Wall clock time and date at job start Tue Mar 31 2020 11:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46697 * 2 1 4 4 H 1.09000 * 109.47194 * 55.00204 * 3 2 1 5 5 C 1.53002 * 109.46818 * 174.99902 * 3 2 1 6 6 N 1.46903 * 109.47050 * 185.62480 * 5 3 2 7 7 C 1.47479 * 111.00320 * 64.94231 * 6 5 3 8 8 C 1.53511 * 88.00039 * 138.67411 * 7 6 5 9 9 C 1.47481 * 111.00194 * 160.91315 * 6 5 3 10 10 H 1.09007 * 113.47612 * 336.12592 * 9 6 5 11 11 C 1.53008 * 113.47473 * 106.52668 * 9 6 5 12 12 N 1.46499 * 109.47069 * 305.00270 * 11 9 6 13 13 C 1.34776 * 119.99740 * 180.02562 * 12 11 9 14 14 O 1.21284 * 120.00132 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00233 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47277 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99778 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99760 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00183 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47201 * 119.99761 * 21 19 17 24 24 H 1.48506 * 109.46781 * 239.99625 * 21 19 17 25 25 O 1.42898 * 109.47577 * 294.99833 * 3 2 1 26 26 C 1.42899 * 114.00377 * 145.53928 * 25 3 2 27 27 H 1.09005 * 109.47515 * 59.99937 * 1 2 3 28 28 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47492 * 299.99515 * 1 2 3 30 30 H 1.09000 * 109.47241 * 240.00055 * 2 1 3 31 31 H 1.08998 * 109.47218 * 119.99834 * 2 1 3 32 32 H 1.08999 * 109.47478 * 65.62456 * 5 3 2 33 33 H 1.09006 * 109.47371 * 305.62001 * 5 3 2 34 34 H 1.09001 * 113.47700 * 253.47442 * 7 6 5 35 35 H 1.09001 * 113.47224 * 23.88116 * 7 6 5 36 36 H 1.09001 * 114.17026 * 87.64917 * 8 7 6 37 37 H 1.08998 * 114.17065 * 220.36602 * 8 7 6 38 38 H 1.08996 * 109.47102 * 65.00391 * 11 9 6 39 39 H 1.09000 * 109.46582 * 185.00143 * 11 9 6 40 40 H 0.96994 * 120.00164 * 359.97438 * 12 11 9 41 41 H 1.08996 * 109.47182 * 300.00279 * 15 13 12 42 42 H 1.09011 * 109.46765 * 60.00031 * 15 13 12 43 43 H 0.97000 * 120.00177 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.46991 * 59.51844 * 26 25 3 45 45 H 1.08997 * 109.47282 * 179.52399 * 26 25 3 46 46 H 1.09003 * 109.47038 * 299.52786 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5647 1.4444 0.1258 6 7 4.0431 2.8267 0.2612 7 6 3.5639 3.4312 1.5181 8 6 4.9563 4.0554 1.6860 9 6 5.4040 2.8618 0.8286 10 1 5.6536 1.9764 1.4134 11 6 6.4828 3.2171 -0.1967 12 7 6.4025 2.2926 -1.3303 13 6 7.2615 2.4149 -2.3616 14 8 8.1011 3.2900 -2.3511 15 6 7.1794 1.4636 -3.5275 16 16 8.4555 1.8841 -4.7403 17 6 8.1378 0.6512 -5.9585 18 1 7.3409 -0.0623 -5.8097 19 6 8.9118 0.5971 -7.1094 20 7 9.8828 1.4671 -7.2910 21 14 8.5746 -0.7094 -8.4012 22 1 7.4383 -1.5583 -7.9618 23 1 8.2347 -0.0550 -9.6901 24 1 9.7833 -1.5538 -8.5783 25 8 1.6618 2.0815 -1.2210 26 6 1.3580 3.4707 -1.0803 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0033 0.9937 -0.7645 33 1 3.8575 0.8708 1.0052 34 1 2.7729 4.1668 1.3723 35 1 3.3211 2.6982 2.2875 36 1 5.0730 5.0235 1.1988 37 1 5.3332 4.0374 2.7085 38 1 6.3282 4.2372 -0.5481 39 1 7.4656 3.1379 0.2680 40 1 5.7318 1.5920 -1.3382 41 1 7.3338 0.4436 -3.1758 42 1 6.1966 1.5428 -3.9925 43 1 10.4240 1.4291 -8.0951 44 1 2.2304 3.9958 -0.6913 45 1 1.0887 3.8840 -2.0523 46 1 0.5233 3.5920 -0.3899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754474057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:08 Heat of formation + Delta-G solvation = -79.258737 kcal Electronic energy + Delta-G solvation = -24642.580898 eV Core-core repulsion = 21079.553780 eV Total energy + Delta-G solvation = -3563.027118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67856 -40.34485 -38.92815 -35.57612 -34.65628 -34.59175 -32.15148 -31.32464 -28.75123 -28.11477 -27.63030 -26.74894 -24.24290 -23.55725 -21.94260 -21.61690 -20.70980 -19.83573 -18.06522 -17.66631 -17.46018 -17.29265 -16.88982 -16.59539 -16.40967 -15.87677 -15.80212 -15.43169 -14.95963 -14.72761 -14.64188 -14.49205 -14.37518 -14.04613 -13.76251 -13.35510 -13.17404 -13.15353 -12.92470 -12.83532 -12.62851 -12.60237 -12.28170 -12.14463 -12.01032 -11.79162 -11.73368 -11.63299 -11.39976 -11.16401 -10.91914 -10.39140 -10.29479 -10.09150 -9.78631 -8.67765 -8.35478 -6.13773 1.26121 1.41030 1.46049 1.58020 1.60957 2.24499 2.28158 2.89495 2.96597 2.98493 3.30873 3.46284 3.74894 3.78432 3.92982 4.05138 4.12360 4.15277 4.25168 4.30098 4.39910 4.42300 4.44312 4.47144 4.49406 4.52285 4.66970 4.70221 4.77276 4.86665 4.87026 4.95860 5.01052 5.05426 5.09275 5.21486 5.22424 5.29470 5.41174 5.42062 5.49247 6.07913 6.19377 6.40589 6.47386 7.05675 7.22711 8.74153 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003005 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.859761 B = 9315.502278 C =10820.727346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.094 3.906 4 H 0.072 0.928 5 C -0.006 4.006 6 N -0.480 5.480 7 C -0.003 4.003 8 C -0.126 4.126 9 C 0.019 3.981 10 H 0.102 0.898 11 C 0.138 3.862 12 N -0.707 5.707 13 C 0.532 3.468 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.147 6.147 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.272 1.272 25 O -0.398 6.398 26 C 0.030 3.970 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.408 0.592 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.272 0.728 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.650 -1.034 23.860 31.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.036 3.964 4 H 0.090 0.910 5 C -0.135 4.135 6 N -0.203 5.203 7 C -0.131 4.131 8 C -0.164 4.164 9 C -0.091 4.091 10 H 0.120 0.880 11 C 0.014 3.986 12 N -0.360 5.360 13 C 0.318 3.682 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.080 5.920 17 C -0.695 4.695 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.822 3.178 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.197 1.197 25 O -0.318 6.318 26 C -0.066 4.066 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.245 0.755 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.318 0.667 22.965 30.017 hybrid contribution -0.871 -2.047 -0.301 2.245 sum -20.189 -1.379 22.664 30.383 Atomic orbital electron populations 1.21681 0.95000 1.02056 1.01722 1.21670 0.96969 0.94412 1.03167 1.22240 0.92348 0.94426 0.87339 0.90974 1.23357 0.96869 0.91086 1.02155 1.69041 1.03708 1.16318 1.31239 1.23815 0.98329 0.99469 0.91465 1.23166 0.95400 0.97086 1.00719 1.23796 0.89892 1.00930 0.94442 0.88016 1.21404 0.98679 0.92982 0.85544 1.45721 1.35220 1.35447 1.19612 1.20039 0.80660 0.84151 0.83387 1.90678 1.37698 1.36259 1.79845 1.23359 1.04632 1.02359 0.97703 1.85520 1.42702 1.45587 1.18171 1.23234 1.21695 1.17874 1.06695 0.90114 1.26140 0.93960 0.98986 1.00046 1.70190 1.19775 1.36630 1.28144 0.84889 0.78674 0.77310 0.76964 1.18163 1.19835 1.19705 1.87886 1.88221 1.23354 1.32304 1.22882 0.99733 0.81842 1.02127 0.93592 0.91946 0.92156 0.92121 0.88935 0.91257 0.90950 0.89405 0.89436 0.89226 0.88097 0.92640 0.91581 0.75541 0.87440 0.87975 0.91934 0.92471 0.90748 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.81 71.98 0.71 -1.09 16 2 C -0.12 -1.57 5.64 30.59 0.17 -1.39 16 3 C 0.09 1.35 2.20 30.60 0.07 1.42 16 4 H 0.07 0.83 6.78 -2.39 -0.02 0.82 16 5 C -0.01 -0.08 4.27 86.30 0.37 0.29 16 6 N -0.48 -7.28 4.63 -901.51 -4.17 -11.46 16 7 C 0.00 -0.02 6.02 83.57 0.50 0.48 16 8 C -0.13 -1.31 8.01 30.98 0.25 -1.06 16 9 C 0.02 0.27 3.25 42.23 0.14 0.41 16 10 H 0.10 1.15 7.62 -2.38 -0.02 1.13 16 11 C 0.14 3.23 5.82 86.38 0.50 3.74 16 12 N -0.71 -20.00 5.46 -463.05 -2.53 -22.53 16 13 C 0.53 21.16 7.85 87.66 0.69 21.85 16 14 O -0.57 -27.55 15.86 -3.04 -0.05 -27.60 16 15 C -0.13 -5.51 6.16 71.23 0.44 -5.07 16 16 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 17 C -0.55 -32.23 9.50 67.95 0.65 -31.59 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 21 Si 1.00 44.59 29.55 68.60 2.03 46.62 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 O -0.40 -8.26 9.86 -148.98 -1.47 -9.73 16 26 C 0.03 0.52 10.68 113.37 1.21 1.73 16 27 H 0.04 0.71 7.82 -2.38 -0.02 0.70 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.23 6.58 -2.39 -0.02 1.21 16 33 H 0.07 0.72 7.56 -2.38 -0.02 0.70 16 34 H 0.09 0.83 7.45 -2.39 -0.02 0.81 16 35 H 0.09 0.54 7.84 -2.39 -0.02 0.53 16 36 H 0.09 1.13 7.94 -2.39 -0.02 1.11 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 1.50 7.88 -2.39 -0.02 1.48 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.41 9.67 6.34 -92.71 -0.59 9.08 16 41 H 0.11 4.12 8.14 -2.40 -0.02 4.11 16 42 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 43 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 44 H 0.06 1.00 5.53 -2.39 -0.01 0.99 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.05 0.62 8.10 -2.39 -0.02 0.60 16 Total: -1.00 -78.55 382.01 -0.54 -79.10 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.37 Total: 20.94 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 6.15 Total: -9.05 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -6.42 Total: -90.66 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.52 Total: -37.32 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -78.55 -0.54 -79.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754474057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.162 kcal (2) G-P(sol) polarization free energy of solvation -78.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds