Wall clock time and date at job start Tue Mar 31 2020 11:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46503 * 2 1 4 4 H 1.08996 * 109.47330 * 303.17043 * 3 2 1 5 5 S 1.81406 * 109.46702 * 183.17392 * 3 2 1 6 6 C 1.81397 * 102.99921 * 67.92374 * 5 3 2 7 7 C 1.50705 * 109.47386 * 63.17858 * 3 2 1 8 8 O 1.21282 * 119.99626 * 34.99337 * 7 3 2 9 9 N 1.34778 * 120.00014 * 214.99915 * 7 3 2 10 10 C 1.46493 * 119.99769 * 185.08265 * 9 7 3 11 11 C 1.53002 * 109.54360 * 299.42292 * 10 9 7 12 12 N 1.46496 * 109.47380 * 304.33655 * 11 10 9 13 13 C 1.36936 * 120.00358 * 185.07569 * 12 11 10 14 14 H 1.08007 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00488 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99430 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47413 * 0.02562 * 17 15 13 19 19 H 1.48511 * 109.46761 * 120.00180 * 17 15 13 20 20 H 1.48498 * 109.47230 * 239.99627 * 17 15 13 21 21 C 1.53176 * 109.54326 * 179.25005 * 10 9 7 22 22 C 1.53284 * 109.06329 * 297.02719 * 21 10 9 23 23 O 1.42905 * 109.46176 * 302.44691 * 22 21 10 24 24 C 1.42906 * 114.09554 * 61.15478 * 23 22 21 25 25 C 1.53093 * 109.41611 * 298.84063 * 24 23 22 26 26 H 1.08999 * 109.46852 * 54.86602 * 1 2 3 27 27 H 1.09003 * 109.46468 * 174.86352 * 1 2 3 28 28 H 1.09001 * 109.47085 * 294.86301 * 1 2 3 29 29 H 1.08994 * 109.47086 * 119.99897 * 2 1 3 30 30 H 1.08995 * 109.46956 * 240.00472 * 2 1 3 31 31 H 1.09002 * 109.46868 * 174.89477 * 6 5 3 32 32 H 1.09006 * 109.46561 * 294.88625 * 6 5 3 33 33 H 1.08989 * 109.47595 * 54.88878 * 6 5 3 34 34 H 0.96997 * 119.99767 * 5.08003 * 9 7 3 35 35 H 1.08998 * 109.47013 * 64.33888 * 11 10 9 36 36 H 1.09002 * 109.46900 * 184.33640 * 11 10 9 37 37 H 0.97001 * 119.99692 * 5.06852 * 12 11 10 38 38 H 0.97001 * 119.99383 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.52794 * 57.01507 * 21 10 9 40 40 H 1.09000 * 109.52590 * 177.20555 * 21 10 9 41 41 H 1.09001 * 109.45952 * 182.44319 * 22 21 10 42 42 H 1.09001 * 109.46391 * 62.44839 * 22 21 10 43 43 H 1.08998 * 109.47662 * 178.86213 * 24 23 22 44 44 H 1.08999 * 109.48871 * 58.83523 * 24 23 22 45 45 H 1.08996 * 109.52478 * 297.71070 * 25 24 23 46 46 H 1.08993 * 109.57196 * 177.54767 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6309 1.9725 -0.8602 5 16 3.8515 1.4435 -0.0947 6 6 4.1732 0.8098 -1.7636 7 6 1.6029 2.1299 1.2680 8 8 1.5415 1.5056 2.3059 9 7 1.2802 3.4383 1.2484 10 6 0.9632 4.1333 2.4985 11 6 -0.2515 3.4752 3.1561 12 7 -1.3708 3.4613 2.2111 13 6 -2.6008 3.0134 2.6131 14 1 -2.7456 2.6700 3.6269 15 6 -3.6613 2.9998 1.7176 16 7 -3.4846 3.4178 0.4821 17 14 -5.3390 2.3881 2.2659 18 1 -5.2747 1.9778 3.6916 19 1 -6.3379 3.4758 2.1088 20 1 -5.7383 1.2253 1.4331 21 6 0.6517 5.6036 2.2026 22 6 1.9008 6.2719 1.6170 23 8 2.9876 6.1370 2.5350 24 6 3.3523 4.7834 2.8125 25 6 2.1638 4.0559 3.4465 26 1 -0.3633 0.5914 -0.8404 27 1 -0.3632 -1.0236 -0.0920 28 1 -0.3633 0.4321 0.9324 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 5.2430 0.8513 -1.9681 32 1 3.8299 -0.2225 -1.8326 33 1 3.6400 1.4195 -2.4929 34 1 1.2578 3.9198 0.4067 35 1 -0.0019 2.4525 3.4389 36 1 -0.5335 4.0394 4.0451 37 1 -1.2406 3.7695 1.3007 38 1 -4.2258 3.4086 -0.1436 39 1 -0.1671 5.6655 1.4858 40 1 0.3677 6.1087 3.1258 41 1 1.6997 7.3292 1.4444 42 1 2.1605 5.7924 0.6732 43 1 4.1970 4.7685 3.5013 44 1 3.6312 4.2843 1.8845 45 1 1.9103 4.5298 4.3948 46 1 2.4248 3.0119 3.6194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755095025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:31 Heat of formation + Delta-G solvation = -76.756791 kcal Electronic energy + Delta-G solvation = -26699.239441 eV Core-core repulsion = 23136.320816 eV Total energy + Delta-G solvation = -3562.918625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54062 -38.49676 -35.87737 -34.21906 -33.66790 -31.67929 -31.00030 -30.37191 -29.10256 -27.69110 -26.40651 -23.71901 -23.46785 -22.51709 -21.42611 -20.28404 -19.06411 -17.58268 -17.23863 -16.36719 -16.04877 -15.85166 -15.42589 -15.03229 -14.63477 -14.41202 -14.33200 -13.94596 -13.83352 -13.56206 -13.21651 -13.14924 -12.86850 -12.66166 -12.55131 -12.35437 -12.24969 -11.82191 -11.64141 -11.55856 -11.20542 -11.10978 -10.91100 -10.83855 -10.70055 -10.48280 -10.27276 -10.03329 -10.00184 -9.70956 -9.51525 -9.29373 -8.79221 -8.57281 -7.83233 -6.85433 -5.76139 -3.01760 1.26212 2.32237 3.17591 3.41678 3.43701 3.50024 3.51625 4.01210 4.59466 4.60854 4.71172 4.90100 4.92791 4.95617 5.04617 5.13331 5.16943 5.19715 5.35001 5.41645 5.52534 5.55686 5.59956 5.62687 5.80246 5.81143 5.89026 5.97770 6.09893 6.13310 6.16716 6.26401 6.33389 6.39002 6.48249 6.52638 6.72369 6.88936 7.08230 7.31589 7.73342 7.80244 8.43528 8.52958 9.55441 10.12964 10.49131 11.47124 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.005669 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.901229 B = 4937.972927 C = 6697.195346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 C -0.081 4.081 4 H 0.102 0.898 5 S -0.226 6.226 6 C -0.126 4.126 7 C 0.549 3.451 8 O -0.513 6.513 9 N -0.706 5.706 10 C 0.176 3.824 11 C 0.142 3.858 12 N -0.724 5.724 13 C -0.227 4.227 14 H 0.068 0.932 15 C -0.015 4.015 16 N -0.936 5.936 17 Si 0.903 3.097 18 H -0.281 1.281 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.153 4.153 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.065 3.935 25 C -0.163 4.163 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.396 0.604 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.381 0.619 38 H 0.252 0.748 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.100 -0.252 -4.271 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.212 4.212 4 H 0.120 0.880 5 S 0.001 5.999 6 C -0.295 4.295 7 C 0.333 3.667 8 O -0.389 6.389 9 N -0.358 5.358 10 C 0.090 3.910 11 C 0.013 3.987 12 N -0.368 5.368 13 C -0.359 4.359 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.586 5.586 17 Si 0.735 3.265 18 H -0.206 1.206 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.191 4.191 22 C -0.016 4.016 23 O -0.304 6.304 24 C -0.012 4.012 25 C -0.202 4.202 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.230 0.770 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.215 0.785 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.799 -0.285 -2.547 16.993 hybrid contribution -2.156 -0.612 -1.710 2.819 sum 14.643 -0.896 -4.257 15.276 Atomic orbital electron populations 1.21817 0.93618 1.01880 1.03880 1.21654 0.97463 0.91991 1.02955 1.23475 0.95001 1.01738 1.01034 0.88008 1.86944 1.05451 1.86601 1.20940 1.23465 1.05894 1.04114 0.95993 1.19241 0.76960 0.81756 0.88783 1.90655 1.51990 1.64200 1.32019 1.45904 1.70141 1.09748 1.10020 1.20610 0.95082 0.91436 0.83880 1.21115 0.86144 0.98770 0.92621 1.42185 1.05813 1.77896 1.10928 1.19269 0.86755 1.33807 0.96056 0.91359 1.24643 0.97937 1.02544 0.95881 1.69653 1.30977 1.53978 1.03989 0.86163 0.84739 0.77985 0.77647 1.20639 1.22020 1.22031 1.22460 0.98659 0.94044 1.03985 1.22633 0.86337 1.01098 0.91528 1.87890 1.51469 1.26196 1.64875 1.22522 0.96524 0.82419 0.99701 1.22523 0.95430 1.03074 0.99165 0.92670 0.92581 0.90674 0.89727 0.91912 0.87977 0.90228 0.90326 0.77001 0.93617 0.95751 0.78538 0.93818 0.89087 0.89537 0.88903 0.93527 0.89364 0.93010 0.90341 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.61 37.16 0.36 -2.10 16 2 C -0.10 -1.38 5.11 -26.73 -0.14 -1.52 16 3 C -0.08 -1.09 2.66 -27.88 -0.07 -1.16 16 4 H 0.10 1.25 8.09 -51.93 -0.42 0.83 16 5 S -0.23 -2.70 21.75 -107.50 -2.34 -5.03 16 6 C -0.13 -1.02 10.45 101.05 1.06 0.03 16 7 C 0.55 8.96 5.33 -10.98 -0.06 8.90 16 8 O -0.51 -10.00 12.16 5.56 0.07 -9.93 16 9 N -0.71 -10.76 3.62 -47.44 -0.17 -10.93 16 10 C 0.18 2.84 0.32 -131.64 -0.04 2.80 16 11 C 0.14 2.94 4.89 -4.04 -0.02 2.92 16 12 N -0.72 -17.68 5.16 -59.91 -0.31 -17.99 16 13 C -0.23 -6.32 9.99 -15.06 -0.15 -6.47 16 14 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 16 N -0.94 -27.39 13.06 55.49 0.72 -26.66 16 17 Si 0.90 22.51 29.55 -169.99 -5.02 17.48 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 C -0.15 -2.27 4.81 -26.49 -0.13 -2.40 16 22 C 0.06 0.76 6.67 37.30 0.25 1.01 16 23 O -0.39 -5.39 10.77 -35.23 -0.38 -5.77 16 24 C 0.07 0.86 6.68 37.21 0.25 1.11 16 25 C -0.16 -2.43 4.76 -26.59 -0.13 -2.55 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.51 7.23 -51.93 -0.38 1.14 16 29 H 0.08 1.27 7.74 -51.93 -0.40 0.86 16 30 H 0.06 0.70 7.11 -51.93 -0.37 0.33 16 31 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 0.60 7.39 -51.92 -0.38 0.22 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.40 5.34 7.51 -40.82 -0.31 5.04 16 35 H 0.05 1.06 6.19 -51.93 -0.32 0.74 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.38 9.51 6.62 -40.82 -0.27 9.24 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 39 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.54 7.11 -51.93 -0.37 0.17 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.70 7.75 -51.93 -0.40 0.29 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 1.51 6.26 -51.93 -0.32 1.19 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -31.42 369.94 -8.45 -39.87 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -7.68 Total: 13.33 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 1.08 Total: 0.07 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.24 Total: -55.59 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.31 Total: -15.71 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.34 Total: -5.03 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.42 -8.45 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755095025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.884 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds