Wall clock time and date at job start Tue Mar 31 2020 11:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 N 1.46905 * 109.46963 * 119.99759 * 2 1 3 5 5 C 1.46901 * 110.99973 * 96.74313 * 4 2 1 6 6 C 1.53002 * 109.44913 * 54.52973 * 5 4 2 7 7 O 1.42910 * 109.46735 * 53.84065 * 6 5 4 8 8 C 1.53036 * 109.45929 * 294.56605 * 5 4 2 9 9 C 1.53186 * 109.31381 * 301.34177 * 8 5 4 10 10 N 1.46924 * 108.77825 * 305.36444 * 9 8 5 11 11 C 1.34773 * 120.63660 * 233.62931 * 10 9 8 12 12 O 1.21284 * 120.00003 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00416 * 180.02562 * 11 10 9 14 14 S 1.80995 * 109.47416 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00034 * 180.02562 * 14 13 11 16 16 H 1.07992 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99600 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00441 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99700 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47305 * 90.00368 * 19 17 15 21 21 H 1.48495 * 109.47446 * 210.00449 * 19 17 15 22 22 H 1.48503 * 109.47401 * 330.00691 * 19 17 15 23 23 C 1.46924 * 118.73600 * 53.60925 * 10 9 8 24 24 C 1.53041 * 109.46058 * 174.49501 * 5 4 2 25 25 H 1.08996 * 109.47335 * 301.82474 * 1 2 3 26 26 H 1.09000 * 109.46730 * 61.82394 * 1 2 3 27 27 H 1.08993 * 109.47131 * 181.81880 * 1 2 3 28 28 H 1.08997 * 109.47290 * 239.99553 * 2 1 3 29 29 H 1.08999 * 109.47176 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46979 * 299.99430 * 3 2 1 31 31 H 1.08997 * 109.47394 * 59.99616 * 3 2 1 32 32 H 1.00898 * 110.99919 * 220.70190 * 4 2 1 33 33 H 1.08993 * 109.47159 * 173.83915 * 6 5 4 34 34 H 1.09000 * 109.46958 * 293.84460 * 6 5 4 35 35 H 0.96698 * 113.99670 * 184.99809 * 7 6 5 36 36 H 1.09004 * 109.49896 * 181.38933 * 8 5 4 37 37 H 1.09000 * 109.50246 * 61.30138 * 8 5 4 38 38 H 1.08998 * 109.58863 * 65.15599 * 9 8 5 39 39 H 1.09006 * 109.58550 * 185.43708 * 9 8 5 40 40 H 1.09000 * 109.46760 * 300.00413 * 13 11 10 41 41 H 1.08996 * 109.46627 * 59.99870 * 13 11 10 42 42 H 0.97005 * 120.00614 * 179.97438 * 18 17 15 43 43 H 1.09009 * 109.58995 * 66.17585 * 23 10 9 44 44 H 1.08997 * 109.58803 * 186.60198 * 23 10 9 45 45 H 1.08992 * 109.49939 * 298.70721 * 24 5 4 46 46 H 1.08993 * 109.49750 * 178.60678 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.3469 -2.0933 0.9020 6 6 3.3333 -2.1489 -0.2664 7 8 4.4650 -1.3268 0.0262 8 6 1.0689 -2.8468 0.5265 9 6 0.0705 -2.7596 1.6851 10 7 0.7216 -3.2480 2.9083 11 6 0.1544 -4.2229 3.6459 12 8 -0.9039 -4.7055 3.3022 13 6 0.8344 -4.7127 4.8984 14 16 -0.1670 -6.0145 5.6590 15 6 0.8333 -6.3909 7.0598 16 1 1.7591 -5.8588 7.2209 17 6 0.4313 -7.3714 7.9562 18 7 -0.6968 -8.0204 7.7596 19 14 1.4922 -7.7710 9.4410 20 1 1.0889 -6.9119 10.5831 21 1 1.3126 -9.1987 9.8079 22 1 2.9185 -7.5200 9.1123 23 6 2.0032 -2.6537 3.3118 24 6 2.9801 -2.7420 2.1350 25 1 -0.3634 0.5419 0.8731 26 1 -0.3633 0.4853 -0.9059 27 1 -0.3633 -1.0271 0.0326 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.8135 -0.2119 1.5957 33 1 3.6606 -3.1776 -0.4169 34 1 2.8454 -1.7868 -1.1713 35 1 5.0966 -1.2534 -0.7024 36 1 1.3073 -3.8920 0.3296 37 1 0.6311 -2.3989 -0.3656 38 1 -0.2383 -1.7236 1.8242 39 1 -0.8018 -3.3742 1.4626 40 1 1.8170 -5.1113 4.6461 41 1 0.9469 -3.8847 5.5982 42 1 -0.9776 -8.7059 8.3859 43 1 1.8521 -1.6089 3.5836 44 1 2.4073 -3.2002 4.1639 45 1 3.9025 -2.2193 2.3879 46 1 3.2005 -3.7881 1.9230 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339455822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:19 Heat of formation + Delta-G solvation = -106.817211 kcal Electronic energy + Delta-G solvation = -25539.361080 eV Core-core repulsion = 21975.138937 eV Total energy + Delta-G solvation = -3564.222143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54958 -39.96731 -37.25706 -36.63926 -34.58091 -34.01054 -32.71894 -30.67774 -29.83657 -28.05732 -27.79533 -27.51054 -24.47879 -23.97612 -21.79297 -21.03400 -19.91027 -19.30782 -18.26619 -18.05484 -16.97818 -16.90653 -16.86497 -16.52547 -16.39948 -15.91813 -15.71318 -15.06214 -14.83823 -14.67570 -14.43018 -14.26726 -13.99668 -13.73669 -13.57099 -13.29790 -13.17187 -13.09521 -13.08164 -12.88412 -12.79139 -12.59463 -12.33990 -12.14173 -12.06587 -11.70887 -11.65376 -11.57043 -11.34407 -11.13640 -10.83367 -10.75573 -10.25154 -9.70625 -9.12074 -8.66528 -8.33772 -6.12188 1.27036 1.43128 1.47011 1.57761 1.61417 2.16992 2.28542 3.00145 3.03213 3.27061 3.42060 3.65192 3.70821 3.88749 4.09661 4.12409 4.21286 4.26801 4.27377 4.32678 4.44300 4.45595 4.48892 4.54474 4.61632 4.66163 4.76619 4.85180 4.88206 4.89267 5.02064 5.04142 5.07205 5.13769 5.16413 5.34526 5.37724 5.42276 5.51702 5.68103 6.20579 6.24672 6.38518 6.60925 6.85234 7.07167 7.19502 8.75590 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.002892 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.704970 B = 9679.277423 C =10199.871155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.150 4.150 4 N -0.668 5.668 5 C 0.125 3.875 6 C 0.052 3.948 7 O -0.578 6.578 8 C -0.116 4.116 9 C 0.123 3.877 10 N -0.599 5.599 11 C 0.530 3.470 12 O -0.570 6.570 13 C -0.122 4.122 14 S -0.152 6.152 15 C -0.545 4.545 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.257 1.257 23 C 0.112 3.888 24 C -0.114 4.114 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.350 0.650 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.533 19.488 -19.464 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 C -0.208 4.208 4 N -0.301 5.301 5 C 0.033 3.967 6 C -0.028 4.028 7 O -0.386 6.386 8 C -0.154 4.154 9 C 0.001 3.999 10 N -0.332 5.332 11 C 0.318 3.682 12 O -0.450 6.450 13 C -0.273 4.273 14 S 0.075 5.925 15 C -0.693 4.693 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.181 1.181 23 C -0.010 4.010 24 C -0.152 4.152 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.170 0.830 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.936 18.599 -19.127 28.469 hybrid contribution 2.365 -0.054 0.225 2.376 sum 12.301 18.545 -18.902 29.198 Atomic orbital electron populations 1.22108 0.95310 1.02004 1.01411 1.21576 0.95255 0.94365 0.92042 1.21967 1.00983 0.95466 1.02351 1.60688 1.39490 1.00911 1.29009 1.20834 0.92304 0.90011 0.93514 1.22799 0.87577 0.94421 0.97967 1.86366 1.35442 1.71378 1.45400 1.21945 0.95097 1.00132 0.98251 1.21565 0.95191 1.00077 0.83105 1.48035 1.23452 1.36406 1.25330 1.20123 0.84603 0.79077 0.84439 1.90660 1.24166 1.58399 1.71746 1.23354 1.03374 1.02793 0.97776 1.85568 1.33099 1.44607 1.29217 1.23186 1.09887 1.25511 1.10683 0.89980 1.26141 0.96870 0.94644 1.01521 1.70187 1.22899 1.23842 1.37910 0.84941 0.78467 0.77579 0.76908 1.19285 1.20259 1.18129 1.21838 0.81886 0.99628 0.97628 1.21876 0.98366 1.00941 0.94030 0.93168 0.92061 0.92467 0.92503 0.92344 0.91600 0.92615 0.82986 0.93335 0.92176 0.75489 0.91998 0.88793 0.89305 0.92051 0.87710 0.87754 0.91989 0.89316 0.90036 0.88883 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.26 71.98 0.59 -1.48 16 2 C 0.08 0.93 2.50 44.91 0.11 1.05 16 3 C -0.15 -1.57 9.07 71.98 0.65 -0.92 16 4 N -0.67 -9.50 4.46 -448.15 -2.00 -11.50 16 5 C 0.13 1.91 0.37 3.55 0.00 1.91 16 6 C 0.05 0.60 5.38 71.98 0.39 0.99 16 7 O -0.58 -6.05 12.63 -148.98 -1.88 -7.93 16 8 C -0.12 -2.14 4.29 30.67 0.13 -2.01 16 9 C 0.12 3.11 5.51 86.36 0.48 3.59 16 10 N -0.60 -17.57 2.97 -818.90 -2.43 -20.00 16 11 C 0.53 21.32 7.72 87.66 0.68 22.00 16 12 O -0.57 -28.06 15.28 -3.04 -0.05 -28.11 16 13 C -0.12 -5.15 4.50 71.24 0.32 -4.82 16 14 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 15 C -0.54 -31.72 9.50 67.95 0.65 -31.07 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.74 5.49 84.86 0.47 1.21 16 18 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 19 Si 1.00 44.13 29.55 68.60 2.03 46.16 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 C 0.11 2.49 6.08 86.36 0.53 3.02 16 24 C -0.11 -2.02 4.88 30.67 0.15 -1.87 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.88 4.17 -2.39 -0.01 0.87 16 28 H 0.06 0.65 5.13 -2.39 -0.01 0.64 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.35 4.98 7.67 -89.70 -0.69 4.29 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.59 6.07 -2.39 -0.01 0.57 16 35 H 0.40 1.18 9.12 -74.06 -0.68 0.50 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.42 5.77 -2.39 -0.01 1.41 16 38 H 0.09 2.11 5.97 -2.39 -0.01 2.10 16 39 H 0.06 1.88 7.01 -2.38 -0.02 1.87 16 40 H 0.10 4.03 7.69 -2.40 -0.02 4.01 16 41 H 0.10 4.04 7.94 -2.40 -0.02 4.02 16 42 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 43 H 0.09 1.81 7.74 -2.38 -0.02 1.79 16 44 H 0.08 1.86 5.93 -2.39 -0.01 1.85 16 45 H 0.09 1.48 7.82 -2.39 -0.02 1.46 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -76.61 362.85 -0.43 -77.04 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.36 Total: 19.20 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.14 Total: -8.41 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -4.15 Total: -88.06 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.93 Total: -36.04 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -76.61 -0.43 -77.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339455822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.782 kcal (2) G-P(sol) polarization free energy of solvation -76.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds