Wall clock time and date at job start Tue Mar 31 2020 11:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47074 * 2 1 4 4 N 1.46891 * 109.47469 * 120.00121 * 2 1 3 5 5 C 1.46857 * 111.00121 * 55.78758 * 4 2 1 6 6 C 1.53034 * 109.52516 * 185.83795 * 5 4 2 7 7 C 1.53120 * 109.27861 * 300.82176 * 6 5 4 8 8 C 1.53123 * 109.16056 * 57.65680 * 7 6 5 9 9 C 1.53004 * 109.49970 * 182.40483 * 8 7 6 10 10 O 1.42898 * 109.47094 * 297.50105 * 9 8 7 11 11 N 1.46493 * 109.50780 * 62.28550 * 8 7 6 12 12 C 1.34769 * 120.00514 * 177.59791 * 11 8 7 13 13 O 1.21285 * 119.99608 * 4.95209 * 12 11 8 14 14 C 1.50699 * 120.00513 * 184.95337 * 12 11 8 15 15 S 1.81000 * 109.47301 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00109 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.38795 * 120.00099 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99897 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47043 * 90.00261 * 20 18 16 22 22 H 1.48506 * 109.47189 * 210.00129 * 20 18 16 23 23 H 1.48503 * 109.47230 * 330.00090 * 20 18 16 24 24 C 1.46848 * 111.00100 * 179.97438 * 4 2 1 25 25 H 1.08999 * 109.47487 * 59.99541 * 1 2 3 26 26 H 1.08996 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46866 * 299.99867 * 1 2 3 28 28 H 1.09004 * 109.46866 * 240.00133 * 2 1 3 29 29 H 1.08998 * 109.46665 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46645 * 300.00087 * 3 2 1 31 31 H 1.08995 * 109.47188 * 60.00606 * 3 2 1 32 32 H 1.08999 * 109.45748 * 305.85527 * 5 4 2 33 33 H 1.09000 * 109.45883 * 65.82283 * 5 4 2 34 34 H 1.09002 * 109.50449 * 60.76060 * 6 5 4 35 35 H 1.08993 * 109.50457 * 180.83810 * 6 5 4 36 36 H 1.08997 * 109.52437 * 297.74811 * 7 6 5 37 37 H 1.09006 * 109.52179 * 177.55692 * 7 6 5 38 38 H 1.09001 * 109.47098 * 57.50494 * 9 8 7 39 39 H 1.08999 * 109.46773 * 177.50311 * 9 8 7 40 40 H 0.96700 * 114.00115 * 179.97438 * 10 9 8 41 41 H 0.97004 * 119.99777 * 357.59835 * 11 8 7 42 42 H 1.09003 * 109.46598 * 299.99609 * 14 12 11 43 43 H 1.08992 * 109.47414 * 59.99825 * 14 12 11 44 44 H 0.97000 * 119.99353 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.46062 * 54.14937 * 24 4 2 46 46 H 1.08996 * 109.46496 * 294.17880 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4684 -2.0509 1.2847 6 6 1.8812 -2.6879 2.6136 7 6 3.4094 -2.7307 2.7005 8 6 3.9608 -1.3090 2.5606 9 6 5.4900 -1.3495 2.5863 10 8 5.9319 -1.8572 3.8468 11 7 3.4738 -0.4842 3.6689 12 6 3.8717 0.7987 3.7798 13 8 4.5602 1.2969 2.9145 14 6 3.4612 1.6141 4.9787 15 16 4.1464 3.2834 4.8365 16 6 3.5280 3.9959 6.3246 17 1 2.9207 3.4051 6.9944 18 6 3.8213 5.3163 6.6360 19 7 4.5611 6.0364 5.8193 20 14 3.1663 6.0714 8.2140 21 1 4.1453 5.8557 9.3096 22 1 2.9577 7.5284 8.0162 23 1 1.8750 5.4305 8.5707 24 6 3.4877 -0.7125 1.2329 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6768 1.9563 0.8900 32 1 0.3810 -2.0058 1.2258 33 1 1.8522 -2.6511 0.4596 34 1 1.4862 -2.0958 3.4391 35 1 1.4844 -3.7014 2.6701 36 1 3.8026 -3.3546 1.8979 37 1 3.7079 -3.1439 3.6640 38 1 5.8498 -1.9977 1.7872 39 1 5.8826 -0.3429 2.4422 40 1 6.8935 -1.9112 3.9339 41 1 2.8650 -0.8613 4.3232 42 1 2.3736 1.6709 5.0243 43 1 3.8387 1.1421 5.8857 44 1 4.7657 6.9592 6.0369 45 1 3.8671 0.3048 1.1365 46 1 3.8616 -1.3192 0.4081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754852329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:52 Heat of formation + Delta-G solvation = -110.652531 kcal Electronic energy + Delta-G solvation = -26029.691095 eV Core-core repulsion = 22465.302640 eV Total energy + Delta-G solvation = -3564.388455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63452 -39.49248 -37.87635 -36.23252 -34.57409 -34.13485 -32.35136 -31.51443 -29.89186 -28.43323 -27.62744 -26.40923 -25.14984 -23.05392 -21.91814 -20.99373 -20.16257 -19.80445 -18.29272 -17.95192 -17.24971 -17.01012 -16.86755 -16.38035 -15.94400 -15.83628 -15.46399 -15.15608 -14.89792 -14.66046 -14.59915 -14.32484 -14.21403 -13.83803 -13.60570 -13.33934 -13.15541 -13.14213 -12.94324 -12.86629 -12.74501 -12.58512 -12.52085 -12.09656 -11.96748 -11.76217 -11.67465 -11.38404 -11.22894 -11.13057 -11.03660 -10.36599 -10.23645 -9.85687 -9.16272 -8.61672 -8.33366 -6.09568 1.29439 1.42090 1.48192 1.59885 1.81393 2.28029 2.38386 2.80569 3.00487 3.34728 3.40127 3.69041 3.79766 3.97970 4.03325 4.09327 4.13322 4.32709 4.34606 4.39113 4.41605 4.46282 4.51639 4.55143 4.59125 4.63959 4.76013 4.79998 4.85923 4.88550 4.98555 5.02756 5.04122 5.11974 5.27905 5.32546 5.35280 5.42627 5.44472 5.68991 6.17558 6.20955 6.29839 6.69769 6.83615 7.08068 7.43222 8.75803 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003841 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.967115 B = 7288.627325 C = 8149.305160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 C -0.142 4.142 4 N -0.538 5.538 5 C 0.048 3.952 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.189 3.811 9 C 0.064 3.936 10 O -0.576 6.576 11 N -0.684 5.684 12 C 0.546 3.454 13 O -0.557 6.557 14 C -0.129 4.129 15 S -0.138 6.138 16 C -0.548 4.548 17 H 0.077 0.923 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.260 1.260 24 C 0.045 3.955 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.393 0.607 41 H 0.406 0.594 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.074 0.926 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -22.110 -9.939 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.200 4.200 4 N -0.263 5.263 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.148 4.148 8 C 0.102 3.898 9 C -0.015 4.015 10 O -0.383 6.383 11 N -0.336 5.336 12 C 0.332 3.668 13 O -0.436 6.436 14 C -0.280 4.280 15 S 0.089 5.911 16 C -0.696 4.696 17 H 0.095 0.905 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.818 3.182 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.084 4.084 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.242 0.758 41 H 0.243 0.757 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.897 -20.932 -10.904 24.327 hybrid contribution -0.067 -0.029 1.260 1.263 sum -5.964 -20.961 -9.644 23.831 Atomic orbital electron populations 1.21867 0.92999 1.02626 1.02211 1.21572 0.96481 0.93968 0.90538 1.21832 1.00279 0.96341 1.01516 1.61803 1.06775 1.18058 1.39686 1.22293 1.00747 0.87477 0.97359 1.21622 0.94621 1.01608 0.97362 1.21766 0.96366 0.92718 1.03957 1.20416 0.91497 0.91687 0.86198 1.22493 0.94531 0.98183 0.86294 1.86376 1.28708 1.87371 1.35841 1.45456 1.49101 1.09886 1.29159 1.19693 0.78989 0.82179 0.85972 1.90588 1.39597 1.71449 1.41958 1.23352 1.04818 0.99720 1.00149 1.85396 1.69508 1.04721 1.31463 1.23215 1.38096 1.00520 1.07804 0.90450 1.26076 0.94914 0.96401 1.01507 1.70181 1.36897 1.09408 1.38259 0.84994 0.78942 0.77269 0.77026 1.19264 1.20121 1.18399 1.22378 0.88700 1.01996 0.95303 0.91230 0.91006 0.93104 0.93759 0.94139 0.91016 0.94271 0.89290 0.94298 0.91764 0.88771 0.89476 0.90217 0.91072 0.94379 0.75847 0.75745 0.88472 0.88477 0.92020 0.90729 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.84 71.98 0.64 -1.84 16 2 C 0.08 1.78 2.68 44.92 0.12 1.90 16 3 C -0.14 -3.85 8.97 71.98 0.65 -3.21 16 4 N -0.54 -12.18 4.38 -871.09 -3.81 -15.99 16 5 C 0.05 0.78 5.13 86.32 0.44 1.23 16 6 C -0.11 -1.65 5.91 30.65 0.18 -1.47 16 7 C -0.11 -1.84 4.69 30.68 0.14 -1.69 16 8 C 0.19 4.49 0.45 3.66 0.00 4.49 16 9 C 0.06 1.59 5.65 71.98 0.41 2.00 16 10 O -0.58 -13.69 12.96 -148.98 -1.93 -15.62 16 11 N -0.68 -19.37 4.53 -422.68 -1.91 -21.29 16 12 C 0.55 21.05 7.26 87.66 0.64 21.69 16 13 O -0.56 -25.16 12.13 -3.05 -0.04 -25.20 16 14 C -0.13 -5.51 6.16 71.24 0.44 -5.07 16 15 S -0.14 -7.86 20.57 -56.49 -1.16 -9.02 16 16 C -0.55 -32.29 9.50 67.95 0.65 -31.64 16 17 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 18 C 0.02 0.92 5.49 84.86 0.47 1.38 16 19 N -0.91 -56.76 13.22 21.65 0.29 -56.47 16 20 Si 1.00 44.58 29.55 68.60 2.03 46.61 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 C 0.05 1.14 3.81 86.33 0.33 1.47 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.01 6.21 -2.39 -0.01 1.00 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 1.24 6.28 -2.39 -0.02 1.22 16 30 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.29 5.90 -2.39 -0.01 1.27 16 33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 1.06 7.00 -2.39 -0.02 1.04 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.38 7.83 -2.38 -0.02 1.36 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.23 6.24 -2.39 -0.01 1.22 16 40 H 0.39 6.41 9.12 -74.06 -0.68 5.73 16 41 H 0.41 9.84 7.40 -92.71 -0.69 9.16 16 42 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.10 3.90 8.14 -2.40 -0.02 3.88 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.07 2.49 4.04 -2.39 -0.01 2.48 16 46 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -76.08 367.05 -1.82 -77.90 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.37 Total: 29.85 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.09 Total: -10.76 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -5.44 Total: -93.75 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.97 Total: -40.82 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -76.08 -1.82 -77.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754852329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.753 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds