Wall clock time and date at job start Tue Mar 31 2020 11:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47161 * 2 1 4 4 N 1.46501 * 109.46891 * 120.00439 * 2 1 3 5 5 C 1.46497 * 119.99904 * 119.60607 * 4 2 1 6 6 C 1.50700 * 109.47062 * 263.92385 * 5 4 2 7 7 H 1.08001 * 120.00217 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00193 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00218 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00051 * 0.02562 * 8 6 5 11 11 H 1.48494 * 109.47473 * 89.99288 * 10 8 6 12 12 H 1.48499 * 109.47249 * 209.99910 * 10 8 6 13 13 H 1.48504 * 109.46745 * 329.99648 * 10 8 6 14 14 C 1.34769 * 119.99871 * 299.60129 * 4 2 1 15 15 O 1.21285 * 120.00254 * 3.85579 * 14 4 2 16 16 C 1.50701 * 120.00020 * 183.86272 * 14 4 2 17 17 H 1.09001 * 109.46180 * 308.82228 * 16 14 4 18 18 C 1.52905 * 109.46385 * 68.80528 * 16 14 4 19 19 C 1.50498 * 109.90432 * 71.42251 * 18 16 14 20 20 O 1.21286 * 119.61479 * 215.16668 * 19 18 16 21 21 N 1.34570 * 120.76800 * 35.43414 * 19 18 16 22 22 C 1.39828 * 120.44083 * 358.70997 * 21 19 18 23 23 C 1.38866 * 120.12401 * 161.72428 * 22 21 19 24 24 C 1.38104 * 119.89445 * 180.25678 * 23 22 21 25 25 C 1.38300 * 120.09043 * 359.97438 * 24 23 22 26 26 C 1.38282 * 120.15084 * 0.02562 * 25 24 23 27 27 C 1.38094 * 120.02032 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47042 * 306.81634 * 1 2 3 29 29 H 1.08998 * 109.47234 * 66.82189 * 1 2 3 30 30 H 1.09000 * 109.47310 * 186.81724 * 1 2 3 31 31 H 1.09001 * 109.46645 * 239.99982 * 2 1 3 32 32 H 1.09001 * 109.46796 * 182.82765 * 3 2 1 33 33 H 1.08995 * 109.47248 * 302.82723 * 3 2 1 34 34 H 1.09004 * 109.47033 * 62.83120 * 3 2 1 35 35 H 1.09000 * 109.47398 * 23.92577 * 5 4 2 36 36 H 1.09003 * 109.47288 * 143.93056 * 5 4 2 37 37 H 0.97001 * 120.00335 * 179.97438 * 9 8 6 38 38 H 1.08999 * 109.40104 * 311.29032 * 18 16 14 39 39 H 1.09003 * 109.40216 * 191.55228 * 18 16 14 40 40 H 0.96995 * 119.77861 * 178.95612 * 21 19 18 41 41 H 1.08005 * 120.04899 * 0.23414 * 23 22 21 42 42 H 1.08001 * 119.95632 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.92739 * 179.97438 * 25 24 23 44 44 H 1.07998 * 119.99192 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8534 -1.8868 1.0617 6 6 1.9900 -3.1171 1.1708 7 1 0.9255 -3.0180 1.3245 8 6 2.5586 -4.3693 1.0734 9 7 1.8051 -5.4430 1.1681 10 14 4.3996 -4.5410 0.8068 11 1 5.0865 -4.6037 2.1218 12 1 4.6755 -5.7850 0.0443 13 1 4.9002 -3.3704 0.0422 14 6 1.6993 -0.2257 2.4202 15 8 0.9514 0.7224 2.5328 16 6 2.2721 -0.8836 3.6490 17 1 2.1008 -1.9589 3.5985 18 6 3.7748 -0.6097 3.7201 19 6 4.0165 0.8342 4.0686 20 8 4.9655 1.4162 3.5873 21 7 3.1950 1.4856 4.9122 22 6 2.0837 0.8377 5.4604 23 6 1.4647 1.3526 6.5918 24 6 0.3706 0.7059 7.1323 25 6 -0.1087 -0.4523 6.5481 26 6 0.5056 -0.9675 5.4214 27 6 1.5999 -0.3253 4.8764 28 1 -0.3633 0.6158 0.8227 29 1 -0.3633 0.4045 -0.9447 30 1 -0.3634 -1.0204 0.1220 31 1 1.8933 -0.5139 -0.8900 32 1 3.1288 1.4428 -0.0507 33 1 1.6359 1.9707 -0.8635 34 1 1.7187 1.9414 0.9143 35 1 3.3498 -1.8762 0.0913 36 1 3.6028 -1.8976 1.8531 37 1 2.2051 -6.3240 1.0992 38 1 4.2290 -0.8299 2.7540 39 1 4.2231 -1.2462 4.4830 40 1 3.3729 2.4118 5.1388 41 1 1.8385 2.2572 7.0485 42 1 -0.1118 1.1057 8.0120 43 1 -0.9642 -0.9562 6.9733 44 1 0.1289 -1.8720 4.9670 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361954438.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:00 Heat of formation + Delta-G solvation = -41.810878 kcal Electronic energy + Delta-G solvation = -28031.275979 eV Core-core repulsion = 24334.428771 eV Total energy + Delta-G solvation = -3696.847208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21379 -39.19689 -38.50635 -35.55917 -35.06923 -34.25966 -32.85699 -31.51020 -29.90135 -29.28065 -27.66991 -26.67210 -25.27268 -23.04006 -22.59046 -22.53432 -21.48363 -19.56153 -18.07664 -17.81296 -17.14614 -16.92566 -16.25947 -15.81827 -15.54744 -15.11107 -14.57852 -14.41001 -14.28712 -14.00083 -13.74483 -13.58176 -13.19648 -13.07640 -12.83638 -12.60010 -12.57156 -12.15756 -12.02898 -11.94574 -11.62834 -11.44848 -11.15484 -11.00679 -10.97933 -10.80820 -10.69917 -10.57390 -10.33965 -10.24689 -9.88430 -9.64764 -9.02107 -8.78188 -8.62739 -7.91419 -7.78483 -6.28103 -4.30279 1.30985 1.43773 2.65406 3.12052 3.13181 3.21827 3.23272 3.24324 3.65674 3.99670 4.20939 4.47837 4.70623 4.83713 4.99762 5.01270 5.06659 5.15792 5.38316 5.46187 5.50547 5.58660 5.64783 5.68018 5.77491 5.88534 6.03612 6.04467 6.08419 6.14576 6.22638 6.29436 6.42150 6.47373 6.48419 6.57935 6.63560 6.67401 6.82041 6.85235 6.95117 7.26425 7.36373 7.38278 8.06795 8.08868 8.34416 8.76382 8.88181 9.31134 10.83986 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.005698 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.287058 B = 4912.687639 C = 5277.774557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 C -0.166 4.166 4 N -0.585 5.585 5 C 0.198 3.802 6 C -0.542 4.542 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.888 5.888 10 Si 0.865 3.135 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.528 3.472 15 O -0.550 6.550 16 C -0.071 4.071 17 H 0.139 0.861 18 C -0.140 4.140 19 C 0.526 3.474 20 O -0.531 6.531 21 N -0.659 5.659 22 C 0.173 3.827 23 C -0.158 4.158 24 C -0.093 4.093 25 C -0.143 4.143 26 C -0.070 4.070 27 C -0.087 4.087 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.267 0.733 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.407 0.593 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 9.816 8.352 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 C -0.225 4.225 4 N -0.316 5.316 5 C 0.077 3.923 6 C -0.580 4.580 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.525 5.525 10 Si 0.691 3.309 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.316 3.684 15 O -0.429 6.429 16 C -0.092 4.092 17 H 0.156 0.844 18 C -0.179 4.179 19 C 0.314 3.686 20 O -0.407 6.407 21 N -0.303 5.303 22 C 0.077 3.923 23 C -0.179 4.179 24 C -0.111 4.111 25 C -0.162 4.162 26 C -0.089 4.089 27 C -0.090 4.090 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.245 0.755 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.065 10.225 7.998 12.982 hybrid contribution 0.962 -0.111 -0.160 0.982 sum 1.027 10.115 7.838 12.837 Atomic orbital electron populations 1.22155 0.95259 1.02917 1.01765 1.20877 0.94614 0.92195 0.87752 1.22192 1.00551 0.96855 1.02854 1.47979 1.50949 1.28246 1.04396 1.20085 0.91036 0.83396 0.97797 1.21363 0.96455 0.88575 1.51605 0.90199 1.24860 0.97762 0.95677 0.94212 1.69880 1.35656 0.98084 1.48848 0.87020 0.86067 0.78538 0.79290 1.19619 1.20787 1.18756 1.19980 0.81025 0.83243 0.84201 1.90571 1.36779 1.28954 1.86598 1.20287 0.93087 1.04548 0.91266 0.84371 1.21958 0.96776 0.92611 1.06582 1.20751 0.81126 0.89834 0.76845 1.90742 1.29668 1.68903 1.51422 1.43522 1.25304 1.15535 1.45899 1.17559 0.88373 0.93081 0.93293 1.20649 0.99118 1.02060 0.96076 1.20877 0.95562 0.95262 0.99436 1.21048 1.00940 0.97106 0.97097 1.20952 0.93444 0.99484 0.94975 1.19048 0.97790 0.95721 0.96415 0.90868 0.93068 0.92065 0.89878 0.93206 0.92411 0.90916 0.94579 0.94887 0.92283 0.85950 0.86901 0.75530 0.85873 0.85865 0.85856 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.01 37.16 0.33 -2.54 16 2 C 0.15 2.69 3.28 -67.93 -0.22 2.47 16 3 C -0.17 -2.75 9.15 37.16 0.34 -2.41 16 4 N -0.59 -11.58 2.42 -167.47 -0.41 -11.99 16 5 C 0.20 4.17 3.72 -5.20 -0.02 4.15 16 6 C -0.54 -13.42 9.17 -34.44 -0.32 -13.74 16 7 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 8 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.89 -24.64 13.96 55.43 0.77 -23.87 16 10 Si 0.86 18.98 27.47 -169.99 -4.67 14.32 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 14 C 0.53 10.32 5.94 -10.99 -0.07 10.25 16 15 O -0.55 -11.46 12.33 5.55 0.07 -11.39 16 16 C -0.07 -1.22 1.95 -92.99 -0.18 -1.40 16 17 H 0.14 2.51 7.04 -51.93 -0.37 2.15 16 18 C -0.14 -2.24 5.03 -28.03 -0.14 -2.38 16 19 C 0.53 8.78 7.37 -11.18 -0.08 8.70 16 20 O -0.53 -10.24 17.91 5.55 0.10 -10.14 16 21 N -0.66 -9.49 5.36 -10.01 -0.05 -9.55 16 22 C 0.17 2.48 6.48 -83.75 -0.54 1.94 16 23 C -0.16 -1.88 9.92 -39.40 -0.39 -2.27 16 24 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 25 C -0.14 -1.73 10.04 -39.54 -0.40 -2.12 16 26 C -0.07 -1.01 9.69 -39.62 -0.38 -1.40 16 27 C -0.09 -1.37 4.18 -104.47 -0.44 -1.80 16 28 H 0.07 1.38 6.30 -51.93 -0.33 1.06 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.34 6.20 -51.93 -0.32 1.02 16 35 H 0.04 0.77 6.85 -51.93 -0.36 0.41 16 36 H 0.03 0.67 3.83 -51.93 -0.20 0.47 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.12 2.07 5.46 -51.93 -0.28 1.79 16 39 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.41 4.99 8.83 -40.82 -0.36 4.63 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.36 352.18 -7.89 -38.25 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.01 Total: 11.11 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.00 Total: -2.04 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.31 Total: -45.40 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.17 Total: -21.53 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.36 -7.89 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361954438.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.564 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds