Wall clock time and date at job start Tue Mar 31 2020 11:17:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.47074 * 2 1
4 4 N 1.46891 * 109.47469 * 120.00121 * 2 1 3
5 5 C 1.46857 * 111.00121 * 55.78758 * 4 2 1
6 6 C 1.53034 * 109.52516 * 185.83795 * 5 4 2
7 7 C 1.53120 * 109.27861 * 300.82176 * 6 5 4
8 8 C 1.53123 * 109.16056 * 57.65680 * 7 6 5
9 9 C 1.53004 * 109.49970 * 182.40483 * 8 7 6
10 10 O 1.42898 * 109.47094 * 297.50105 * 9 8 7
11 11 N 1.46493 * 109.50780 * 62.28550 * 8 7 6
12 12 C 1.34769 * 120.00514 * 177.59791 * 11 8 7
13 13 O 1.21285 * 119.99608 * 4.95209 * 12 11 8
14 14 C 1.50699 * 120.00513 * 184.95337 * 12 11 8
15 15 S 1.81000 * 109.47301 * 180.02562 * 14 12 11
16 16 C 1.76200 * 100.00109 * 179.97438 * 15 14 12
17 17 H 1.08006 * 119.99866 * 359.97438 * 16 15 14
18 18 C 1.38795 * 120.00099 * 179.97438 * 16 15 14
19 19 N 1.31635 * 119.99897 * 0.02562 * 18 16 15
20 20 Si 1.86801 * 120.00061 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.47043 * 90.00261 * 20 18 16
22 22 H 1.48506 * 109.47189 * 210.00129 * 20 18 16
23 23 H 1.48503 * 109.47230 * 330.00090 * 20 18 16
24 24 C 1.46848 * 111.00100 * 179.97438 * 4 2 1
25 25 H 1.08999 * 109.47487 * 59.99541 * 1 2 3
26 26 H 1.08996 * 109.47144 * 180.02562 * 1 2 3
27 27 H 1.09004 * 109.46866 * 299.99867 * 1 2 3
28 28 H 1.09004 * 109.46866 * 240.00133 * 2 1 3
29 29 H 1.08998 * 109.46665 * 180.02562 * 3 2 1
30 30 H 1.09006 * 109.46645 * 300.00087 * 3 2 1
31 31 H 1.08995 * 109.47188 * 60.00606 * 3 2 1
32 32 H 1.08999 * 109.45748 * 305.85527 * 5 4 2
33 33 H 1.09000 * 109.45883 * 65.82283 * 5 4 2
34 34 H 1.09002 * 109.50449 * 60.76060 * 6 5 4
35 35 H 1.08993 * 109.50457 * 180.83810 * 6 5 4
36 36 H 1.08997 * 109.52437 * 297.74811 * 7 6 5
37 37 H 1.09006 * 109.52179 * 177.55692 * 7 6 5
38 38 H 1.09001 * 109.47098 * 57.50494 * 9 8 7
39 39 H 1.08999 * 109.46773 * 177.50311 * 9 8 7
40 40 H 0.96700 * 114.00115 * 179.97438 * 10 9 8
41 41 H 0.97004 * 119.99777 * 357.59835 * 11 8 7
42 42 H 1.09003 * 109.46598 * 299.99609 * 14 12 11
43 43 H 1.08992 * 109.47414 * 59.99825 * 14 12 11
44 44 H 0.97000 * 119.99353 * 179.97438 * 19 18 16
45 45 H 1.09003 * 109.46062 * 54.14937 * 24 4 2
46 46 H 1.08996 * 109.46496 * 294.17880 * 24 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1993
5 6 1.4684 -2.0509 1.2847
6 6 1.8812 -2.6879 2.6136
7 6 3.4094 -2.7307 2.7005
8 6 3.9608 -1.3090 2.5606
9 6 5.4900 -1.3495 2.5863
10 8 5.9319 -1.8572 3.8468
11 7 3.4738 -0.4842 3.6689
12 6 3.8717 0.7987 3.7798
13 8 4.5602 1.2969 2.9145
14 6 3.4612 1.6141 4.9787
15 16 4.1464 3.2834 4.8365
16 6 3.5280 3.9959 6.3246
17 1 2.9207 3.4051 6.9944
18 6 3.8213 5.3163 6.6360
19 7 4.5611 6.0364 5.8193
20 14 3.1663 6.0714 8.2140
21 1 4.1453 5.8557 9.3096
22 1 2.9577 7.5284 8.0162
23 1 1.8750 5.4305 8.5707
24 6 3.4877 -0.7125 1.2329
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 1.8933 -0.5138 -0.8900
29 1 3.1300 1.4425 -0.0005
30 1 1.6766 1.9563 -0.8901
31 1 1.6768 1.9563 0.8900
32 1 0.3810 -2.0058 1.2258
33 1 1.8522 -2.6511 0.4596
34 1 1.4862 -2.0958 3.4391
35 1 1.4844 -3.7014 2.6701
36 1 3.8026 -3.3546 1.8979
37 1 3.7079 -3.1439 3.6640
38 1 5.8498 -1.9977 1.7872
39 1 5.8826 -0.3429 2.4422
40 1 6.8935 -1.9112 3.9339
41 1 2.8650 -0.8613 4.3232
42 1 2.3736 1.6709 5.0243
43 1 3.8387 1.1421 5.8857
44 1 4.7657 6.9592 6.0369
45 1 3.8671 0.3048 1.1365
46 1 3.8616 -1.3192 0.4081
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754852329.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:52
Heat of formation + Delta-G solvation = -110.652531 kcal
Electronic energy + Delta-G solvation = -26029.691095 eV
Core-core repulsion = 22465.302640 eV
Total energy + Delta-G solvation = -3564.388455 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.161 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.63452 -39.49248 -37.87635 -36.23252 -34.57409 -34.13485 -32.35136 -31.51443
-29.89186 -28.43323 -27.62744 -26.40923 -25.14984 -23.05392 -21.91814 -20.99373
-20.16257 -19.80445 -18.29272 -17.95192 -17.24971 -17.01012 -16.86755 -16.38035
-15.94400 -15.83628 -15.46399 -15.15608 -14.89792 -14.66046 -14.59915 -14.32484
-14.21403 -13.83803 -13.60570 -13.33934 -13.15541 -13.14213 -12.94324 -12.86629
-12.74501 -12.58512 -12.52085 -12.09656 -11.96748 -11.76217 -11.67465 -11.38404
-11.22894 -11.13057 -11.03660 -10.36599 -10.23645 -9.85687 -9.16272 -8.61672
-8.33366 -6.09568 1.29439 1.42090 1.48192 1.59885 1.81393 2.28029
2.38386 2.80569 3.00487 3.34728 3.40127 3.69041 3.79766 3.97970
4.03325 4.09327 4.13322 4.32709 4.34606 4.39113 4.41605 4.46282
4.51639 4.55143 4.59125 4.63959 4.76013 4.79998 4.85923 4.88550
4.98555 5.02756 5.04122 5.11974 5.27905 5.32546 5.35280 5.42627
5.44472 5.68991 6.17558 6.20955 6.29839 6.69769 6.83615 7.08068
7.43222 8.75803
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.015197 B = 0.003841 C = 0.003435
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1841.967115 B = 7288.627325 C = 8149.305160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.082 3.918
3 C -0.142 4.142
4 N -0.538 5.538
5 C 0.048 3.952
6 C -0.114 4.114
7 C -0.110 4.110
8 C 0.189 3.811
9 C 0.064 3.936
10 O -0.576 6.576
11 N -0.684 5.684
12 C 0.546 3.454
13 O -0.557 6.557
14 C -0.129 4.129
15 S -0.138 6.138
16 C -0.548 4.548
17 H 0.077 0.923
18 C 0.016 3.984
19 N -0.911 5.911
20 Si 0.996 3.004
21 H -0.267 1.267
22 H -0.276 1.276
23 H -0.260 1.260
24 C 0.045 3.955
25 H 0.069 0.931
26 H 0.071 0.929
27 H 0.050 0.950
28 H 0.045 0.955
29 H 0.040 0.960
30 H 0.071 0.929
31 H 0.038 0.962
32 H 0.089 0.911
33 H 0.039 0.961
34 H 0.064 0.936
35 H 0.094 0.906
36 H 0.087 0.913
37 H 0.079 0.921
38 H 0.071 0.929
39 H 0.038 0.962
40 H 0.393 0.607
41 H 0.406 0.594
42 H 0.097 0.903
43 H 0.097 0.903
44 H 0.271 0.729
45 H 0.074 0.926
46 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.306 -22.110 -9.939 25.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.026 4.026
3 C -0.200 4.200
4 N -0.263 5.263
5 C -0.079 4.079
6 C -0.152 4.152
7 C -0.148 4.148
8 C 0.102 3.898
9 C -0.015 4.015
10 O -0.383 6.383
11 N -0.336 5.336
12 C 0.332 3.668
13 O -0.436 6.436
14 C -0.280 4.280
15 S 0.089 5.911
16 C -0.696 4.696
17 H 0.095 0.905
18 C -0.189 4.189
19 N -0.547 5.547
20 Si 0.818 3.182
21 H -0.193 1.193
22 H -0.201 1.201
23 H -0.184 1.184
24 C -0.084 4.084
25 H 0.088 0.912
26 H 0.090 0.910
27 H 0.069 0.931
28 H 0.062 0.938
29 H 0.059 0.941
30 H 0.090 0.910
31 H 0.057 0.943
32 H 0.107 0.893
33 H 0.057 0.943
34 H 0.082 0.918
35 H 0.112 0.888
36 H 0.105 0.895
37 H 0.098 0.902
38 H 0.089 0.911
39 H 0.056 0.944
40 H 0.242 0.758
41 H 0.243 0.757
42 H 0.115 0.885
43 H 0.115 0.885
44 H 0.080 0.920
45 H 0.093 0.907
46 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -5.897 -20.932 -10.904 24.327
hybrid contribution -0.067 -0.029 1.260 1.263
sum -5.964 -20.961 -9.644 23.831
Atomic orbital electron populations
1.21867 0.92999 1.02626 1.02211 1.21572 0.96481 0.93968 0.90538
1.21832 1.00279 0.96341 1.01516 1.61803 1.06775 1.18058 1.39686
1.22293 1.00747 0.87477 0.97359 1.21622 0.94621 1.01608 0.97362
1.21766 0.96366 0.92718 1.03957 1.20416 0.91497 0.91687 0.86198
1.22493 0.94531 0.98183 0.86294 1.86376 1.28708 1.87371 1.35841
1.45456 1.49101 1.09886 1.29159 1.19693 0.78989 0.82179 0.85972
1.90588 1.39597 1.71449 1.41958 1.23352 1.04818 0.99720 1.00149
1.85396 1.69508 1.04721 1.31463 1.23215 1.38096 1.00520 1.07804
0.90450 1.26076 0.94914 0.96401 1.01507 1.70181 1.36897 1.09408
1.38259 0.84994 0.78942 0.77269 0.77026 1.19264 1.20121 1.18399
1.22378 0.88700 1.01996 0.95303 0.91230 0.91006 0.93104 0.93759
0.94139 0.91016 0.94271 0.89290 0.94298 0.91764 0.88771 0.89476
0.90217 0.91072 0.94379 0.75847 0.75745 0.88472 0.88477 0.92020
0.90729 0.93604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.48 8.84 71.98 0.64 -1.84 16
2 C 0.08 1.78 2.68 44.92 0.12 1.90 16
3 C -0.14 -3.85 8.97 71.98 0.65 -3.21 16
4 N -0.54 -12.18 4.38 -871.09 -3.81 -15.99 16
5 C 0.05 0.78 5.13 86.32 0.44 1.23 16
6 C -0.11 -1.65 5.91 30.65 0.18 -1.47 16
7 C -0.11 -1.84 4.69 30.68 0.14 -1.69 16
8 C 0.19 4.49 0.45 3.66 0.00 4.49 16
9 C 0.06 1.59 5.65 71.98 0.41 2.00 16
10 O -0.58 -13.69 12.96 -148.98 -1.93 -15.62 16
11 N -0.68 -19.37 4.53 -422.68 -1.91 -21.29 16
12 C 0.55 21.05 7.26 87.66 0.64 21.69 16
13 O -0.56 -25.16 12.13 -3.05 -0.04 -25.20 16
14 C -0.13 -5.51 6.16 71.24 0.44 -5.07 16
15 S -0.14 -7.86 20.57 -56.49 -1.16 -9.02 16
16 C -0.55 -32.29 9.50 67.95 0.65 -31.64 16
17 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16
18 C 0.02 0.92 5.49 84.86 0.47 1.38 16
19 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16
20 Si 1.00 44.58 29.55 68.60 2.03 46.61 16
21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16
23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
24 C 0.05 1.14 3.81 86.33 0.33 1.47 16
25 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16
26 H 0.07 1.01 6.21 -2.39 -0.01 1.00 16
27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.04 1.24 6.28 -2.39 -0.02 1.22 16
30 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16
31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.09 1.29 5.90 -2.39 -0.01 1.27 16
33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16
34 H 0.06 1.06 7.00 -2.39 -0.02 1.04 16
35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
37 H 0.08 1.38 7.83 -2.38 -0.02 1.36 16
38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
39 H 0.04 1.23 6.24 -2.39 -0.01 1.22 16
40 H 0.39 6.41 9.12 -74.06 -0.68 5.73 16
41 H 0.41 9.84 7.40 -92.71 -0.69 9.16 16
42 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16
43 H 0.10 3.90 8.14 -2.40 -0.02 3.88 16
44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16
45 H 0.07 2.49 4.04 -2.39 -0.01 2.48 16
46 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
Total: -1.00 -76.08 367.05 -1.82 -77.90
By element:
Atomic # 1 Polarization: 30.22 SS G_CDS: -0.37 Total: 29.85 kcal
Atomic # 6 Polarization: -15.86 SS G_CDS: 5.09 Total: -10.76 kcal
Atomic # 7 Polarization: -88.31 SS G_CDS: -5.44 Total: -93.75 kcal
Atomic # 8 Polarization: -38.85 SS G_CDS: -1.97 Total: -40.82 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal
Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal
Total: -76.08 -1.82 -77.90 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754852329.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.753 kcal
(2) G-P(sol) polarization free energy of solvation -76.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.899 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds