Wall clock time and date at job start Tue Mar 31 2020 11:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 N 1.46905 * 109.46963 * 119.99759 * 2 1 3 5 5 C 1.46901 * 110.99973 * 96.74313 * 4 2 1 6 6 C 1.53002 * 109.44913 * 54.52973 * 5 4 2 7 7 O 1.42910 * 109.46735 * 53.84065 * 6 5 4 8 8 C 1.53036 * 109.45929 * 294.56605 * 5 4 2 9 9 C 1.53186 * 109.31381 * 301.34177 * 8 5 4 10 10 N 1.46924 * 108.77825 * 305.36444 * 9 8 5 11 11 C 1.34773 * 120.63660 * 233.62931 * 10 9 8 12 12 O 1.21284 * 120.00003 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00416 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47416 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00034 * 180.02562 * 14 13 11 16 16 H 1.07992 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99600 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00441 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99700 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47305 * 90.00368 * 19 17 15 21 21 H 1.48495 * 109.47446 * 210.00449 * 19 17 15 22 22 H 1.48503 * 109.47401 * 330.00691 * 19 17 15 23 23 C 1.46924 * 118.73600 * 53.60925 * 10 9 8 24 24 C 1.53041 * 109.46058 * 174.49501 * 5 4 2 25 25 H 1.08996 * 109.47335 * 301.82474 * 1 2 3 26 26 H 1.09000 * 109.46730 * 61.82394 * 1 2 3 27 27 H 1.08993 * 109.47131 * 181.81880 * 1 2 3 28 28 H 1.08997 * 109.47290 * 239.99553 * 2 1 3 29 29 H 1.08999 * 109.47176 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46979 * 299.99430 * 3 2 1 31 31 H 1.08997 * 109.47394 * 59.99616 * 3 2 1 32 32 H 1.00898 * 110.99919 * 220.70190 * 4 2 1 33 33 H 1.08993 * 109.47159 * 173.83915 * 6 5 4 34 34 H 1.09000 * 109.46958 * 293.84460 * 6 5 4 35 35 H 0.96698 * 113.99670 * 184.99809 * 7 6 5 36 36 H 1.09004 * 109.49896 * 181.38933 * 8 5 4 37 37 H 1.09000 * 109.50246 * 61.30138 * 8 5 4 38 38 H 1.08998 * 109.58863 * 65.15599 * 9 8 5 39 39 H 1.09006 * 109.58550 * 185.43708 * 9 8 5 40 40 H 1.09000 * 109.46760 * 300.00413 * 13 11 10 41 41 H 1.08996 * 109.46627 * 59.99870 * 13 11 10 42 42 H 0.97005 * 120.00614 * 179.97438 * 18 17 15 43 43 H 1.09009 * 109.58995 * 66.17585 * 23 10 9 44 44 H 1.08997 * 109.58803 * 186.60198 * 23 10 9 45 45 H 1.08992 * 109.49939 * 298.70721 * 24 5 4 46 46 H 1.08993 * 109.49750 * 178.60678 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.3469 -2.0933 0.9020 6 6 3.3333 -2.1489 -0.2664 7 8 4.4650 -1.3268 0.0262 8 6 1.0689 -2.8468 0.5265 9 6 0.0705 -2.7596 1.6851 10 7 0.7216 -3.2480 2.9083 11 6 0.1544 -4.2229 3.6459 12 8 -0.9039 -4.7055 3.3022 13 6 0.8344 -4.7127 4.8984 14 16 -0.1670 -6.0145 5.6590 15 6 0.8333 -6.3909 7.0598 16 1 1.7591 -5.8588 7.2209 17 6 0.4313 -7.3714 7.9562 18 7 -0.6968 -8.0204 7.7596 19 14 1.4922 -7.7710 9.4410 20 1 1.0889 -6.9119 10.5831 21 1 1.3126 -9.1987 9.8079 22 1 2.9185 -7.5200 9.1123 23 6 2.0032 -2.6537 3.3118 24 6 2.9801 -2.7420 2.1350 25 1 -0.3634 0.5419 0.8731 26 1 -0.3633 0.4853 -0.9059 27 1 -0.3633 -1.0271 0.0326 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.8135 -0.2119 1.5957 33 1 3.6606 -3.1776 -0.4169 34 1 2.8454 -1.7868 -1.1713 35 1 5.0966 -1.2534 -0.7024 36 1 1.3073 -3.8920 0.3296 37 1 0.6311 -2.3989 -0.3656 38 1 -0.2383 -1.7236 1.8242 39 1 -0.8018 -3.3742 1.4626 40 1 1.8170 -5.1113 4.6461 41 1 0.9469 -3.8847 5.5982 42 1 -0.9776 -8.7059 8.3859 43 1 1.8521 -1.6089 3.5836 44 1 2.4073 -3.2002 4.1639 45 1 3.9025 -2.2193 2.3879 46 1 3.2005 -3.7881 1.9230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339455822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:20 Heat of formation + Delta-G solvation = -80.757839 kcal Electronic energy + Delta-G solvation = -25538.231061 eV Core-core repulsion = 21975.138937 eV Total energy + Delta-G solvation = -3563.092124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56643 -38.74546 -36.46935 -35.79708 -33.06954 -32.38825 -31.68526 -29.39386 -28.87197 -27.41432 -26.89073 -25.43653 -23.53212 -22.95940 -21.06939 -19.94585 -18.62972 -17.70407 -17.62501 -16.62778 -16.14279 -15.90805 -15.39938 -15.25577 -15.06807 -14.76764 -14.33097 -13.90357 -13.79917 -13.70474 -13.39384 -12.91555 -12.86327 -12.74024 -12.58076 -12.46568 -12.15190 -12.12995 -11.79947 -11.58468 -11.48388 -11.20651 -11.03250 -11.00127 -10.97184 -10.75493 -10.69758 -10.57666 -10.22048 -9.75078 -9.21668 -9.02752 -8.69888 -8.22117 -8.16276 -6.44725 -6.17522 -3.87422 3.06539 3.17981 3.25111 3.30111 3.34017 3.62117 3.69990 4.04688 4.24416 4.39929 4.54469 4.69821 4.77574 4.84664 4.96214 5.06294 5.09894 5.12734 5.17456 5.20116 5.32943 5.36374 5.41404 5.47698 5.58158 5.63838 5.65268 5.68925 5.71674 5.76509 5.85921 5.90865 5.95426 6.00616 6.04957 6.16964 6.20260 6.25056 6.83402 6.88832 7.14301 7.26448 7.63495 7.75273 8.39376 8.70445 9.27698 10.89908 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.002892 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.704970 B = 9679.277423 C =10199.871155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 C -0.156 4.156 4 N -0.663 5.663 5 C 0.123 3.877 6 C 0.045 3.955 7 O -0.569 6.569 8 C -0.124 4.124 9 C 0.123 3.877 10 N -0.614 5.614 11 C 0.533 3.467 12 O -0.522 6.522 13 C -0.149 4.149 14 S -0.063 6.063 15 C -0.533 4.533 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.118 3.882 24 C -0.121 4.121 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.348 0.652 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.378 0.622 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.877 17.751 -18.921 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 C -0.214 4.214 4 N -0.296 5.296 5 C 0.031 3.969 6 C -0.035 4.035 7 O -0.374 6.374 8 C -0.162 4.162 9 C 0.000 4.000 10 N -0.349 5.349 11 C 0.321 3.679 12 O -0.397 6.397 13 C -0.300 4.300 14 S 0.164 5.836 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.006 4.006 24 C -0.159 4.159 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.230 16.809 -18.544 26.052 hybrid contribution 3.173 0.351 0.167 3.196 sum 10.402 17.160 -18.377 27.210 Atomic orbital electron populations 1.22120 0.94822 1.02660 1.01309 1.21567 0.95764 0.93824 0.92289 1.22032 1.00894 0.96186 1.02274 1.60719 1.39366 1.01181 1.28309 1.20946 0.92657 0.89961 0.93314 1.22989 0.87614 0.94210 0.98688 1.86415 1.35233 1.71631 1.44082 1.22023 0.95113 1.00050 0.99032 1.21443 0.95077 1.00443 0.83002 1.48016 1.22895 1.38335 1.25696 1.20301 0.85054 0.78138 0.84389 1.90677 1.22116 1.56303 1.70627 1.23541 1.04230 1.04931 0.97278 1.85384 1.29692 1.40883 1.27648 1.22864 1.09663 1.25060 1.10590 0.90987 1.24986 0.95478 0.95096 0.98044 1.70020 1.20797 1.23108 1.36427 0.86179 0.80115 0.77700 0.81567 1.20284 1.20800 1.19707 1.21592 0.83036 0.99355 0.96600 1.21939 0.98525 1.00985 0.94472 0.92095 0.93190 0.91583 0.93118 0.92619 0.92388 0.91963 0.83179 0.93244 0.93272 0.77520 0.91225 0.90612 0.90258 0.89624 0.89451 0.89349 0.92237 0.90592 0.89813 0.90188 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.26 37.16 0.31 -0.87 16 2 C 0.07 0.55 2.50 -67.71 -0.17 0.38 16 3 C -0.16 -1.02 9.07 37.16 0.34 -0.68 16 4 N -0.66 -5.53 4.46 -93.00 -0.41 -5.94 16 5 C 0.12 1.08 0.37 -131.56 -0.05 1.03 16 6 C 0.04 0.32 5.38 37.16 0.20 0.52 16 7 O -0.57 -3.91 12.63 -35.23 -0.44 -4.35 16 8 C -0.12 -1.23 4.29 -26.62 -0.11 -1.35 16 9 C 0.12 1.58 5.51 -3.71 -0.02 1.56 16 10 N -0.61 -9.16 2.97 -172.77 -0.51 -9.67 16 11 C 0.53 10.56 7.72 -10.99 -0.08 10.48 16 12 O -0.52 -12.32 15.28 5.55 0.08 -12.24 16 13 C -0.15 -3.14 4.50 36.01 0.16 -2.98 16 14 S -0.06 -1.74 20.57 -107.50 -2.21 -3.96 16 15 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 16 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 19 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.12 1.41 6.08 -3.71 -0.02 1.39 16 24 C -0.12 -1.21 4.88 -26.61 -0.13 -1.34 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.56 4.17 -51.93 -0.22 0.34 16 28 H 0.05 0.37 5.13 -51.93 -0.27 0.11 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.35 2.98 7.67 -39.29 -0.30 2.68 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.33 6.07 -51.93 -0.32 0.01 16 35 H 0.38 1.20 9.12 45.56 0.42 1.61 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.65 5.77 -51.93 -0.30 0.35 16 38 H 0.08 0.98 5.97 -51.93 -0.31 0.67 16 39 H 0.09 1.27 7.01 -51.93 -0.36 0.91 16 40 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 41 H 0.09 1.74 7.94 -51.92 -0.41 1.33 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.08 0.86 7.74 -51.92 -0.40 0.46 16 44 H 0.08 1.03 5.93 -51.93 -0.31 0.73 16 45 H 0.08 0.75 7.82 -51.93 -0.41 0.35 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -34.38 362.85 -8.22 -42.60 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.51 Total: 2.18 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 0.61 Total: -4.94 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.19 Total: -41.38 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.36 Total: -16.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.38 -8.22 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339455822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.156 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds