Wall clock time and date at job start Tue Mar 31 2020 11:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46891 * 109.47469 * 120.00121 * 2 1 3 5 5 C 1.46857 * 111.00121 * 55.78758 * 4 2 1 6 6 C 1.53034 * 109.52516 * 185.83795 * 5 4 2 7 7 C 1.53120 * 109.27861 * 300.82176 * 6 5 4 8 8 C 1.53123 * 109.16056 * 57.65680 * 7 6 5 9 9 C 1.53004 * 109.49970 * 182.40483 * 8 7 6 10 10 O 1.42898 * 109.47094 * 297.50105 * 9 8 7 11 11 N 1.46493 * 109.50780 * 62.28550 * 8 7 6 12 12 C 1.34769 * 120.00514 * 177.59791 * 11 8 7 13 13 O 1.21285 * 119.99608 * 4.95209 * 12 11 8 14 14 C 1.50699 * 120.00513 * 184.95337 * 12 11 8 15 15 S 1.81000 * 109.47301 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00109 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99897 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47043 * 90.00261 * 20 18 16 22 22 H 1.48506 * 109.47189 * 210.00129 * 20 18 16 23 23 H 1.48503 * 109.47230 * 330.00090 * 20 18 16 24 24 C 1.46848 * 111.00100 * 179.97438 * 4 2 1 25 25 H 1.08999 * 109.47487 * 59.99541 * 1 2 3 26 26 H 1.08996 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46866 * 299.99867 * 1 2 3 28 28 H 1.09004 * 109.46866 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.46665 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46645 * 300.00087 * 3 2 1 31 31 H 1.08995 * 109.47188 * 60.00606 * 3 2 1 32 32 H 1.08999 * 109.45748 * 305.85527 * 5 4 2 33 33 H 1.09000 * 109.45883 * 65.82283 * 5 4 2 34 34 H 1.09002 * 109.50449 * 60.76060 * 6 5 4 35 35 H 1.08993 * 109.50457 * 180.83810 * 6 5 4 36 36 H 1.08997 * 109.52437 * 297.74811 * 7 6 5 37 37 H 1.09006 * 109.52179 * 177.55692 * 7 6 5 38 38 H 1.09001 * 109.47098 * 57.50494 * 9 8 7 39 39 H 1.08999 * 109.46773 * 177.50311 * 9 8 7 40 40 H 0.96700 * 114.00115 * 179.97438 * 10 9 8 41 41 H 0.97004 * 119.99777 * 357.59835 * 11 8 7 42 42 H 1.09003 * 109.46598 * 299.99609 * 14 12 11 43 43 H 1.08992 * 109.47414 * 59.99825 * 14 12 11 44 44 H 0.97000 * 119.99353 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46062 * 54.14937 * 24 4 2 46 46 H 1.08996 * 109.46496 * 294.17880 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4684 -2.0509 1.2847 6 6 1.8812 -2.6879 2.6136 7 6 3.4094 -2.7307 2.7005 8 6 3.9608 -1.3090 2.5606 9 6 5.4900 -1.3495 2.5863 10 8 5.9319 -1.8572 3.8468 11 7 3.4738 -0.4842 3.6689 12 6 3.8717 0.7987 3.7798 13 8 4.5602 1.2969 2.9145 14 6 3.4612 1.6141 4.9787 15 16 4.1464 3.2834 4.8365 16 6 3.5280 3.9959 6.3246 17 1 2.9207 3.4051 6.9944 18 6 3.8213 5.3163 6.6360 19 7 4.5611 6.0364 5.8193 20 14 3.1663 6.0714 8.2140 21 1 4.1453 5.8557 9.3096 22 1 2.9577 7.5284 8.0162 23 1 1.8750 5.4305 8.5707 24 6 3.4877 -0.7125 1.2329 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6768 1.9563 0.8900 32 1 0.3810 -2.0058 1.2258 33 1 1.8522 -2.6511 0.4596 34 1 1.4862 -2.0958 3.4391 35 1 1.4844 -3.7014 2.6701 36 1 3.8026 -3.3546 1.8979 37 1 3.7079 -3.1439 3.6640 38 1 5.8498 -1.9977 1.7872 39 1 5.8826 -0.3429 2.4422 40 1 6.8935 -1.9112 3.9339 41 1 2.8650 -0.8613 4.3232 42 1 2.3736 1.6709 5.0243 43 1 3.8387 1.1421 5.8857 44 1 4.7657 6.9592 6.0369 45 1 3.8671 0.3048 1.1365 46 1 3.8616 -1.3192 0.4081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754852329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:53 Heat of formation + Delta-G solvation = -84.143773 kcal Electronic energy + Delta-G solvation = -26028.541589 eV Core-core repulsion = 22465.302640 eV Total energy + Delta-G solvation = -3563.238949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53217 -38.26950 -36.81545 -35.24510 -33.00990 -32.36324 -31.22459 -30.56367 -28.39568 -27.46725 -25.49625 -25.40720 -24.24610 -22.06302 -20.71492 -20.07650 -19.01014 -17.79639 -17.31434 -16.68203 -16.16891 -15.75642 -15.07875 -14.88126 -14.74843 -14.51071 -14.17602 -14.05868 -13.77747 -13.60296 -13.36116 -13.00540 -12.90523 -12.70667 -12.43449 -12.22347 -12.12762 -11.76069 -11.67322 -11.64633 -11.21682 -11.04765 -11.01546 -10.95416 -10.91051 -10.69993 -10.54816 -10.24225 -10.00045 -9.73238 -9.00511 -8.95767 -8.58921 -8.27486 -8.14000 -6.40317 -6.15727 -3.84206 3.14916 3.26166 3.31964 3.32555 3.37792 3.64346 3.90261 4.27225 4.28876 4.58325 4.65545 4.79291 4.94222 4.98525 5.18973 5.19581 5.23065 5.27247 5.31321 5.34054 5.42116 5.44845 5.48528 5.59329 5.64907 5.70284 5.78121 5.84569 5.88063 5.90351 5.95393 5.98030 6.06411 6.10302 6.20495 6.23176 6.30364 6.46674 6.86873 7.09660 7.15124 7.64893 7.66005 7.99809 8.41764 8.85548 9.30028 10.91709 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003841 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.967115 B = 7288.627325 C = 8149.305160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 C -0.147 4.147 4 N -0.522 5.522 5 C 0.049 3.951 6 C -0.118 4.118 7 C -0.120 4.120 8 C 0.194 3.806 9 C 0.062 3.938 10 O -0.565 6.565 11 N -0.704 5.704 12 C 0.546 3.454 13 O -0.527 6.527 14 C -0.151 4.151 15 S -0.059 6.059 16 C -0.533 4.533 17 H 0.071 0.929 18 C 0.074 3.926 19 N -0.869 5.869 20 Si 0.916 3.084 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.040 3.960 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.377 0.623 41 H 0.396 0.604 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.267 0.733 45 H 0.111 0.889 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -19.525 -10.430 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 C -0.204 4.204 4 N -0.247 5.247 5 C -0.078 4.078 6 C -0.156 4.156 7 C -0.158 4.158 8 C 0.107 3.893 9 C -0.018 4.018 10 O -0.369 6.369 11 N -0.357 5.357 12 C 0.332 3.668 13 O -0.403 6.403 14 C -0.302 4.302 15 S 0.168 5.832 16 C -0.681 4.681 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.505 5.505 20 Si 0.743 3.257 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.088 4.088 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.224 0.776 41 H 0.231 0.769 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.129 0.871 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.288 -18.293 -11.397 21.975 hybrid contribution -0.593 -0.743 1.483 1.761 sum -4.881 -19.036 -9.914 22.011 Atomic orbital electron populations 1.21920 0.94479 1.01544 1.02445 1.21569 0.95414 0.95476 0.90201 1.21886 1.01619 0.94610 1.02334 1.61813 1.07456 1.16244 1.39188 1.22198 1.00240 0.88837 0.96571 1.21608 0.95481 1.00331 0.98140 1.21806 0.95692 0.95026 1.03261 1.20158 0.91395 0.90447 0.87337 1.22572 0.94431 0.99495 0.85271 1.86426 1.27004 1.87649 1.35869 1.45640 1.50085 1.11418 1.28565 1.20040 0.78840 0.80927 0.86953 1.90577 1.38042 1.70500 1.41198 1.23506 1.04699 1.03626 0.98373 1.85273 1.68007 0.99337 1.30618 1.22891 1.37826 0.99787 1.07637 0.91075 1.24965 0.94950 0.96021 0.97597 1.70025 1.35558 1.08930 1.35961 0.86203 0.79193 0.78228 0.82086 1.20327 1.20813 1.19719 1.22554 0.87816 1.03818 0.94649 0.92332 0.92813 0.91507 0.94858 0.92135 0.92575 0.91210 0.90277 0.95419 0.90877 0.91389 0.91234 0.90266 0.93839 0.90747 0.77647 0.76942 0.89585 0.89591 0.92313 0.87134 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.84 37.16 0.33 -1.10 16 2 C 0.08 0.92 2.68 -67.71 -0.18 0.74 16 3 C -0.15 -1.91 8.97 37.16 0.33 -1.58 16 4 N -0.52 -6.24 4.38 -226.68 -0.99 -7.23 16 5 C 0.05 0.48 5.13 -3.83 -0.02 0.46 16 6 C -0.12 -1.06 5.91 -26.65 -0.16 -1.21 16 7 C -0.12 -1.19 4.69 -26.61 -0.12 -1.31 16 8 C 0.19 2.43 0.45 -131.73 -0.06 2.37 16 9 C 0.06 0.78 5.65 37.16 0.21 0.99 16 10 O -0.56 -7.08 12.96 -35.23 -0.46 -7.53 16 11 N -0.70 -10.19 4.53 -47.53 -0.22 -10.41 16 12 C 0.55 10.29 7.26 -10.99 -0.08 10.21 16 13 O -0.53 -11.31 12.13 5.55 0.07 -11.24 16 14 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 20 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.04 0.52 3.81 -3.83 -0.01 0.51 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.46 6.21 -51.93 -0.32 0.14 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.86 6.28 -51.93 -0.33 0.54 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.71 5.90 -51.93 -0.31 0.40 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.71 7.00 -51.93 -0.36 0.35 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.82 7.83 -51.93 -0.41 0.41 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.16 6.24 -51.93 -0.32 0.84 16 40 H 0.38 3.28 9.12 45.56 0.42 3.70 16 41 H 0.40 5.09 7.40 -40.82 -0.30 4.79 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.11 1.76 4.04 -51.93 -0.21 1.55 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -33.78 367.05 -8.68 -42.46 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.76 Total: 7.25 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.65 Total: -5.99 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.47 Total: -43.35 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.39 Total: -18.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.78 -8.68 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754852329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.687 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds