Wall clock time and date at job start Tue Mar 31 2020 11:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 H 1.09000 * 109.47194 * 55.00204 * 3 2 1 5 5 C 1.53002 * 109.46818 * 174.99902 * 3 2 1 6 6 N 1.46903 * 109.47050 * 185.62480 * 5 3 2 7 7 C 1.47479 * 111.00320 * 64.94231 * 6 5 3 8 8 C 1.53511 * 88.00039 * 138.67411 * 7 6 5 9 9 C 1.47481 * 111.00194 * 160.91315 * 6 5 3 10 10 H 1.09007 * 113.47612 * 336.12592 * 9 6 5 11 11 C 1.53008 * 113.47473 * 106.52668 * 9 6 5 12 12 N 1.46499 * 109.47069 * 305.00270 * 11 9 6 13 13 C 1.34776 * 119.99740 * 180.02562 * 12 11 9 14 14 O 1.21284 * 120.00132 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00233 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47277 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99778 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99760 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00183 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47201 * 119.99761 * 21 19 17 24 24 H 1.48506 * 109.46781 * 239.99625 * 21 19 17 25 25 O 1.42898 * 109.47577 * 294.99833 * 3 2 1 26 26 C 1.42899 * 114.00377 * 145.53928 * 25 3 2 27 27 H 1.09005 * 109.47515 * 59.99937 * 1 2 3 28 28 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47492 * 299.99515 * 1 2 3 30 30 H 1.09000 * 109.47241 * 240.00055 * 2 1 3 31 31 H 1.08998 * 109.47218 * 119.99834 * 2 1 3 32 32 H 1.08999 * 109.47478 * 65.62456 * 5 3 2 33 33 H 1.09006 * 109.47371 * 305.62001 * 5 3 2 34 34 H 1.09001 * 113.47700 * 253.47442 * 7 6 5 35 35 H 1.09001 * 113.47224 * 23.88116 * 7 6 5 36 36 H 1.09001 * 114.17026 * 87.64917 * 8 7 6 37 37 H 1.08998 * 114.17065 * 220.36602 * 8 7 6 38 38 H 1.08996 * 109.47102 * 65.00391 * 11 9 6 39 39 H 1.09000 * 109.46582 * 185.00143 * 11 9 6 40 40 H 0.96994 * 120.00164 * 359.97438 * 12 11 9 41 41 H 1.08996 * 109.47182 * 300.00279 * 15 13 12 42 42 H 1.09011 * 109.46765 * 60.00031 * 15 13 12 43 43 H 0.97000 * 120.00177 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.46991 * 59.51844 * 26 25 3 45 45 H 1.08997 * 109.47282 * 179.52399 * 26 25 3 46 46 H 1.09003 * 109.47038 * 299.52786 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0431 2.8267 0.2612 7 6 3.5639 3.4312 1.5181 8 6 4.9563 4.0554 1.6860 9 6 5.4040 2.8618 0.8286 10 1 5.6536 1.9764 1.4134 11 6 6.4828 3.2171 -0.1967 12 7 6.4025 2.2926 -1.3303 13 6 7.2615 2.4149 -2.3616 14 8 8.1011 3.2900 -2.3511 15 6 7.1794 1.4636 -3.5275 16 16 8.4555 1.8841 -4.7403 17 6 8.1378 0.6512 -5.9585 18 1 7.3409 -0.0623 -5.8097 19 6 8.9118 0.5971 -7.1094 20 7 9.8828 1.4671 -7.2910 21 14 8.5746 -0.7094 -8.4012 22 1 7.4383 -1.5583 -7.9618 23 1 8.2347 -0.0550 -9.6901 24 1 9.7833 -1.5538 -8.5783 25 8 1.6618 2.0815 -1.2210 26 6 1.3580 3.4707 -1.0803 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0033 0.9937 -0.7645 33 1 3.8575 0.8708 1.0052 34 1 2.7729 4.1668 1.3723 35 1 3.3211 2.6982 2.2875 36 1 5.0730 5.0235 1.1988 37 1 5.3332 4.0374 2.7085 38 1 6.3282 4.2372 -0.5481 39 1 7.4656 3.1379 0.2680 40 1 5.7318 1.5920 -1.3382 41 1 7.3338 0.4436 -3.1758 42 1 6.1966 1.5428 -3.9925 43 1 10.4240 1.4291 -8.0951 44 1 2.2304 3.9958 -0.6913 45 1 1.0887 3.8840 -2.0523 46 1 0.5233 3.5920 -0.3899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754474057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:09 Heat of formation + Delta-G solvation = -53.274344 kcal Electronic energy + Delta-G solvation = -24641.454130 eV Core-core repulsion = 21079.553780 eV Total energy + Delta-G solvation = -3561.900350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99000 -38.88204 -38.20337 -34.25731 -34.00529 -32.38083 -31.43821 -29.92599 -27.70027 -27.40479 -26.07639 -25.42688 -23.47983 -22.94741 -21.17105 -20.34851 -19.97979 -17.85978 -17.18317 -16.70548 -16.37804 -16.18708 -15.64215 -15.22686 -14.91055 -14.76171 -14.69886 -14.25194 -14.08105 -13.85236 -13.61543 -13.43291 -13.12755 -12.81913 -12.61556 -12.47714 -12.30019 -12.04212 -11.69948 -11.63024 -11.52297 -11.41126 -11.20100 -11.03494 -11.01192 -10.96656 -10.76984 -10.67463 -9.75778 -9.71272 -9.35270 -9.16405 -9.03078 -8.74668 -8.17066 -6.44046 -6.17146 -3.86886 3.07976 3.20833 3.25055 3.30894 3.35374 3.49580 3.58202 3.80977 4.07003 4.25092 4.31321 4.43209 4.63787 4.70154 4.82372 4.86321 4.93894 4.97750 5.04610 5.07417 5.15985 5.17993 5.20948 5.28630 5.37173 5.39831 5.48122 5.49748 5.60747 5.63363 5.68108 5.70602 5.76527 5.79670 5.93477 5.94652 5.97353 5.99595 6.22340 6.66465 6.74045 7.05301 7.64776 7.81909 8.40437 8.72072 9.28345 10.90379 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003005 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.859761 B = 9315.502278 C =10820.727346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.095 3.905 4 H 0.059 0.941 5 C -0.007 4.007 6 N -0.457 5.457 7 C -0.009 4.009 8 C -0.133 4.133 9 C 0.014 3.986 10 H 0.084 0.916 11 C 0.141 3.859 12 N -0.731 5.731 13 C 0.532 3.468 14 O -0.521 6.521 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 O -0.371 6.371 26 C 0.030 3.970 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.267 0.733 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.738 0.542 22.113 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.077 0.923 5 C -0.136 4.136 6 N -0.180 5.180 7 C -0.138 4.138 8 C -0.172 4.172 9 C -0.096 4.096 10 H 0.102 0.898 11 C 0.017 3.983 12 N -0.386 5.386 13 C 0.318 3.682 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 O -0.290 6.290 26 C -0.067 4.067 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.230 0.770 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.357 2.256 21.171 27.469 hybrid contribution -1.394 -2.576 0.129 2.932 sum -18.751 -0.320 21.300 28.379 Atomic orbital electron populations 1.21701 0.95153 1.01715 1.02068 1.21643 0.96831 0.94870 1.02939 1.22110 0.92275 0.94079 0.87845 0.92300 1.23368 0.96988 0.91081 1.02119 1.69058 1.03547 1.15840 1.29522 1.23787 0.98491 0.99290 0.92231 1.23186 0.95437 0.98386 1.00158 1.23783 0.91185 0.99192 0.95411 0.89838 1.21198 0.96972 0.94352 0.85828 1.45906 1.36826 1.35346 1.20542 1.20277 0.80267 0.84954 0.82732 1.90692 1.35503 1.34515 1.78830 1.23521 1.06944 1.00967 0.98884 1.85368 1.38735 1.44137 1.15163 1.22920 1.21239 1.17789 1.06228 0.90904 1.24991 0.94523 0.96518 0.97598 1.70034 1.18616 1.34541 1.27175 0.86119 0.78278 0.80603 0.80517 1.19613 1.20569 1.20608 1.87918 1.87953 1.22615 1.30502 1.22871 0.99320 0.82460 1.02002 0.91867 0.92593 0.93234 0.90623 0.90936 0.89397 0.93025 0.89673 0.91365 0.88284 0.90220 0.91063 0.91380 0.77044 0.89462 0.89232 0.92292 0.92075 0.90129 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.81 37.15 0.36 -0.67 16 2 C -0.12 -0.91 5.64 -26.73 -0.15 -1.06 16 3 C 0.10 0.78 2.20 -26.73 -0.06 0.72 16 4 H 0.06 0.43 6.78 -51.93 -0.35 0.08 16 5 C -0.01 -0.05 4.27 -3.82 -0.02 -0.07 16 6 N -0.46 -3.97 4.63 -236.30 -1.09 -5.07 16 7 C -0.01 -0.06 6.02 -7.55 -0.05 -0.10 16 8 C -0.13 -0.87 8.01 -26.14 -0.21 -1.08 16 9 C 0.01 0.12 3.25 -71.37 -0.23 -0.12 16 10 H 0.08 0.62 7.62 -51.92 -0.40 0.23 16 11 C 0.14 1.72 5.82 -4.04 -0.02 1.69 16 12 N -0.73 -10.66 5.46 -60.29 -0.33 -10.99 16 13 C 0.53 10.52 7.85 -10.99 -0.09 10.43 16 14 O -0.52 -12.31 15.86 5.55 0.09 -12.22 16 15 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 16 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 17 C -0.53 -15.58 9.50 30.94 0.29 -15.28 16 18 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16 21 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 O -0.37 -4.03 9.86 -35.23 -0.35 -4.38 16 26 C 0.03 0.27 10.68 101.05 1.08 1.35 16 27 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.85 6.58 -51.93 -0.34 0.51 16 33 H 0.05 0.35 7.56 -51.93 -0.39 -0.04 16 34 H 0.08 0.52 7.45 -51.93 -0.39 0.13 16 35 H 0.07 0.36 7.84 -51.93 -0.41 -0.04 16 36 H 0.10 0.70 7.94 -51.93 -0.41 0.29 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 4.98 6.34 -40.82 -0.26 4.72 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.81 8.14 -51.91 -0.42 1.39 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.06 0.57 5.53 -51.93 -0.29 0.28 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -35.15 382.01 -9.21 -44.36 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.82 Total: 0.74 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 1.04 Total: -5.20 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.69 Total: -41.95 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.26 Total: -16.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.15 -9.21 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754474057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.916 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds