Wall clock time and date at job start Tue Mar 31 2020 11:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.33993 * 124.91689 * 89.72299 * 10 9 7 12 12 C 1.46784 * 106.17912 * 179.89753 * 11 10 9 13 13 C 1.39415 * 134.37107 * 180.11589 * 12 11 10 14 14 C 1.36732 * 119.71865 * 180.26396 * 13 12 11 15 15 C 1.38742 * 120.41565 * 0.02562 * 14 13 12 16 16 C 1.37848 * 120.68907 * 359.97438 * 15 14 13 17 17 C 1.38945 * 119.81364 * 359.97438 * 16 15 14 18 18 O 1.34446 * 124.92246 * 270.02377 * 10 9 7 19 19 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 20 20 C 1.36937 * 119.99934 * 274.99832 * 19 3 2 21 21 H 1.07998 * 120.00035 * 0.02562 * 20 19 3 22 22 C 1.38810 * 120.00229 * 180.02562 * 20 19 3 23 23 N 1.31614 * 120.00215 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99755 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47094 * 89.99844 * 24 22 20 26 26 H 1.48504 * 109.47093 * 210.00291 * 24 22 20 27 27 H 1.48497 * 109.47085 * 329.99855 * 24 22 20 28 28 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 29 29 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 30 30 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 32 32 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 33 33 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 34 34 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 35 35 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 36 36 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 37 37 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 38 38 H 1.07994 * 126.91412 * 0.02562 * 11 10 9 39 39 H 1.08003 * 120.13771 * 0.28612 * 13 12 11 40 40 H 1.07999 * 119.79233 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.65259 * 179.97438 * 15 14 13 42 42 H 1.07996 * 120.09166 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00390 * 95.00648 * 19 3 2 44 44 H 0.97001 * 120.00086 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 6 7.4014 4.4748 -0.0701 11 6 8.0797 4.6012 -1.2187 12 6 9.5024 4.5509 -0.8611 13 6 10.6925 4.6273 -1.5834 14 6 11.8896 4.5384 -0.9287 15 6 11.9265 4.3723 0.4482 16 6 10.7603 4.2946 1.1790 17 6 9.5332 4.3838 0.5334 18 8 8.2551 4.3435 0.9602 19 7 1.6524 2.0974 1.2519 20 6 0.4155 2.6734 1.3688 21 1 -0.2743 2.6446 0.5384 22 6 0.0484 3.2944 2.5548 23 7 -1.1405 3.8476 2.6673 24 14 1.2419 3.3450 3.9909 25 1 2.0768 4.5695 3.8978 26 1 0.4813 3.3601 5.2663 27 1 2.1163 2.1454 3.9504 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8499 1.0378 -1.0960 34 1 3.9953 0.8312 0.6659 35 1 3.4409 3.5484 0.1316 36 1 5.4717 5.0895 -0.7424 37 1 5.6107 4.8774 1.0193 38 1 7.6635 4.7188 -2.2082 39 1 10.6689 4.7566 -2.6554 40 1 12.8122 4.5970 -1.4870 41 1 12.8790 4.3031 0.9528 42 1 10.8003 4.1648 2.2504 43 1 2.2718 2.1232 1.9979 44 1 -1.3972 4.2812 3.4962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753481671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:46 Heat of formation + Delta-G solvation = -22.549368 kcal Electronic energy + Delta-G solvation = -25414.421049 eV Core-core repulsion = 21718.409083 eV Total energy + Delta-G solvation = -3696.011967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.48363 -40.77151 -38.83822 -38.39913 -35.29876 -34.40473 -34.12991 -32.49221 -32.06862 -31.36387 -29.86271 -28.17238 -25.33170 -24.21868 -23.79702 -22.84496 -22.23787 -21.77236 -21.19788 -19.64442 -18.37208 -18.23811 -17.93496 -17.20437 -16.99128 -16.87772 -16.30250 -16.13006 -15.86494 -15.16990 -15.02614 -14.73890 -14.63182 -14.56955 -14.35717 -14.30720 -14.05549 -13.70094 -13.22984 -13.16803 -13.08228 -12.87140 -12.82714 -12.64019 -12.38320 -12.09279 -11.88496 -11.86738 -11.62218 -11.42531 -11.24711 -11.00299 -10.87370 -10.09032 -9.60688 -9.28910 -9.13321 -7.94477 -5.26520 -0.08569 0.38652 1.25197 1.40181 1.43135 1.48754 1.55207 1.67699 2.32701 2.52484 2.76467 3.28267 3.36702 3.58518 3.69357 3.82943 3.90639 4.03496 4.10689 4.16706 4.19813 4.32219 4.36680 4.44920 4.48166 4.54731 4.56419 4.74011 4.74921 4.82254 4.92771 5.07725 5.11352 5.19477 5.22847 5.33307 5.43137 5.46761 5.49447 5.53045 5.72438 5.75443 5.88648 6.18311 6.28147 6.52252 7.13970 7.17772 7.88829 8.07199 9.26519 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.002740 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.366738 B =10216.465698 C =11076.802207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.169 3.831 4 H 0.065 0.935 5 C 0.121 3.879 6 N -0.711 5.711 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.066 4.066 10 C 0.039 3.961 11 C -0.199 4.199 12 C -0.153 4.153 13 C -0.082 4.082 14 C -0.135 4.135 15 C -0.090 4.090 16 C -0.126 4.126 17 C 0.019 3.981 18 O -0.214 6.214 19 N -0.746 5.746 20 C -0.203 4.203 21 H 0.070 0.930 22 C -0.059 4.059 23 N -0.982 5.982 24 Si 0.938 3.062 25 H -0.275 1.275 26 H -0.308 1.308 27 H -0.264 1.264 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.416 0.584 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.178 0.822 39 H 0.147 0.853 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.141 0.859 43 H 0.362 0.638 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.065 1.854 -9.371 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.061 3.939 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.363 5.363 7 C 0.300 3.700 8 O -0.462 6.462 9 C -0.105 4.105 10 C -0.009 4.009 11 C -0.218 4.218 12 C -0.154 4.154 13 C -0.100 4.100 14 C -0.153 4.153 15 C -0.108 4.108 16 C -0.144 4.144 17 C -0.028 4.028 18 O -0.117 6.117 19 N -0.390 5.390 20 C -0.334 4.334 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.634 5.634 24 Si 0.768 3.232 25 H -0.201 1.201 26 H -0.236 1.236 27 H -0.189 1.189 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.183 0.817 37 H 0.148 0.852 38 H 0.195 0.805 39 H 0.165 0.835 40 H 0.180 0.820 41 H 0.185 0.815 42 H 0.159 0.841 43 H 0.195 0.805 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 24.315 1.234 -9.293 26.059 hybrid contribution -0.436 0.333 1.418 1.521 sum 23.878 1.567 -7.874 25.192 Atomic orbital electron populations 1.21690 0.96273 1.00421 1.01687 1.21980 0.96207 0.97234 1.01578 1.20695 0.91066 0.93231 0.88897 0.91709 1.21603 0.93790 0.82946 1.02052 1.45942 1.06950 1.10857 1.72508 1.20724 0.82224 0.91217 0.75870 1.90715 1.56832 1.47704 1.50899 1.20389 0.85635 0.95101 1.09332 1.21827 0.91941 1.01653 0.85450 1.22515 0.90949 1.08935 0.99389 1.20308 0.95117 1.06474 0.93466 1.20670 0.90068 0.98313 1.00927 1.21230 0.98525 1.00749 0.94797 1.21386 0.97630 0.97359 0.94386 1.20351 0.87624 1.05096 1.01364 1.20186 0.84358 1.04196 0.94037 1.83885 1.14863 1.76179 1.36767 1.42844 1.15410 1.67629 1.13099 1.18956 0.91401 1.24650 0.98360 0.91168 1.25272 0.97854 1.01668 1.00256 1.69845 1.21628 1.44697 1.27224 0.85667 0.79076 0.78503 0.79947 1.20139 1.23557 1.18902 0.93522 0.93701 0.92899 0.90297 0.92981 0.89824 0.92702 0.74708 0.81660 0.85236 0.80472 0.83494 0.82028 0.81479 0.84117 0.80470 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.18 71.98 0.66 -4.20 16 2 C -0.13 -3.91 5.61 30.59 0.17 -3.74 16 3 C 0.17 5.43 2.59 44.99 0.12 5.54 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 3.44 5.23 86.38 0.45 3.89 16 6 N -0.71 -19.24 5.39 -463.07 -2.49 -21.74 16 7 C 0.51 14.49 7.82 87.66 0.69 15.17 16 8 O -0.58 -21.28 16.03 -3.04 -0.05 -21.33 16 9 C -0.07 -1.39 6.20 29.10 0.18 -1.21 16 10 C 0.04 1.03 5.72 24.72 0.14 1.18 16 11 C -0.20 -4.88 11.01 23.54 0.26 -4.63 16 12 C -0.15 -3.87 6.40 -20.21 -0.13 -4.00 16 13 C -0.08 -1.54 10.05 22.20 0.22 -1.31 16 14 C -0.14 -1.97 9.98 22.04 0.22 -1.75 16 15 C -0.09 -1.36 10.01 22.30 0.22 -1.14 16 16 C -0.13 -2.68 10.07 22.35 0.23 -2.46 16 17 C 0.02 0.53 7.42 22.99 0.17 0.70 16 18 O -0.21 -6.63 10.58 -8.90 -0.09 -6.73 16 19 N -0.75 -30.06 4.31 -322.93 -1.39 -31.45 16 20 C -0.20 -10.15 8.24 84.03 0.69 -9.45 16 21 H 0.07 3.85 7.55 -2.91 -0.02 3.83 16 22 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 23 N -0.98 -59.66 13.97 21.65 0.30 -59.36 16 24 Si 0.94 43.41 27.74 68.60 1.90 45.31 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 27 H -0.26 -11.39 6.52 99.48 0.65 -10.75 16 28 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.42 10.72 8.14 -92.71 -0.75 9.96 16 36 H 0.17 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.36 14.74 5.66 -92.71 -0.52 14.22 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.27 368.94 2.62 -70.65 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.32 Total: 34.81 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 4.76 Total: -10.17 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -3.58 Total: -112.55 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.14 Total: -28.05 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.90 Total: 45.31 kcal Total: -73.27 2.62 -70.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753481671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.103 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds