Wall clock time and date at job start Tue Mar 31 2020 11:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47035 * 2 1 4 4 H 1.08993 * 109.47713 * 305.00351 * 3 2 1 5 5 C 1.50705 * 109.46936 * 184.99964 * 3 2 1 6 6 H 1.08005 * 119.99893 * 240.00325 * 5 3 2 7 7 C 1.37870 * 119.99850 * 60.00768 * 5 3 2 8 8 N 1.31517 * 120.00032 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00107 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46822 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46872 * 119.99737 * 9 7 5 12 12 H 1.48492 * 109.47530 * 240.00090 * 9 7 5 13 13 N 1.46504 * 109.46555 * 65.00558 * 3 2 1 14 14 C 1.34777 * 120.00056 * 274.99619 * 13 3 2 15 15 O 1.21284 * 119.99703 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00295 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47263 * 39.99814 * 16 14 13 18 18 N 1.46896 * 109.47186 * 160.00073 * 16 14 13 19 19 C 1.52997 * 109.46942 * 279.99753 * 16 14 13 20 20 C 1.50706 * 109.47238 * 174.99721 * 19 16 14 21 21 C 1.33996 * 124.92030 * 90.00023 * 20 19 16 22 22 C 1.46785 * 106.18491 * 179.97438 * 21 20 19 23 23 C 1.39404 * 134.37154 * 180.02562 * 22 21 20 24 24 C 1.36729 * 119.71815 * 179.97438 * 23 22 21 25 25 C 1.38753 * 120.41642 * 0.08158 * 24 23 22 26 26 C 1.37838 * 120.68355 * 359.93584 * 25 24 23 27 27 C 1.38945 * 119.81975 * 0.02562 * 26 25 24 28 28 O 1.34448 * 124.92490 * 269.70048 * 20 19 16 29 29 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47106 * 299.99760 * 1 2 3 31 31 H 1.09000 * 109.47322 * 59.99411 * 1 2 3 32 32 H 1.09005 * 109.47100 * 240.01027 * 2 1 3 33 33 H 1.08992 * 109.47085 * 120.00446 * 2 1 3 34 34 H 0.97002 * 119.99881 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00216 * 94.99817 * 13 3 2 36 36 H 1.00900 * 111.00679 * 59.99995 * 18 16 14 37 37 H 1.00909 * 111.00087 * 183.95643 * 18 16 14 38 38 H 1.09001 * 109.46832 * 55.00035 * 19 16 14 39 39 H 1.09000 * 109.47611 * 295.00332 * 19 16 14 40 40 H 1.08002 * 126.90815 * 359.96603 * 21 20 19 41 41 H 1.08003 * 120.13875 * 359.97438 * 23 22 21 42 42 H 1.08002 * 119.79472 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.65124 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.09052 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9817 -0.8417 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8889 0.6524 7 6 4.1433 0.8786 -1.2280 8 7 3.4061 0.3369 -2.1729 9 14 6.0049 0.8814 -1.3819 10 1 6.5987 1.5462 -0.1942 11 1 6.4969 -0.5174 -1.4632 12 1 6.3990 1.6169 -2.6102 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4343 16 6 0.0367 3.3384 2.6547 17 1 0.8864 3.8932 3.0525 18 7 -1.0758 4.2631 2.3995 19 6 -0.4019 2.2807 3.6696 20 6 -0.6829 2.9418 4.9945 21 6 -1.8731 3.4279 5.3721 22 6 -1.6830 3.9728 6.7217 23 6 -2.5159 4.6033 7.6447 24 6 -2.0118 5.0007 8.8519 25 6 -0.6773 4.7817 9.1623 26 6 0.1614 4.1602 8.2622 27 6 -0.3310 3.7478 7.0301 28 8 0.2230 3.1241 5.9711 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8292 -0.0608 -2.9500 35 1 2.2720 2.1230 1.9979 36 1 -1.8763 3.7725 2.0299 37 1 -1.3191 4.7752 3.2342 38 1 0.3918 1.5438 3.7923 39 1 -1.3048 1.7860 3.3116 40 1 -2.7883 3.4203 4.7986 41 1 -3.5551 4.7772 7.4072 42 1 -2.6561 5.4890 9.5681 43 1 -0.2919 5.1011 10.1194 44 1 1.1985 3.9942 8.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577041553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:27 Heat of formation + Delta-G solvation = -37.277693 kcal Electronic energy + Delta-G solvation = -25921.070208 eV Core-core repulsion = 22224.419573 eV Total energy + Delta-G solvation = -3696.650635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.51384 -40.88029 -38.86355 -37.35117 -36.34841 -34.27928 -33.67239 -32.72195 -31.52759 -31.26881 -29.39438 -28.39326 -25.79205 -24.62532 -23.84697 -22.70846 -22.07888 -21.66722 -20.99562 -19.13362 -18.35268 -18.05077 -17.71635 -17.29659 -17.12416 -16.57274 -16.18894 -15.95068 -15.91006 -15.21740 -14.99497 -14.79291 -14.65451 -14.56796 -14.31063 -14.05224 -13.64863 -13.43787 -13.31498 -13.19466 -13.14868 -12.87649 -12.82547 -12.69933 -12.52550 -12.13320 -12.03679 -11.84870 -11.56875 -11.12088 -11.02790 -10.67547 -10.50539 -9.83403 -9.60297 -9.56062 -9.12259 -8.15718 -6.32444 -0.08392 0.39582 1.26019 1.43293 1.44984 1.56264 1.60674 1.89054 2.35004 2.57815 2.77727 3.13759 3.30138 3.59879 3.70517 3.83517 3.89959 4.03425 4.06146 4.17479 4.28011 4.35292 4.45728 4.52001 4.54848 4.59827 4.69043 4.77232 4.78669 4.94374 5.08537 5.23561 5.28720 5.34553 5.45886 5.46186 5.52226 5.58076 5.63808 5.75397 5.81455 5.92752 6.04800 6.18946 6.19308 6.50231 6.76127 7.00814 7.34631 7.59445 8.89601 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.002734 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.639817 B =10238.478899 C =11031.698064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.705 5.705 14 C 0.509 3.491 15 O -0.571 6.571 16 C 0.095 3.905 17 H 0.107 0.893 18 N -0.830 5.830 19 C -0.069 4.069 20 C 0.031 3.969 21 C -0.202 4.202 22 C -0.150 4.150 23 C -0.081 4.081 24 C -0.136 4.136 25 C -0.090 4.090 26 C -0.123 4.123 27 C 0.022 3.978 28 O -0.208 6.208 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.353 0.647 37 H 0.355 0.645 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.176 0.824 41 H 0.146 0.854 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 7.066 23.930 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.354 5.354 14 C 0.294 3.706 15 O -0.450 6.450 16 C -0.021 4.021 17 H 0.125 0.875 18 N -0.363 5.363 19 C -0.108 4.108 20 C -0.017 4.017 21 C -0.221 4.221 22 C -0.151 4.151 23 C -0.099 4.099 24 C -0.153 4.153 25 C -0.108 4.108 26 C -0.142 4.142 27 C -0.025 4.025 28 O -0.111 6.111 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.193 0.807 41 H 0.164 0.836 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.055 7.231 22.542 25.720 hybrid contribution 0.707 -0.763 0.228 1.065 sum -9.348 6.468 22.770 25.450 Atomic orbital electron populations 1.21679 0.96749 0.99173 1.00419 1.21776 0.93966 0.98973 1.01281 1.18359 0.93486 0.89249 0.81333 0.98432 1.21616 0.91620 1.38675 1.06583 0.91262 1.25737 1.03123 0.94481 0.95100 1.70051 1.36876 1.38466 1.09857 0.85365 0.79428 0.77809 0.78143 1.18591 1.20418 1.21087 1.46272 1.15557 1.56037 1.17529 1.20686 0.82000 0.78280 0.89589 1.90654 1.52471 1.60038 1.41851 1.21202 0.97300 0.93056 0.90572 0.87530 1.58446 1.11385 1.30109 1.36397 1.20960 1.05556 0.97757 0.86543 1.22159 0.87915 1.01290 0.90299 1.22525 0.98936 1.05244 0.95407 1.20236 0.94244 1.04384 0.96190 1.20647 1.00120 0.96402 0.92707 1.21221 0.96158 1.00912 0.97038 1.21380 0.93334 0.96514 0.99535 1.20342 1.02073 1.02162 0.89595 1.20139 0.92779 0.99351 0.90240 1.83935 1.39325 1.64822 1.23003 0.93628 0.93297 0.95628 0.91195 0.93972 0.92644 0.76412 0.83196 0.82870 0.88346 0.86916 0.80661 0.83638 0.82363 0.81729 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.52 71.98 0.61 -4.71 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.28 14.14 2.24 44.25 0.10 14.24 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.70 -28.31 5.02 -446.08 -2.24 -30.55 16 14 C 0.51 19.14 5.65 87.66 0.49 19.64 16 15 O -0.57 -25.88 13.39 -3.04 -0.04 -25.92 16 16 C 0.09 2.57 3.20 44.17 0.14 2.71 16 17 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 18 N -0.83 -21.20 8.93 -171.82 -1.53 -22.73 16 19 C -0.07 -1.54 5.35 29.85 0.16 -1.38 16 20 C 0.03 0.69 6.01 24.72 0.15 0.84 16 21 C -0.20 -3.99 9.94 23.54 0.23 -3.76 16 22 C -0.15 -3.10 6.40 -20.21 -0.13 -3.23 16 23 C -0.08 -1.24 10.05 22.20 0.22 -1.02 16 24 C -0.14 -1.62 9.98 22.04 0.22 -1.40 16 25 C -0.09 -1.11 10.01 22.30 0.22 -0.89 16 26 C -0.12 -2.17 10.07 22.34 0.23 -1.94 16 27 C 0.02 0.50 7.42 22.99 0.17 0.67 16 28 O -0.21 -5.32 10.58 -8.91 -0.09 -5.41 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.97 5.65 -2.38 -0.01 1.96 16 31 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 32 H 0.07 3.82 5.95 -2.38 -0.01 3.81 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.40 13.89 8.54 -92.71 -0.79 13.10 16 36 H 0.35 8.86 8.58 -89.69 -0.77 8.09 16 37 H 0.36 7.47 7.47 -89.69 -0.67 6.80 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 43 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 44 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -68.99 363.02 0.84 -68.15 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -1.18 Total: 37.43 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 3.66 Total: -13.28 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.53 Total: -105.30 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.13 Total: -31.33 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -68.99 0.84 -68.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577041553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.872 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds