Wall clock time and date at job start Tue Mar 31 2020 11:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46666 * 2 1 4 4 H 1.08992 * 109.46848 * 305.31920 * 3 2 1 5 5 C 1.53004 * 109.46576 * 185.32506 * 3 2 1 6 6 N 1.46896 * 109.46697 * 174.52803 * 5 3 2 7 7 C 1.47481 * 111.00094 * 295.98157 * 6 5 3 8 8 C 1.53513 * 87.93424 * 221.29947 * 7 6 5 9 9 C 1.47486 * 110.99863 * 200.01314 * 6 5 3 10 10 H 1.09001 * 113.47289 * 23.93567 * 9 6 5 11 11 C 1.53003 * 113.47622 * 253.52847 * 9 6 5 12 12 N 1.46503 * 109.47152 * 55.00299 * 11 9 6 13 13 C 1.34766 * 120.00088 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00205 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00081 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.47172 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99930 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00001 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99944 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00039 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47163 * 89.99795 * 21 19 17 23 23 H 1.48506 * 109.47088 * 209.99814 * 21 19 17 24 24 H 1.48499 * 109.46881 * 329.99556 * 21 19 17 25 25 O 1.42902 * 109.47095 * 65.32640 * 3 2 1 26 26 C 1.42902 * 113.99388 * 217.52459 * 25 3 2 27 27 H 1.08999 * 109.47186 * 183.04395 * 1 2 3 28 28 H 1.09001 * 109.47198 * 303.04037 * 1 2 3 29 29 H 1.08996 * 109.47397 * 63.04353 * 1 2 3 30 30 H 1.09002 * 109.47214 * 240.00111 * 2 1 3 31 31 H 1.09000 * 109.47112 * 120.00163 * 2 1 3 32 32 H 1.08997 * 109.47507 * 54.52424 * 5 3 2 33 33 H 1.09000 * 109.46782 * 294.52530 * 5 3 2 34 34 H 1.09001 * 113.47602 * 336.06750 * 7 6 5 35 35 H 1.09000 * 113.47030 * 106.53446 * 7 6 5 36 36 H 1.08999 * 114.16986 * 139.67129 * 8 7 6 37 37 H 1.09002 * 114.17076 * 272.37980 * 8 7 6 38 38 H 1.09003 * 109.47020 * 174.99574 * 11 9 6 39 39 H 1.08996 * 109.46899 * 295.00122 * 11 9 6 40 40 H 0.97001 * 119.99525 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47305 * 299.99500 * 15 13 12 42 42 H 1.09001 * 109.47270 * 59.99711 * 15 13 12 43 43 H 0.97007 * 120.00040 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.46357 * 174.04888 * 26 25 3 45 45 H 1.09001 * 109.46896 * 294.04571 * 26 25 3 46 46 H 1.09000 * 109.47274 * 54.04937 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6008 1.9831 -0.8385 5 6 3.5641 1.4446 -0.1339 6 7 4.0421 2.8274 -0.2656 7 6 3.5382 3.4449 -1.5065 8 6 4.9283 4.0684 -1.6949 9 6 5.3911 2.8659 -0.8605 10 1 5.6266 1.9863 -1.4597 11 6 6.4915 3.2080 0.1460 12 7 6.4327 2.2715 1.2711 13 6 7.3122 2.3816 2.2862 14 8 8.1528 3.2557 2.2682 15 6 7.2513 1.4187 3.4438 16 16 8.5533 1.8233 4.6344 17 6 8.2581 0.5780 5.8455 18 1 7.4567 -0.1322 5.7055 19 6 9.0550 0.5105 6.9799 20 7 10.0315 1.3765 7.1508 21 14 8.7426 -0.8101 8.2636 22 1 9.5399 -2.0188 7.9344 23 1 9.1407 -0.3038 9.6017 24 1 7.2988 -1.1574 8.2752 25 8 1.6684 2.0791 1.2243 26 6 1.2972 3.4512 1.0765 27 1 -0.3633 -1.0262 0.0546 28 1 -0.3634 0.5603 0.8615 29 1 -0.3634 0.4658 -0.9160 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8520 0.8749 -1.0174 33 1 4.0072 0.9898 0.7521 34 1 3.2792 2.7199 -2.2782 35 1 2.7518 4.1804 -1.3371 36 1 5.2850 4.0607 -2.7249 37 1 5.0565 5.0310 -1.1998 38 1 7.4645 3.1317 -0.3396 39 1 6.3464 4.2245 0.5114 40 1 5.7602 1.5726 1.2856 41 1 6.2783 1.4950 3.9291 42 1 7.3965 0.4020 3.0787 43 1 10.5887 1.3291 7.9434 44 1 0.9288 3.8323 2.0290 45 1 2.1658 4.0310 0.7646 46 1 0.5137 3.5366 0.3235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754474058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:12 Heat of formation + Delta-G solvation = -79.784678 kcal Electronic energy + Delta-G solvation = -24625.927658 eV Core-core repulsion = 21062.877733 eV Total energy + Delta-G solvation = -3563.049924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67714 -40.34484 -38.93879 -35.57696 -34.65033 -34.59129 -32.15483 -31.32602 -28.74745 -28.11551 -27.62803 -26.75699 -24.24530 -23.55715 -21.94250 -21.62109 -20.70709 -19.83408 -18.05765 -17.66535 -17.46216 -17.28940 -16.88687 -16.59567 -16.40850 -15.87860 -15.80288 -15.43118 -14.96526 -14.72386 -14.64066 -14.49049 -14.37139 -14.05817 -13.76973 -13.35454 -13.17922 -13.15540 -12.90429 -12.83136 -12.63480 -12.59373 -12.29061 -12.14678 -12.00316 -11.79589 -11.74947 -11.64782 -11.40367 -11.14847 -10.91965 -10.38105 -10.29863 -10.09141 -9.79338 -8.67808 -8.35271 -6.13690 1.25999 1.42173 1.45951 1.57218 1.60993 2.24700 2.28338 2.89964 2.96039 2.98624 3.30949 3.46654 3.74821 3.78540 3.93218 4.05345 4.12368 4.15160 4.25198 4.30149 4.39732 4.42410 4.44466 4.47157 4.49130 4.50714 4.66922 4.70139 4.76578 4.86280 4.86972 4.95077 5.00916 5.05146 5.09368 5.21379 5.22325 5.29155 5.40879 5.42024 5.49125 6.08412 6.19171 6.40580 6.47427 7.05704 7.22722 8.74126 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.002991 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.995985 B = 9358.809722 C =10860.175987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.094 3.906 4 H 0.073 0.927 5 C -0.005 4.005 6 N -0.480 5.480 7 C -0.002 4.002 8 C -0.126 4.126 9 C 0.019 3.981 10 H 0.102 0.898 11 C 0.138 3.862 12 N -0.706 5.706 13 C 0.532 3.468 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.147 6.147 17 C -0.548 4.548 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.259 1.259 25 O -0.398 6.398 26 C 0.032 3.968 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.408 0.592 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 -0.791 -23.486 31.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C 0.036 3.964 4 H 0.091 0.909 5 C -0.134 4.134 6 N -0.203 5.203 7 C -0.131 4.131 8 C -0.164 4.164 9 C -0.091 4.091 10 H 0.120 0.880 11 C 0.014 3.986 12 N -0.360 5.360 13 C 0.318 3.682 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.080 5.920 17 C -0.696 4.696 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.183 1.183 25 O -0.317 6.317 26 C -0.064 4.064 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.899 0.906 -22.595 30.122 hybrid contribution -0.876 -2.059 0.284 2.255 sum -20.775 -1.153 -22.311 30.507 Atomic orbital electron populations 1.21684 0.94983 1.02063 1.01767 1.21692 0.96983 0.94524 1.03140 1.22255 0.92445 0.94440 0.87235 0.90868 1.23336 0.96836 0.91102 1.02119 1.69052 1.03561 1.15930 1.31728 1.23811 0.98244 0.99343 0.91661 1.23146 0.95340 0.96992 1.00909 1.23777 0.89929 1.00923 0.94438 0.88008 1.21404 0.98595 0.92758 0.85849 1.45720 1.34207 1.35154 1.20914 1.20038 0.80722 0.84245 0.83236 1.90677 1.38101 1.36537 1.79174 1.23360 1.04559 1.02274 0.97863 1.85518 1.41183 1.45164 1.20100 1.23204 1.20917 1.17584 1.07903 0.90102 1.26140 0.93930 0.99087 0.99950 1.70185 1.18892 1.36774 1.28891 0.84940 0.79193 0.77349 0.76410 1.19117 1.20142 1.18335 1.87891 1.87187 1.24962 1.31681 1.22869 0.99160 0.82336 1.02038 0.92011 0.93529 0.92087 0.88992 0.92153 0.90953 0.91273 0.89436 0.89437 0.88101 0.89255 0.91568 0.92667 0.75537 0.87976 0.87422 0.91929 0.90600 0.93017 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.84 71.98 0.71 -1.07 16 2 C -0.13 -1.58 5.64 30.60 0.17 -1.40 16 3 C 0.09 1.34 2.18 30.60 0.07 1.41 16 4 H 0.07 0.83 6.60 -2.39 -0.02 0.82 16 5 C -0.01 -0.07 4.27 86.31 0.37 0.30 16 6 N -0.48 -7.36 4.86 -902.11 -4.38 -11.75 16 7 C 0.00 -0.02 6.07 83.57 0.51 0.48 16 8 C -0.13 -1.33 8.00 30.94 0.25 -1.08 16 9 C 0.02 0.28 3.25 42.19 0.14 0.41 16 10 H 0.10 1.16 7.60 -2.39 -0.02 1.14 16 11 C 0.14 3.25 5.82 86.38 0.50 3.75 16 12 N -0.71 -20.07 5.46 -463.06 -2.53 -22.60 16 13 C 0.53 21.20 7.85 87.66 0.69 21.89 16 14 O -0.57 -27.60 15.86 -3.03 -0.05 -27.65 16 15 C -0.13 -5.52 6.16 71.24 0.44 -5.08 16 16 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 17 C -0.55 -32.32 9.50 67.95 0.65 -31.67 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.80 5.49 84.86 0.47 1.26 16 20 N -0.91 -57.03 13.22 21.65 0.29 -56.74 16 21 Si 1.00 44.57 29.55 68.60 2.03 46.60 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 25 O -0.40 -8.18 9.81 -148.98 -1.46 -9.65 16 26 C 0.03 0.54 10.71 113.37 1.21 1.75 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.71 7.75 -2.39 -0.02 0.69 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.72 7.55 -2.39 -0.02 0.70 16 33 H 0.07 1.24 6.61 -2.39 -0.02 1.22 16 34 H 0.09 0.55 7.83 -2.39 -0.02 0.53 16 35 H 0.09 0.84 7.51 -2.39 -0.02 0.82 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 1.14 7.94 -2.39 -0.02 1.12 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.50 7.88 -2.39 -0.02 1.49 16 40 H 0.41 9.70 6.35 -92.71 -0.59 9.11 16 41 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 42 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 43 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 0.91 6.03 -2.39 -0.01 0.89 16 46 H 0.05 0.62 7.97 -2.39 -0.02 0.60 16 Total: -1.00 -78.68 382.47 -0.74 -79.42 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.37 Total: 21.04 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 6.16 Total: -9.04 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -6.63 Total: -91.09 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.51 Total: -37.30 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -78.68 -0.74 -79.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754474058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.364 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds