Wall clock time and date at job start Tue Mar 31 2020 11:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47339 * 2 1 4 4 H 1.08998 * 109.47187 * 304.99741 * 3 2 1 5 5 C 1.50706 * 109.47467 * 185.00276 * 3 2 1 6 6 H 1.08004 * 119.99630 * 240.00202 * 5 3 2 7 7 C 1.37872 * 120.00244 * 59.99164 * 5 3 2 8 8 N 1.31517 * 119.99756 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00113 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46895 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46870 * 120.00307 * 9 7 5 12 12 H 1.48500 * 109.47276 * 240.00163 * 9 7 5 13 13 N 1.46494 * 109.47623 * 64.99837 * 3 2 1 14 14 C 1.34783 * 120.00057 * 275.00766 * 13 3 2 15 15 O 1.21586 * 119.99744 * 359.97438 * 14 13 3 16 16 C 1.47524 * 120.00106 * 179.97438 * 14 13 3 17 17 C 1.39690 * 120.19685 * 0.02562 * 16 14 13 18 18 C 1.37794 * 119.91967 * 180.25731 * 17 16 14 19 19 C 1.38571 * 120.32947 * 359.43766 * 18 17 16 20 20 C 1.38017 * 120.40187 * 0.55747 * 19 18 17 21 21 C 1.38850 * 120.07378 * 359.72906 * 20 19 18 22 22 N 1.39286 * 120.16647 * 180.02562 * 21 20 19 23 23 C 1.46765 * 124.34816 * 89.97844 * 22 21 20 24 24 C 1.54486 * 105.47068 * 197.01362 * 23 22 21 25 25 C 1.54629 * 101.76576 * 334.58549 * 24 23 22 26 26 C 1.34421 * 124.34829 * 269.67706 * 22 21 20 27 27 O 1.21271 * 124.94391 * 359.56768 * 26 22 21 28 28 H 1.08994 * 109.47129 * 59.99954 * 1 2 3 29 29 H 1.09002 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46646 * 300.00240 * 1 2 3 31 31 H 1.08999 * 109.47314 * 239.99450 * 2 1 3 32 32 H 1.09001 * 109.47107 * 119.99652 * 2 1 3 33 33 H 0.97005 * 120.00152 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00282 * 94.99685 * 13 3 2 35 35 H 1.08002 * 120.03803 * 359.97139 * 17 16 14 36 36 H 1.07998 * 119.83991 * 179.69748 * 18 17 16 37 37 H 1.08001 * 119.79996 * 180.31085 * 19 18 17 38 38 H 1.08009 * 119.96473 * 179.69872 * 20 19 18 39 39 H 1.08998 * 110.24700 * 316.00977 * 23 22 21 40 40 H 1.09001 * 110.24939 * 78.01763 * 23 22 21 41 41 H 1.09002 * 110.96628 * 92.70335 * 24 23 22 42 42 H 1.08997 * 110.96926 * 216.46246 * 24 23 22 43 43 H 1.08993 * 110.48506 * 143.47810 * 25 24 23 44 44 H 1.08998 * 110.48024 * 265.98291 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8799 -1.3811 10 1 6.5988 1.5442 -0.1931 11 1 6.4962 -0.5192 -1.4626 12 1 6.4000 1.6155 -2.6092 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6325 0.4317 16 6 0.0447 3.3236 2.6276 17 6 0.9337 3.3631 3.7044 18 6 0.5610 3.9757 4.8811 19 6 -0.6881 4.5639 4.9987 20 6 -1.5769 4.5329 3.9433 21 6 -1.2211 3.9150 2.7519 22 7 -2.1164 3.8830 1.6854 23 6 -2.1990 4.9122 0.6424 24 6 -3.5678 4.6976 -0.0409 25 6 -3.8270 3.1986 0.2363 26 6 -3.0118 2.9025 1.4760 27 8 -3.1482 1.9244 2.1797 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8293 -0.0614 -2.9498 34 1 2.2720 2.1232 1.9977 35 1 1.9101 2.9101 3.6163 36 1 1.2475 4.0013 5.7144 37 1 -0.9694 5.0461 5.9233 38 1 -2.5506 4.9894 4.0444 39 1 -2.1517 5.9057 1.0882 40 1 -1.3927 4.7832 -0.0797 41 1 -4.3358 5.3182 0.4208 42 1 -3.5038 4.8909 -1.1117 43 1 -4.8865 3.0227 0.4220 44 1 -3.4811 2.5908 -0.5997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645681530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:20 Heat of formation + Delta-G solvation = -35.586413 kcal Electronic energy + Delta-G solvation = -27465.247405 eV Core-core repulsion = 23768.670109 eV Total energy + Delta-G solvation = -3696.577295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82292 -39.16521 -37.95479 -36.15004 -35.02172 -33.04861 -32.48161 -31.53033 -30.28040 -29.06247 -27.40640 -26.94436 -23.98256 -23.00640 -22.78534 -21.72108 -20.55506 -19.51008 -19.32209 -17.88282 -17.06966 -16.54229 -15.98469 -15.65398 -15.16939 -14.97980 -14.65737 -14.50455 -14.41246 -14.04602 -13.52266 -13.48800 -13.09247 -12.82247 -12.68020 -12.64799 -12.57342 -11.89936 -11.85223 -11.52021 -11.44619 -11.39744 -11.24517 -10.96778 -10.94530 -10.83356 -10.30674 -10.15999 -9.72069 -9.60447 -9.17817 -9.02820 -8.97275 -8.73881 -8.56479 -8.47451 -7.80374 -6.13626 -4.23037 0.93737 1.23279 2.86261 3.15269 3.22273 3.27512 3.30416 3.32791 4.02863 4.10053 4.36380 4.53535 4.62603 4.81723 4.85633 4.88946 5.04600 5.17330 5.17999 5.35143 5.42793 5.50287 5.61752 5.66966 5.77212 5.84759 5.86824 6.10148 6.17733 6.36117 6.41080 6.44547 6.52044 6.59050 6.71798 7.03819 7.10417 7.22803 7.29442 7.38296 7.45244 7.62306 7.73563 7.89643 8.17866 8.46328 8.65047 8.76571 9.11037 9.44388 10.91667 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014947 B = 0.004458 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.778458 B = 6278.897148 C = 7299.386960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.123 4.123 21 C 0.196 3.804 22 N -0.565 5.565 23 C 0.111 3.889 24 C -0.127 4.127 25 C -0.148 4.148 26 C 0.537 3.463 27 O -0.532 6.532 28 H 0.047 0.953 29 H 0.021 0.979 30 H 0.039 0.961 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 11.159 9.583 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.328 3.672 15 O -0.413 6.413 16 C -0.124 4.124 17 C -0.103 4.103 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.142 4.142 21 C 0.104 3.896 22 N -0.295 5.295 23 C -0.010 4.010 24 C -0.165 4.165 25 C -0.188 4.188 26 C 0.327 3.673 27 O -0.407 6.407 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.638 10.489 9.081 17.483 hybrid contribution 1.504 -0.084 0.256 1.528 sum -9.134 10.405 9.337 16.700 Atomic orbital electron populations 1.21805 0.98138 0.98074 1.01170 1.21930 0.92710 0.99712 1.02189 1.18790 0.94177 0.89173 0.80734 0.93260 1.21258 0.90681 1.38991 1.06274 0.92108 1.24876 0.98577 0.94777 0.95384 1.69910 1.35019 1.37615 1.09343 0.86410 0.84903 0.77795 0.78093 1.19755 1.20869 1.20887 1.46469 1.14312 1.55563 1.18586 1.17926 0.83034 0.79614 0.86659 1.90701 1.51118 1.59748 1.39771 1.20756 0.94737 1.00771 0.96107 1.21365 0.99107 0.97611 0.92258 1.21132 0.96794 0.98481 0.97680 1.21129 0.93618 0.98738 0.98219 1.21276 1.00124 1.00355 0.92443 1.17260 0.88138 0.96656 0.87516 1.45068 1.34764 1.24900 1.24747 1.22105 0.98669 0.90261 0.89994 1.22546 0.96345 0.95567 1.02040 1.22241 1.00966 0.97836 0.97795 1.20749 0.79802 0.81172 0.85601 1.90697 1.70033 1.28276 1.51723 0.93371 0.95975 0.94154 0.88317 0.95138 0.92625 0.78062 0.84956 0.85284 0.85406 0.85520 0.91017 0.89793 0.90393 0.89093 0.88532 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.86 2.24 -69.09 -0.15 6.70 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.70 -14.84 4.97 -55.98 -0.28 -15.11 16 14 C 0.54 11.17 6.33 -12.47 -0.08 11.09 16 15 O -0.53 -12.02 10.33 5.29 0.05 -11.97 16 16 C -0.12 -2.04 5.89 -104.81 -0.62 -2.65 16 17 C -0.08 -1.16 9.53 -39.20 -0.37 -1.53 16 18 C -0.12 -1.36 10.02 -39.62 -0.40 -1.76 16 19 C -0.10 -1.05 10.03 -39.54 -0.40 -1.44 16 20 C -0.12 -1.55 9.96 -39.44 -0.39 -1.95 16 21 C 0.20 3.12 5.37 -83.49 -0.45 2.67 16 22 N -0.56 -8.86 1.55 -112.05 -0.17 -9.04 16 23 C 0.11 1.37 6.88 -3.12 -0.02 1.35 16 24 C -0.13 -1.22 7.18 -25.10 -0.18 -1.40 16 25 C -0.15 -1.87 6.86 -26.74 -0.18 -2.05 16 26 C 0.54 9.32 7.06 -10.86 -0.08 9.24 16 27 O -0.53 -11.42 17.70 5.57 0.10 -11.32 16 28 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.98 5.64 -51.93 -0.29 0.68 16 31 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.39 7.19 6.57 -40.82 -0.27 6.92 16 35 H 0.13 1.64 6.40 -52.49 -0.34 1.31 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.22 7.31 -51.93 -0.38 0.84 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -33.22 356.55 -9.02 -42.24 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.16 Total: 8.82 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.54 Total: -0.50 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.17 Total: -48.10 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.15 Total: -23.28 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.22 -9.02 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645681530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.651 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds