0667 18 6 0.7884 -11.7418 3.7215 19 7 0.5225 -12.7425 4.5324 20 14 1.4825 -12.0776 2.0201 21 1 2.9658 -12.0297 2.0724 22 1 1.0465 -13.4219 1.5640 23 1 0.9872 -11.0481 1.0714 24 6 1.2154 -8.0145 4.1046 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4427 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.8032 -2.9711 0.3814 35 1 0.3499 -2.4574 1.2715 36 1 1.4983 -2.9303 3.4181 37 1 2.9514 -3.4438 2.5274 38 1 0.7525 -4.9427 1.5820 39 1 -0.7419 -6.7751 2.0220 40 1 0.7130 -7.2584 1.1062 41 1 -0.1238 -9.4156 1.3810 42 1 -1.1177 -8.9438 2.7984 43 1 2.9587 -9.7446 3.0707 44 1 0.6865 -13.6549 4.2469 45 1 2.2261 -8.0000 4.5126 46 1 0.4816 -7.9572 4.9086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326281840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:21 Heat of formation + Delta-G solvation = -85.662760 kcal Electronic energy + Delta-G solvation = -24553.764288 eV Core-core repulsion = 20990.459471 eV Total energy + Delta-G solvation = -3563.304817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95151 -37.89967 -36.74504 -35.26213 -34.73402 -32.38414 -31.19309 -29.83362 -28.32574 -27.86790 -27.75727 -25.28240 -23.32397 -22.42831 -20.96433 -19.95977 -19.78264 -17.96127 -17.40838 -16.46249 -16.27228 -15.99582 -15.19250 -15.16854 -14.84338 -14.83272 -14.71056 -14.61436 -14.08856 -13.67254 -13.56242 -12.96020 -12.89948 -12.70295 -12.52143 -12.28819 -12.27491 -12.01722 -11.90021 -11.81685 -11.60713 -11.56887 -11.52805 -11.40943 -11.04827 -10.51566 -10.40189 -10.22342 -10.11667 -9.86096 -9.25001 -9.07680 -8.68567 -8.54056 -8.03921 -8.00576 -6.20241 -4.32397 1.15736 2.12855 2.97969 3.44713 3.48026 3.50953 3.67594 4.22242 4.22707 4.25508 4.43285 4.48540 4.54881 4.58955 4.99973 5.01791 5.03833 5.10844 5.12299 5.23058 5.29203 5.30603 5.31449 5.31824 5.53064 5.56592 5.58373 5.65298 5.70407 5.72584 5.76717 5.85385 6.07423 6.46933 6.48668 6.51907 6.62899 6.70203 7.03342 7.27895 7.46533 8.11415 8.23471 8.60968 8.80622 8.84848 9.41073 10.88542 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.002400 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.827197 B =11665.115425 C =11999.654845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.128 4.128 4 C -0.145 4.145 5 S -0.230 6.230 6 C -0.104 4.104 7 C 0.158 3.842 8 N -0.748 5.748 9 C 0.720 3.280 10 O -0.595 6.595 11 N -0.628 5.628 12 C 0.101 3.899 13 C -0.120 4.120 14 C 0.219 3.781 15 O -0.559 6.559 16 C -0.552 4.552 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.887 5.887 20 Si 0.952 3.048 21 H -0.293 1.293 22 H -0.327 1.327 23 H -0.270 1.270 24 C 0.108 3.892 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.394 0.606 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.372 0.628 44 H 0.267 0.733 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 24.455 -12.742 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.186 4.186 4 C -0.204 4.204 5 S -0.003 6.003 6 C -0.253 4.253 7 C 0.033 3.967 8 N -0.406 5.406 9 C 0.422 3.578 10 O -0.474 6.474 11 N -0.365 5.365 12 C -0.022 4.022 13 C -0.158 4.158 14 C 0.179 3.821 15 O -0.367 6.367 16 C -0.589 4.589 17 H 0.100 0.900 18 C -0.131 4.131 19 N -0.522 5.522 20 Si 0.788 3.212 21 H -0.221 1.221 22 H -0.258 1.258 23 H -0.196 1.196 24 C -0.015 4.015 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.228 0.772 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.220 0.780 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.235 24.992 -11.617 27.561 hybrid contribution -0.413 -0.919 -1.736 2.007 sum -0.178 24.073 -13.352 27.528 Atomic orbital electron populations 1.22146 0.92658 1.02554 1.03028 1.22713 0.98416 0.98484 0.94973 1.21656 1.01890 0.92320 1.02777 1.22147 1.02236 1.00088 0.95936 1.86929 1.70483 1.09546 1.33334 1.23586 1.03805 0.95513 1.02411 1.20688 0.99226 0.80471 0.96321 1.45032 1.57724 1.11256 1.26590 1.15405 0.80220 0.79524 0.82642 1.90905 1.44053 1.79988 1.32436 1.47706 1.52772 1.09770 1.26215 1.22057 0.93050 0.97528 0.89586 1.22949 1.00012 0.91417 1.01411 1.20247 0.82583 0.91182 0.88097 1.86101 1.20263 1.90423 1.39941 1.21099 1.41702 0.89137 1.06983 0.90026 1.25118 0.93810 0.95758 0.98412 1.69965 1.46539 0.99473 1.36224 0.85633 0.78448 0.73811 0.83341 1.22073 1.25832 1.19629 1.23002 1.01684 0.84719 0.92055 0.91237 0.91625 0.92395 0.91569 0.91079 0.91577 0.92385 0.91629 0.91226 0.89366 0.89375 0.90815 0.90826 0.77189 0.92767 0.92527 0.90178 0.89603 0.78020 0.92391 0.91160 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.32 37.16 0.31 -0.53 16 2 C -0.04 -0.24 0.95 -90.62 -0.09 -0.32 16 3 C -0.13 -0.72 8.48 37.16 0.32 -0.41 16 4 C -0.15 -0.86 8.32 37.16 0.31 -0.55 16 5 S -0.23 -2.09 20.65 -107.50 -2.22 -4.31 16 6 C -0.10 -0.89 5.17 37.16 0.19 -0.70 16 7 C 0.16 1.86 5.68 -4.04 -0.02 1.84 16 8 N -0.75 -9.92 5.52 -65.22 -0.36 -10.28 16 9 C 0.72 13.00 8.49 -86.91 -0.74 12.27 16 10 O -0.60 -12.99 16.60 5.28 0.09 -12.90 16 11 N -0.63 -11.32 3.33 -176.24 -0.59 -11.91 16 12 C 0.10 1.57 6.15 -3.06 -0.02 1.56 16 13 C -0.12 -2.25 5.90 -24.89 -0.15 -2.40 16 14 C 0.22 4.75 0.70 -89.63 -0.06 4.69 16 15 O -0.56 -12.05 8.52 -35.23 -0.30 -12.35 16 16 C -0.55 -14.37 8.89 -34.45 -0.31 -14.68 16 17 H 0.08 2.31 8.00 -52.48 -0.42 1.89 16 18 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 19 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 20 Si 0.95 23.06 24.93 -169.99 -4.24 18.82 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.33 -8.14 7.11 56.52 0.40 -7.74 16 23 H -0.27 -6.35 5.42 56.52 0.31 -6.04 16 24 C 0.11 2.20 6.07 -2.54 -0.02 2.18 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 6.68 -51.93 -0.35 0.00 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 6.68 -51.93 -0.35 0.01 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.68 7.00 -51.92 -0.36 0.32 16 35 H 0.09 0.66 6.99 -51.93 -0.36 0.30 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.39 4.22 7.46 -40.82 -0.30 3.92 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.54 6.65 -51.93 -0.35 1.20 16 42 H 0.09 1.58 8.03 -51.93 -0.42 1.17 16 43 H 0.37 7.24 8.98 45.56 0.41 7.65 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 46 H 0.07 1.46 7.99 -51.93 -0.41 1.04 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -32.32 372.05 -8.81 -41.14 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.21 Total: 6.54 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.37 Total: 4.88 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.17 Total: -47.43 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.21 Total: -25.25 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.24 Total: 18.82 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -2.22 Total: -4.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.32 -8.81 -41.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326281840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.525 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds