Wall clock time and date at job start Tue Mar 31 2020 11:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47140 * 2 1 4 4 H 1.09001 * 109.46812 * 54.99771 * 3 2 1 5 5 C 1.50703 * 109.47304 * 175.00079 * 3 2 1 6 6 H 1.07994 * 119.99399 * 120.00023 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46716 * 120.00463 * 9 7 5 12 12 H 1.48500 * 109.46999 * 240.00161 * 9 7 5 13 13 N 1.46506 * 109.46831 * 295.00216 * 3 2 1 14 14 C 1.34774 * 120.00251 * 84.99772 * 13 3 2 15 15 O 1.21282 * 119.99905 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99967 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47588 * 39.99671 * 16 14 13 18 18 N 1.46895 * 109.47120 * 160.00227 * 16 14 13 19 19 C 1.53005 * 109.47092 * 279.99778 * 16 14 13 20 20 C 1.50695 * 109.47261 * 174.99914 * 19 16 14 21 21 C 1.33996 * 124.92411 * 90.00150 * 20 19 16 22 22 C 1.46773 * 106.19153 * 179.97438 * 21 20 19 23 23 C 1.39403 * 134.37544 * 179.97438 * 22 21 20 24 24 C 1.36742 * 119.71935 * 179.97438 * 23 22 21 25 25 C 1.38747 * 120.41388 * 0.08125 * 24 23 22 26 26 C 1.37846 * 120.68929 * 359.93653 * 25 24 23 27 27 C 1.38950 * 119.81398 * 0.02562 * 26 25 24 28 28 O 1.34451 * 124.92621 * 269.69819 * 20 19 16 29 29 H 1.08998 * 109.46677 * 299.99780 * 1 2 3 30 30 H 1.09000 * 109.46863 * 60.00110 * 1 2 3 31 31 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47359 * 240.00028 * 2 1 3 33 33 H 1.09000 * 109.47312 * 119.99601 * 2 1 3 34 34 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 35 35 H 0.97006 * 119.99584 * 264.99701 * 13 3 2 36 36 H 1.00905 * 111.00167 * 296.04345 * 18 16 14 37 37 H 1.00899 * 111.00205 * 60.00055 * 18 16 14 38 38 H 1.08994 * 109.47217 * 295.00540 * 19 16 14 39 39 H 1.09002 * 109.46778 * 55.00018 * 19 16 14 40 40 H 1.08002 * 126.90476 * 359.96365 * 21 20 19 41 41 H 1.08005 * 120.14421 * 359.97438 * 23 22 21 42 42 H 1.08001 * 119.79259 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.65199 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.09129 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0051 0.8802 1.3811 10 1 6.5988 1.5453 0.1936 11 1 6.4000 1.6159 2.6091 12 1 6.4962 -0.5188 1.4626 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0362 3.3375 -2.6549 17 1 0.3957 2.7491 -3.4991 18 7 -1.4276 3.4429 -2.7194 19 6 0.6511 4.7375 -2.7104 20 6 0.3551 5.3635 -4.0488 21 6 -0.7249 6.1064 -4.3262 22 6 -0.5989 6.5023 -5.7339 23 6 -1.3766 7.2622 -6.6063 24 6 -0.9636 7.4469 -7.8967 25 6 0.2226 6.8817 -8.3423 26 6 1.0045 6.1270 -7.4943 27 6 0.6034 5.9277 -6.1789 28 8 1.1394 5.2623 -5.1363 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0616 2.9495 35 1 2.2719 2.1232 -1.9978 36 1 -1.8549 2.5293 -2.7494 37 1 -1.7855 3.9844 -1.9470 38 1 0.2244 5.3534 -1.9188 39 1 1.7301 4.6660 -2.5734 40 1 -1.5271 6.3624 -3.6499 41 1 -2.3014 7.7032 -6.2645 42 1 -1.5650 8.0358 -8.5735 43 1 0.5368 7.0352 -9.3642 44 1 1.9262 5.6919 -7.8512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577041551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:23 Heat of formation + Delta-G solvation = -39.364745 kcal Electronic energy + Delta-G solvation = -25845.936428 eV Core-core repulsion = 22149.195292 eV Total energy + Delta-G solvation = -3696.741136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.36713 -40.96818 -38.77966 -37.32364 -36.16414 -34.30877 -33.63631 -32.76175 -31.59195 -31.24928 -29.29526 -28.37748 -25.69991 -24.58421 -23.75239 -22.61724 -22.03317 -21.63518 -21.04313 -19.07526 -18.24754 -17.83024 -17.63162 -17.39212 -17.19048 -16.78147 -16.38426 -16.01233 -15.83845 -15.30131 -14.92844 -14.81795 -14.58809 -14.50060 -13.95132 -13.91200 -13.63944 -13.33875 -13.23184 -13.19480 -13.00873 -12.91250 -12.75280 -12.66724 -12.45468 -12.17707 -12.07883 -11.77693 -11.61263 -11.16964 -11.04784 -10.92299 -10.56377 -9.75024 -9.65395 -9.51440 -9.00128 -8.17668 -6.34672 0.02273 0.46627 1.40176 1.42124 1.44358 1.55232 1.69269 1.88384 2.34779 2.62988 2.84520 3.11965 3.38936 3.50745 3.79896 3.92099 4.00313 4.06455 4.15810 4.25071 4.38953 4.42427 4.46753 4.54374 4.54909 4.62877 4.73434 4.76632 4.89614 5.02798 5.04008 5.23623 5.32824 5.41168 5.41843 5.54173 5.57192 5.58247 5.60710 5.77168 5.84309 5.87941 5.98908 6.15809 6.29953 6.40512 6.73975 6.94817 7.32026 7.52541 8.87418 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002800 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.306432 B = 9997.527873 C =11014.732231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.471 3.529 15 O -0.582 6.582 16 C 0.094 3.906 17 H 0.110 0.890 18 N -0.808 5.808 19 C -0.027 4.027 20 C 0.041 3.959 21 C -0.186 4.186 22 C -0.151 4.151 23 C -0.084 4.084 24 C -0.137 4.137 25 C -0.093 4.093 26 C -0.123 4.123 27 C 0.020 3.980 28 O -0.212 6.212 29 H 0.026 0.974 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.348 0.652 37 H 0.350 0.650 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 12.242 -19.938 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.350 5.350 14 C 0.256 3.744 15 O -0.463 6.463 16 C -0.023 4.023 17 H 0.128 0.872 18 N -0.337 5.337 19 C -0.065 4.065 20 C -0.006 4.006 21 C -0.205 4.205 22 C -0.152 4.152 23 C -0.102 4.102 24 C -0.155 4.155 25 C -0.111 4.111 26 C -0.141 4.141 27 C -0.027 4.027 28 O -0.114 6.114 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.186 0.814 41 H 0.160 0.840 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.579 12.358 -19.810 24.548 hybrid contribution 1.138 -0.873 1.477 2.059 sum -6.441 11.485 -18.334 22.572 Atomic orbital electron populations 1.21656 0.96834 0.99106 1.00235 1.21792 0.93882 0.99293 1.01187 1.18364 0.93542 0.89138 0.81578 0.98197 1.21614 0.91588 1.38717 1.06533 0.91142 1.25735 1.03082 0.94460 0.95124 1.70047 1.36896 1.38443 1.09907 0.85375 0.79468 0.77782 0.78200 1.18511 1.21034 1.20566 1.46406 1.15677 1.55447 1.17427 1.22261 0.82003 0.79068 0.91110 1.90670 1.52256 1.61462 1.41942 1.21412 0.91318 0.95859 0.93680 0.87213 1.59218 1.01656 1.22003 1.50813 1.20101 1.02894 0.93892 0.89581 1.21962 0.91155 0.99721 0.87769 1.22336 1.00213 1.03380 0.94597 1.20307 0.96900 1.02801 0.95152 1.20629 0.99459 0.96879 0.93205 1.21190 0.97448 1.01144 0.95693 1.21348 0.93976 0.95414 1.00372 1.20324 1.02692 1.02827 0.88273 1.20120 0.94700 0.97559 0.90276 1.83902 1.46569 1.62793 1.18180 0.95509 0.93616 0.93766 0.94263 0.91140 0.92650 0.76324 0.83887 0.83650 0.87374 0.88535 0.81444 0.83969 0.82466 0.81759 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.74 16 3 C 0.28 13.75 2.24 44.25 0.10 13.85 16 4 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 5 C -0.55 -28.30 8.73 25.60 0.22 -28.07 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.86 5.29 84.65 0.45 1.30 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.45 16 9 Si 0.97 41.75 29.54 68.60 2.03 43.77 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.70 -27.18 5.02 -446.08 -2.24 -29.42 16 14 C 0.47 16.68 5.63 87.66 0.49 17.17 16 15 O -0.58 -24.76 13.39 -3.04 -0.04 -24.81 16 16 C 0.09 2.44 3.14 44.17 0.14 2.58 16 17 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 18 N -0.81 -19.23 8.56 -171.81 -1.47 -20.70 16 19 C -0.03 -0.65 5.35 29.85 0.16 -0.49 16 20 C 0.04 1.04 6.25 24.72 0.15 1.19 16 21 C -0.19 -4.44 10.84 23.54 0.26 -4.18 16 22 C -0.15 -3.61 6.40 -20.22 -0.13 -3.74 16 23 C -0.08 -1.53 10.05 22.20 0.22 -1.30 16 24 C -0.14 -1.93 9.98 22.04 0.22 -1.71 16 25 C -0.09 -1.33 10.01 22.30 0.22 -1.11 16 26 C -0.12 -2.39 10.07 22.35 0.23 -2.17 16 27 C 0.02 0.52 7.42 22.99 0.17 0.69 16 28 O -0.21 -5.90 10.58 -8.89 -0.09 -5.99 16 29 H 0.03 1.25 7.85 -2.39 -0.02 1.23 16 30 H 0.04 1.87 5.65 -2.39 -0.01 1.85 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 3.84 5.95 -2.39 -0.01 3.83 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 35 H 0.40 13.50 8.54 -92.70 -0.79 12.71 16 36 H 0.35 8.16 9.06 -89.69 -0.81 7.35 16 37 H 0.35 8.40 8.58 -89.69 -0.77 7.63 16 38 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.10 2.31 8.14 -2.39 -0.02 2.30 16 40 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 41 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -66.34 365.32 0.78 -65.56 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -1.33 Total: 39.41 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.68 Total: -16.37 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -3.47 Total: -101.57 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.13 Total: -30.80 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.34 0.78 -65.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577041551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.195 kcal (2) G-P(sol) polarization free energy of solvation -66.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds