Wall clock time and date at job start Tue Mar 31 2020 11:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46666 * 2 1 4 4 H 1.08992 * 109.46848 * 305.31920 * 3 2 1 5 5 C 1.53004 * 109.46576 * 185.32506 * 3 2 1 6 6 N 1.46896 * 109.46697 * 174.52803 * 5 3 2 7 7 C 1.47481 * 111.00094 * 295.98157 * 6 5 3 8 8 C 1.53513 * 87.93424 * 221.29947 * 7 6 5 9 9 C 1.47486 * 110.99863 * 200.01314 * 6 5 3 10 10 H 1.09001 * 113.47289 * 23.93567 * 9 6 5 11 11 C 1.53003 * 113.47622 * 253.52847 * 9 6 5 12 12 N 1.46503 * 109.47152 * 55.00299 * 11 9 6 13 13 C 1.34766 * 120.00088 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00205 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00081 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.47172 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99930 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00001 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99944 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00039 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47163 * 89.99795 * 21 19 17 23 23 H 1.48506 * 109.47088 * 209.99814 * 21 19 17 24 24 H 1.48499 * 109.46881 * 329.99556 * 21 19 17 25 25 O 1.42902 * 109.47095 * 65.32640 * 3 2 1 26 26 C 1.42902 * 113.99388 * 217.52459 * 25 3 2 27 27 H 1.08999 * 109.47186 * 183.04395 * 1 2 3 28 28 H 1.09001 * 109.47198 * 303.04037 * 1 2 3 29 29 H 1.08996 * 109.47397 * 63.04353 * 1 2 3 30 30 H 1.09002 * 109.47214 * 240.00111 * 2 1 3 31 31 H 1.09000 * 109.47112 * 120.00163 * 2 1 3 32 32 H 1.08997 * 109.47507 * 54.52424 * 5 3 2 33 33 H 1.09000 * 109.46782 * 294.52530 * 5 3 2 34 34 H 1.09001 * 113.47602 * 336.06750 * 7 6 5 35 35 H 1.09000 * 113.47030 * 106.53446 * 7 6 5 36 36 H 1.08999 * 114.16986 * 139.67129 * 8 7 6 37 37 H 1.09002 * 114.17076 * 272.37980 * 8 7 6 38 38 H 1.09003 * 109.47020 * 174.99574 * 11 9 6 39 39 H 1.08996 * 109.46899 * 295.00122 * 11 9 6 40 40 H 0.97001 * 119.99525 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47305 * 299.99500 * 15 13 12 42 42 H 1.09001 * 109.47270 * 59.99711 * 15 13 12 43 43 H 0.97007 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.46357 * 174.04888 * 26 25 3 45 45 H 1.09001 * 109.46896 * 294.04571 * 26 25 3 46 46 H 1.09000 * 109.47274 * 54.04937 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6008 1.9831 -0.8385 5 6 3.5641 1.4446 -0.1339 6 7 4.0421 2.8274 -0.2656 7 6 3.5382 3.4449 -1.5065 8 6 4.9283 4.0684 -1.6949 9 6 5.3911 2.8659 -0.8605 10 1 5.6266 1.9863 -1.4597 11 6 6.4915 3.2080 0.1460 12 7 6.4327 2.2715 1.2711 13 6 7.3122 2.3816 2.2862 14 8 8.1528 3.2557 2.2682 15 6 7.2513 1.4187 3.4438 16 16 8.5533 1.8233 4.6344 17 6 8.2581 0.5780 5.8455 18 1 7.4567 -0.1322 5.7055 19 6 9.0550 0.5105 6.9799 20 7 10.0315 1.3765 7.1508 21 14 8.7426 -0.8101 8.2636 22 1 9.5399 -2.0188 7.9344 23 1 9.1407 -0.3038 9.6017 24 1 7.2988 -1.1574 8.2752 25 8 1.6684 2.0791 1.2243 26 6 1.2972 3.4512 1.0765 27 1 -0.3633 -1.0262 0.0546 28 1 -0.3634 0.5603 0.8615 29 1 -0.3634 0.4658 -0.9160 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8520 0.8749 -1.0174 33 1 4.0072 0.9898 0.7521 34 1 3.2792 2.7199 -2.2782 35 1 2.7518 4.1804 -1.3371 36 1 5.2850 4.0607 -2.7249 37 1 5.0565 5.0310 -1.1998 38 1 7.4645 3.1317 -0.3396 39 1 6.3464 4.2245 0.5114 40 1 5.7602 1.5726 1.2856 41 1 6.2783 1.4950 3.9291 42 1 7.3965 0.4020 3.0787 43 1 10.5887 1.3291 7.9434 44 1 0.9288 3.8323 2.0290 45 1 2.1658 4.0310 0.7646 46 1 0.5137 3.5366 0.3235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754474058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:12 Heat of formation + Delta-G solvation = -53.609516 kcal Electronic energy + Delta-G solvation = -24624.792618 eV Core-core repulsion = 21062.877733 eV Total energy + Delta-G solvation = -3561.914884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98523 -38.88105 -38.21758 -34.25725 -34.00122 -32.37892 -31.44275 -29.92326 -27.69567 -27.40825 -26.09322 -25.42363 -23.47761 -22.94888 -21.17620 -20.34695 -19.97246 -17.85545 -17.17995 -16.70488 -16.37392 -16.18352 -15.64622 -15.23307 -14.90937 -14.75882 -14.69733 -14.26466 -14.06984 -13.84849 -13.62080 -13.45265 -13.12488 -12.81708 -12.61847 -12.48017 -12.29583 -12.02950 -11.71080 -11.62690 -11.52387 -11.41241 -11.20613 -11.03839 -11.01628 -10.97206 -10.77256 -10.67621 -9.76431 -9.70479 -9.35371 -9.16694 -9.02126 -8.74350 -8.17296 -6.43876 -6.16794 -3.86621 3.08236 3.21207 3.25959 3.30822 3.34881 3.50026 3.56882 3.81377 4.07718 4.25431 4.31285 4.43573 4.63947 4.69677 4.82701 4.86616 4.93697 4.97834 5.04401 5.07779 5.12448 5.18241 5.21520 5.28668 5.35908 5.40008 5.46729 5.49846 5.60459 5.63352 5.67176 5.70487 5.76077 5.78944 5.93371 5.94689 5.97035 5.99782 6.22536 6.67245 6.74344 7.04418 7.64629 7.82254 8.40393 8.72389 9.28518 10.90676 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002991 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.995985 B = 9358.809722 C =10860.175987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.095 3.905 4 H 0.060 0.940 5 C -0.006 4.006 6 N -0.456 5.456 7 C -0.009 4.009 8 C -0.133 4.133 9 C 0.014 3.986 10 H 0.084 0.916 11 C 0.141 3.859 12 N -0.731 5.731 13 C 0.532 3.468 14 O -0.521 6.521 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 O -0.371 6.371 26 C 0.032 3.968 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.395 0.605 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.291 0.781 -21.764 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.037 3.963 4 H 0.078 0.922 5 C -0.135 4.135 6 N -0.179 5.179 7 C -0.138 4.138 8 C -0.172 4.172 9 C -0.096 4.096 10 H 0.102 0.898 11 C 0.017 3.983 12 N -0.386 5.386 13 C 0.318 3.682 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 O -0.289 6.289 26 C -0.065 4.065 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.880 2.491 -20.827 27.562 hybrid contribution -1.414 -2.589 -0.140 2.953 sum -19.294 -0.098 -20.967 28.493 Atomic orbital electron populations 1.21705 0.95181 1.01846 1.01949 1.21668 0.96806 0.94982 1.02953 1.22129 0.92420 0.94084 0.87711 0.92230 1.23343 0.96903 0.91129 1.02085 1.69071 1.03358 1.15421 1.30033 1.23783 0.98419 0.99195 0.92392 1.23166 0.95404 0.98311 1.00287 1.23764 0.91300 0.99165 0.95354 0.89850 1.21199 0.96808 0.94171 0.86168 1.45905 1.35820 1.35024 1.21861 1.20273 0.80292 0.85056 0.82608 1.90691 1.35920 1.34809 1.78126 1.23522 1.07008 1.00844 0.98949 1.85365 1.37090 1.43730 1.17183 1.22880 1.20426 1.17496 1.07450 0.90958 1.24989 0.94528 0.96555 0.97539 1.70026 1.17746 1.34657 1.27944 0.86172 0.78666 0.80783 0.79900 1.20309 1.20772 1.19676 1.87923 1.86923 1.24189 1.29886 1.22854 0.98926 0.83036 1.01659 0.92562 0.91880 0.93243 0.90945 0.90619 0.93017 0.89387 0.91388 0.89687 0.90240 0.88287 0.91381 0.91064 0.77045 0.89230 0.89464 0.92241 0.90168 0.92413 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.84 37.16 0.37 -0.66 16 2 C -0.13 -0.92 5.64 -26.73 -0.15 -1.07 16 3 C 0.10 0.78 2.18 -26.73 -0.06 0.72 16 4 H 0.06 0.43 6.60 -51.93 -0.34 0.09 16 5 C -0.01 -0.05 4.27 -3.82 -0.02 -0.06 16 6 N -0.46 -4.00 4.86 -236.49 -1.15 -5.15 16 7 C -0.01 -0.06 6.07 -7.54 -0.05 -0.10 16 8 C -0.13 -0.88 8.00 -26.20 -0.21 -1.09 16 9 C 0.01 0.12 3.25 -71.43 -0.23 -0.12 16 10 H 0.08 0.63 7.60 -51.93 -0.39 0.23 16 11 C 0.14 1.72 5.82 -4.04 -0.02 1.70 16 12 N -0.73 -10.69 5.46 -60.29 -0.33 -11.02 16 13 C 0.53 10.54 7.85 -10.99 -0.09 10.45 16 14 O -0.52 -12.33 15.86 5.56 0.09 -12.24 16 15 C -0.15 -3.25 6.16 36.00 0.22 -3.03 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.61 9.50 30.94 0.29 -15.32 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.66 13.22 55.49 0.73 -25.93 16 21 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 O -0.37 -3.99 9.81 -35.23 -0.35 -4.34 16 26 C 0.03 0.28 10.71 101.05 1.08 1.36 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.35 7.55 -51.93 -0.39 -0.04 16 33 H 0.09 0.86 6.61 -51.93 -0.34 0.51 16 34 H 0.07 0.36 7.83 -51.93 -0.41 -0.04 16 35 H 0.08 0.53 7.51 -51.93 -0.39 0.14 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.71 7.94 -51.93 -0.41 0.30 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 40 H 0.40 4.99 6.35 -40.82 -0.26 4.73 16 41 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 42 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.54 6.03 -51.93 -0.31 0.22 16 46 H 0.03 0.22 7.97 -51.93 -0.41 -0.19 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -35.20 382.47 -9.26 -44.46 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.83 Total: 0.74 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 1.05 Total: -5.19 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.74 Total: -42.09 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.26 Total: -16.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.20 -9.26 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754474058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.154 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds