Wall clock time and date at job start Tue Mar 31 2020 11:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.33993 * 124.91689 * 89.72299 * 10 9 7 12 12 C 1.46784 * 106.17912 * 179.89753 * 11 10 9 13 13 C 1.39415 * 134.37107 * 180.11589 * 12 11 10 14 14 C 1.36732 * 119.71865 * 180.26396 * 13 12 11 15 15 C 1.38742 * 120.41565 * 0.02562 * 14 13 12 16 16 C 1.37848 * 120.68907 * 359.97438 * 15 14 13 17 17 C 1.38945 * 119.81364 * 359.97438 * 16 15 14 18 18 O 1.34446 * 124.92246 * 270.02377 * 10 9 7 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.36937 * 119.99934 * 274.99832 * 19 3 2 21 21 H 1.07998 * 120.00035 * 0.02562 * 20 19 3 22 22 C 1.38810 * 120.00229 * 180.02562 * 20 19 3 23 23 N 1.31614 * 120.00215 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99755 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 89.99844 * 24 22 20 26 26 H 1.48504 * 109.47093 * 210.00291 * 24 22 20 27 27 H 1.48497 * 109.47085 * 329.99855 * 24 22 20 28 28 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 30 30 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 32 32 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 33 33 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 34 34 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 1.07994 * 126.91412 * 0.02562 * 11 10 9 39 39 H 1.08003 * 120.13771 * 0.28612 * 13 12 11 40 40 H 1.07999 * 119.79233 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.65259 * 179.97438 * 15 14 13 42 42 H 1.07996 * 120.09166 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 44 44 H 0.97001 * 120.00086 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 6 7.4014 4.4748 -0.0701 11 6 8.0797 4.6012 -1.2187 12 6 9.5024 4.5509 -0.8611 13 6 10.6925 4.6273 -1.5834 14 6 11.8896 4.5384 -0.9287 15 6 11.9265 4.3723 0.4482 16 6 10.7603 4.2946 1.1790 17 6 9.5332 4.3838 0.5334 18 8 8.2551 4.3435 0.9602 19 7 1.6524 2.0974 1.2519 20 6 0.4155 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0484 3.2944 2.5548 23 7 -1.1405 3.8476 2.6673 24 14 1.2419 3.3450 3.9909 25 1 2.0768 4.5695 3.8978 26 1 0.4813 3.3601 5.2663 27 1 2.1163 2.1454 3.9504 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8499 1.0378 -1.0960 34 1 3.9953 0.8312 0.6659 35 1 3.4409 3.5484 0.1316 36 1 5.4717 5.0895 -0.7424 37 1 5.6107 4.8774 1.0193 38 1 7.6635 4.7188 -2.2082 39 1 10.6689 4.7566 -2.6554 40 1 12.8122 4.5970 -1.4870 41 1 12.8790 4.3031 0.9528 42 1 10.8003 4.1648 2.2504 43 1 2.2718 2.1232 1.9979 44 1 -1.3972 4.2812 3.4962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753481671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:47 Heat of formation + Delta-G solvation = -1.789500 kcal Electronic energy + Delta-G solvation = -25413.520834 eV Core-core repulsion = 21718.409083 eV Total energy + Delta-G solvation = -3695.111751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.59417 -39.57533 -38.03971 -36.93187 -33.88277 -33.45309 -32.41286 -31.60247 -30.58588 -30.31345 -28.60452 -27.12721 -23.74951 -23.11603 -22.52952 -21.97100 -21.29411 -20.40440 -19.93859 -17.88899 -17.51649 -17.04713 -17.02679 -16.06159 -15.90266 -15.62813 -15.19758 -14.94693 -14.32113 -14.17222 -13.89612 -13.62618 -13.28946 -13.27461 -13.17960 -12.91483 -12.74287 -12.55558 -12.43259 -12.25481 -11.87897 -11.58174 -11.20349 -11.11132 -11.02186 -10.78959 -10.43564 -10.33447 -10.29888 -10.07855 -9.81327 -9.54150 -9.03377 -8.86023 -8.78825 -8.29149 -7.40085 -5.86456 -3.22871 0.72224 1.19030 2.15182 2.51389 2.69492 3.29021 3.34665 3.39160 3.43213 3.54790 4.13743 4.48454 4.50012 4.71960 4.82228 4.89384 4.94924 5.01640 5.06125 5.15006 5.24323 5.25368 5.28302 5.41000 5.54406 5.67520 5.72107 5.84586 5.86697 5.99468 6.04559 6.06116 6.22837 6.23323 6.27607 6.42040 6.47793 6.48630 6.54671 6.71038 6.89913 7.05338 7.25229 7.67651 7.89066 8.31114 8.32575 9.09519 9.81896 10.01160 11.31077 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.002740 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.366738 B =10216.465698 C =11076.802207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.714 5.714 7 C 0.511 3.489 8 O -0.540 6.540 9 C -0.073 4.073 10 C 0.065 3.935 11 C -0.197 4.197 12 C -0.126 4.126 13 C -0.072 4.072 14 C -0.139 4.139 15 C -0.099 4.099 16 C -0.106 4.106 17 C 0.055 3.945 18 O -0.188 6.188 19 N -0.747 5.747 20 C -0.243 4.243 21 H 0.095 0.905 22 C 0.008 3.992 23 N -0.930 5.930 24 Si 0.879 3.121 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.362 0.638 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.163 2.120 -8.090 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.082 0.918 5 C -0.012 4.012 6 N -0.366 5.366 7 C 0.296 3.704 8 O -0.418 6.418 9 C -0.113 4.113 10 C 0.017 3.983 11 C -0.216 4.216 12 C -0.127 4.127 13 C -0.090 4.090 14 C -0.157 4.157 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.008 3.992 18 O -0.089 6.089 19 N -0.391 5.391 20 C -0.372 4.372 21 H 0.113 0.887 22 C -0.188 4.188 23 N -0.577 5.577 24 Si 0.709 3.291 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.175 0.825 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.195 0.805 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.373 1.518 -7.976 22.863 hybrid contribution 0.367 0.331 1.162 1.263 sum 21.739 1.849 -6.814 22.857 Atomic orbital electron populations 1.21779 0.95169 0.99744 1.03770 1.22042 0.97380 0.97851 1.00128 1.20550 0.89746 0.93022 0.90811 0.91840 1.21747 0.95574 0.82359 1.01549 1.45961 1.06763 1.11104 1.72764 1.20205 0.82767 0.90229 0.77196 1.90735 1.55953 1.46103 1.48975 1.20294 0.86647 0.97023 1.07296 1.21430 0.91179 1.00415 0.85292 1.22145 0.90761 1.09938 0.98741 1.19940 0.94086 1.05304 0.93337 1.20285 0.90362 0.98651 0.99740 1.20751 0.97729 1.02671 0.94570 1.20896 0.97076 0.99614 0.94074 1.19963 0.87686 1.04430 1.00399 1.19618 0.84103 1.02591 0.92929 1.83943 1.13957 1.75388 1.35620 1.42852 1.16965 1.67650 1.11598 1.19046 0.90854 1.27427 0.99908 0.88731 1.24659 0.96369 1.00332 0.97486 1.69686 1.19269 1.41998 1.26792 0.86651 0.81009 0.77760 0.83653 1.21104 1.21810 1.20383 0.89360 0.93857 0.94844 0.93545 0.92676 0.91327 0.91825 0.75179 0.85250 0.86418 0.82473 0.85585 0.85465 0.84899 0.85104 0.80521 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.15 0.34 -2.24 16 2 C -0.13 -2.16 5.61 -26.73 -0.15 -2.31 16 3 C 0.17 2.85 2.59 -67.93 -0.18 2.67 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.71 5.23 -4.04 -0.02 1.69 16 6 N -0.71 -10.28 5.39 -60.30 -0.32 -10.61 16 7 C 0.51 7.53 7.82 -10.98 -0.09 7.45 16 8 O -0.54 -10.03 16.03 5.55 0.09 -9.94 16 9 C -0.07 -0.82 6.20 -29.03 -0.18 -1.00 16 10 C 0.06 0.87 5.72 -35.80 -0.20 0.67 16 11 C -0.20 -2.47 11.01 -37.62 -0.41 -2.88 16 12 C -0.13 -1.62 6.40 -105.16 -0.67 -2.30 16 13 C -0.07 -0.75 10.05 -39.69 -0.40 -1.14 16 14 C -0.14 -1.22 9.98 -39.94 -0.40 -1.62 16 15 C -0.10 -0.87 10.01 -39.54 -0.40 -1.27 16 16 C -0.11 -1.17 10.07 -39.46 -0.40 -1.56 16 17 C 0.06 0.76 7.42 -38.47 -0.29 0.47 16 18 O -0.19 -2.83 10.58 3.92 0.04 -2.79 16 19 N -0.75 -15.45 4.31 -53.42 -0.23 -15.68 16 20 C -0.24 -6.06 8.24 -15.06 -0.12 -6.18 16 21 H 0.09 2.55 7.55 -52.49 -0.40 2.15 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -27.44 13.97 55.49 0.78 -26.67 16 24 Si 0.88 20.86 27.74 -169.99 -4.71 16.15 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 28 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 5.70 8.14 -40.82 -0.33 5.37 16 36 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.36 7.66 5.66 -40.82 -0.23 7.43 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -32.53 368.94 -8.82 -41.35 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.36 Total: 12.06 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.66 Total: -9.44 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.22 Total: -52.96 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.13 Total: -12.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.71 Total: 16.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.53 -8.82 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753481671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.565 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds