Wall clock time and date at job start Tue Mar 31 2020 11:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46981 * 2 1 4 4 H 1.08999 * 109.47162 * 55.00409 * 3 2 1 5 5 C 1.53003 * 109.46916 * 175.00323 * 3 2 1 6 6 N 1.46899 * 109.47052 * 185.64088 * 5 3 2 7 7 C 1.47482 * 110.99944 * 262.73548 * 6 5 3 8 8 C 1.53512 * 87.93098 * 221.29436 * 7 6 5 9 9 C 1.47485 * 111.00266 * 166.76381 * 6 5 3 10 10 H 1.08996 * 113.47241 * 23.87901 * 9 6 5 11 11 C 1.52997 * 113.47726 * 253.47138 * 9 6 5 12 12 N 1.46504 * 109.47313 * 54.99479 * 11 9 6 13 13 C 1.34772 * 120.00273 * 179.97438 * 12 11 9 14 14 O 1.21285 * 119.99705 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00266 * 180.02562 * 13 12 11 16 16 S 1.80995 * 109.47344 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00297 * 180.02562 * 16 15 13 18 18 H 1.08007 * 119.99808 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00442 * 179.72271 * 17 16 15 20 20 N 1.31625 * 119.99690 * 0.27662 * 19 17 16 21 21 Si 1.86802 * 120.00162 * 180.27220 * 19 17 16 22 22 H 1.48503 * 109.46580 * 90.00137 * 21 19 17 23 23 H 1.48502 * 109.46796 * 209.99927 * 21 19 17 24 24 H 1.48493 * 109.47186 * 330.00056 * 21 19 17 25 25 O 1.42900 * 109.47339 * 294.99942 * 3 2 1 26 26 C 1.42907 * 113.99875 * 142.40713 * 25 3 2 27 27 H 1.08995 * 109.47483 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47178 * 299.99578 * 1 2 3 29 29 H 1.09005 * 109.47494 * 59.99904 * 1 2 3 30 30 H 1.09003 * 109.47178 * 240.00422 * 2 1 3 31 31 H 1.08996 * 109.47020 * 120.00404 * 2 1 3 32 32 H 1.08997 * 109.47243 * 65.64153 * 5 3 2 33 33 H 1.08998 * 109.46985 * 305.63692 * 5 3 2 34 34 H 1.08993 * 113.47888 * 336.06299 * 7 6 5 35 35 H 1.09000 * 113.47453 * 106.53478 * 7 6 5 36 36 H 1.09000 * 114.17718 * 272.37411 * 8 7 6 37 37 H 1.09000 * 114.16589 * 139.67085 * 8 7 6 38 38 H 1.09001 * 109.47051 * 295.00202 * 11 9 6 39 39 H 1.09003 * 109.47034 * 174.99902 * 11 9 6 40 40 H 0.97001 * 119.99844 * 0.02562 * 12 11 9 41 41 H 1.09003 * 109.47355 * 60.00015 * 15 13 12 42 42 H 1.09003 * 109.47199 * 300.00482 * 15 13 12 43 43 H 0.97001 * 119.99976 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.46959 * 176.20197 * 26 25 3 45 45 H 1.08994 * 109.47049 * 296.19902 * 26 25 3 46 46 H 1.08999 * 109.47018 * 56.20210 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1256 6 7 4.0433 2.8265 0.2615 7 6 4.4912 3.3609 -1.0381 8 6 5.6776 4.0005 -0.3034 9 6 5.4521 2.8579 0.6967 10 1 6.0026 1.9498 0.4512 11 6 5.6299 3.2812 2.1561 12 7 4.8257 2.4115 3.0183 13 6 4.8266 2.5987 4.3530 14 8 5.4928 3.4874 4.8403 15 6 3.9999 1.7038 5.2399 16 16 4.2101 2.2047 6.9664 17 6 3.1653 1.0262 7.7564 18 1 2.6366 0.2920 7.1664 19 6 3.0257 1.0378 9.1373 20 7 3.6696 1.9328 9.8563 21 14 1.9239 -0.2165 9.9754 22 1 2.7182 -1.4245 10.3146 23 1 1.3611 0.3709 11.2177 24 1 0.8169 -0.5929 9.0600 25 8 1.6619 2.0814 -1.2210 26 6 1.2901 3.4528 -1.0685 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.0033 0.9939 -0.7648 33 1 3.8576 0.8705 1.0049 34 1 4.7856 2.5875 -1.7474 35 1 3.8035 4.0889 -1.4686 36 1 5.4715 4.9925 0.0985 37 1 6.6222 3.9405 -0.8440 38 1 5.3040 4.3143 2.2771 39 1 6.6806 3.1968 2.4335 40 1 4.2932 1.7006 2.6286 41 1 4.3258 0.6707 5.1187 42 1 2.9490 1.7881 4.9628 43 1 3.5723 1.9408 10.8214 44 1 1.0821 3.8839 -2.0478 45 1 0.3986 3.5204 -0.4451 46 1 2.1060 4.0001 -0.5965 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754474059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:15 Heat of formation + Delta-G solvation = -78.558370 kcal Electronic energy + Delta-G solvation = -24730.239212 eV Core-core repulsion = 21167.242465 eV Total energy + Delta-G solvation = -3562.996748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63660 -40.32274 -38.95864 -35.56733 -34.68789 -34.58442 -32.14807 -31.34941 -28.81486 -28.06177 -27.61028 -26.76184 -24.10049 -23.59009 -22.01940 -21.72940 -20.64723 -19.81441 -17.96935 -17.66903 -17.49249 -17.27125 -16.88008 -16.57097 -16.44372 -15.84915 -15.79902 -15.58916 -14.92922 -14.74062 -14.65335 -14.48932 -14.37360 -14.15722 -13.66009 -13.26867 -13.16827 -13.12883 -12.89211 -12.81655 -12.63430 -12.61652 -12.42816 -12.09597 -11.93159 -11.75672 -11.71914 -11.57250 -11.46437 -11.14285 -10.91991 -10.45314 -10.28086 -10.10229 -9.81687 -8.66889 -8.34607 -6.12814 1.26699 1.42528 1.46863 1.57410 1.61855 2.23852 2.28371 2.87566 2.93115 2.99547 3.32076 3.48897 3.77464 3.88981 3.92395 4.06314 4.09040 4.14206 4.27041 4.28116 4.35418 4.43436 4.47136 4.48223 4.55652 4.57077 4.67550 4.68719 4.78971 4.87464 4.88528 4.95184 5.01330 5.04933 5.11208 5.18703 5.23530 5.27969 5.41006 5.41673 5.48837 6.06486 6.19779 6.33355 6.47764 7.06604 7.23545 8.74694 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003147 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.315839 B = 8894.049204 C =10563.759783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.001 4.001 6 N -0.481 5.481 7 C 0.008 3.992 8 C -0.129 4.129 9 C 0.020 3.980 10 H 0.100 0.900 11 C 0.139 3.861 12 N -0.707 5.707 13 C 0.532 3.468 14 O -0.566 6.566 15 C -0.129 4.129 16 S -0.149 6.149 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.998 3.002 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.258 1.258 25 O -0.392 6.392 26 C 0.028 3.972 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.408 0.592 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.031 0.969 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -2.502 -28.109 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.039 3.961 4 H 0.075 0.925 5 C -0.130 4.130 6 N -0.204 5.204 7 C -0.121 4.121 8 C -0.167 4.167 9 C -0.089 4.089 10 H 0.118 0.882 11 C 0.015 3.985 12 N -0.361 5.361 13 C 0.317 3.683 14 O -0.445 6.445 15 C -0.280 4.280 16 S 0.078 5.922 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.182 1.182 25 O -0.311 6.311 26 C -0.069 4.069 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.245 0.755 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.050 0.950 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.217 -0.739 -26.957 26.994 hybrid contribution -0.996 -2.044 0.014 2.273 sum -2.213 -2.782 -26.943 27.177 Atomic orbital electron populations 1.21687 0.95422 1.02010 1.01494 1.21670 0.96677 0.94554 1.03230 1.22143 0.92943 0.93991 0.87021 0.92547 1.23299 0.96611 0.91011 1.02052 1.68885 1.17072 1.18085 1.16347 1.23841 0.96555 0.99768 0.91899 1.23190 0.99655 0.97727 0.96128 1.23692 0.91277 1.00725 0.93227 0.88219 1.21392 0.94974 0.93987 0.88163 1.45697 1.49283 1.36350 1.04721 1.20065 0.81131 0.83841 0.83220 1.90687 1.43949 1.34589 1.75241 1.23356 1.03265 1.02798 0.98584 1.85569 1.63231 1.46653 0.96734 1.23208 1.32213 1.18905 0.95175 0.89950 1.26125 0.97504 0.98432 0.97016 1.70182 1.42111 1.35518 1.06951 0.84958 0.78060 0.77475 0.77516 1.19232 1.20293 1.18186 1.87823 1.87109 1.24881 1.31321 1.22947 0.99027 0.82435 1.02467 0.91867 0.93411 0.92887 0.90908 0.89798 0.91734 0.89941 0.90234 0.89526 0.89032 0.88355 0.92465 0.91565 0.75512 0.87319 0.87654 0.91978 0.89106 0.94990 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.81 71.98 0.71 -1.56 16 2 C -0.12 -1.77 5.64 30.59 0.17 -1.60 16 3 C 0.10 1.59 2.45 30.59 0.07 1.66 16 4 H 0.06 1.09 7.73 -2.39 -0.02 1.07 16 5 C 0.00 -0.01 4.30 86.30 0.37 0.36 16 6 N -0.48 -7.38 4.90 -902.12 -4.42 -11.80 16 7 C 0.01 0.09 6.50 83.58 0.54 0.64 16 8 C -0.13 -1.47 8.00 30.94 0.25 -1.22 16 9 C 0.02 0.30 3.21 42.19 0.14 0.43 16 10 H 0.10 1.19 7.91 -2.39 -0.02 1.17 16 11 C 0.14 3.13 5.81 86.38 0.50 3.63 16 12 N -0.71 -18.67 5.46 -463.06 -2.53 -21.20 16 13 C 0.53 20.17 7.85 87.66 0.69 20.86 16 14 O -0.57 -26.78 15.86 -3.05 -0.05 -26.83 16 15 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 16 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 17 C -0.55 -31.44 9.50 67.95 0.65 -30.80 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 21 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 O -0.39 -6.98 9.51 -148.98 -1.42 -8.40 16 26 C 0.03 0.43 9.97 113.37 1.13 1.56 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.87 7.82 -2.38 -0.02 0.85 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.84 7.25 -2.39 -0.02 0.82 16 33 H 0.08 1.08 6.30 -2.39 -0.02 1.07 16 34 H 0.08 0.83 7.39 -2.39 -0.02 0.82 16 35 H 0.09 1.06 6.54 -2.39 -0.02 1.05 16 36 H 0.09 1.19 7.94 -2.39 -0.02 1.18 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 1.49 7.88 -2.39 -0.02 1.47 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.41 8.58 6.26 -92.71 -0.58 8.00 16 41 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.91 5.30 -2.39 -0.01 0.90 16 Total: -1.00 -75.53 380.94 -0.77 -76.29 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.38 Total: 21.30 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 6.12 Total: -9.56 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -6.67 Total: -88.96 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.47 Total: -35.23 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -75.53 -0.77 -76.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754474059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.265 kcal (2) G-P(sol) polarization free energy of solvation -75.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds