Wall clock time and date at job start Tue Mar 31 2020 11:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46503 * 2 1 4 4 H 1.08996 * 109.47330 * 303.17043 * 3 2 1 5 5 S 1.81406 * 109.46702 * 183.17392 * 3 2 1 6 6 C 1.81397 * 102.99921 * 67.92374 * 5 3 2 7 7 C 1.50705 * 109.47386 * 63.17858 * 3 2 1 8 8 O 1.21282 * 119.99626 * 34.99337 * 7 3 2 9 9 N 1.34778 * 120.00014 * 214.99915 * 7 3 2 10 10 C 1.46493 * 119.99769 * 185.08265 * 9 7 3 11 11 C 1.53002 * 109.54360 * 299.42292 * 10 9 7 12 12 N 1.46496 * 109.47380 * 304.33655 * 11 10 9 13 13 C 1.36936 * 120.00358 * 185.07569 * 12 11 10 14 14 H 1.08007 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00488 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99430 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00095 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47413 * 0.02562 * 17 15 13 19 19 H 1.48511 * 109.46761 * 120.00180 * 17 15 13 20 20 H 1.48498 * 109.47230 * 239.99627 * 17 15 13 21 21 C 1.53176 * 109.54326 * 179.25005 * 10 9 7 22 22 C 1.53284 * 109.06329 * 297.02719 * 21 10 9 23 23 O 1.42905 * 109.46176 * 302.44691 * 22 21 10 24 24 C 1.42906 * 114.09554 * 61.15478 * 23 22 21 25 25 C 1.53093 * 109.41611 * 298.84063 * 24 23 22 26 26 H 1.08999 * 109.46852 * 54.86602 * 1 2 3 27 27 H 1.09003 * 109.46468 * 174.86352 * 1 2 3 28 28 H 1.09001 * 109.47085 * 294.86301 * 1 2 3 29 29 H 1.08994 * 109.47086 * 119.99897 * 2 1 3 30 30 H 1.08995 * 109.46956 * 240.00472 * 2 1 3 31 31 H 1.09002 * 109.46868 * 174.89477 * 6 5 3 32 32 H 1.09006 * 109.46561 * 294.88625 * 6 5 3 33 33 H 1.08989 * 109.47595 * 54.88878 * 6 5 3 34 34 H 0.96997 * 119.99767 * 5.08003 * 9 7 3 35 35 H 1.08998 * 109.47013 * 64.33888 * 11 10 9 36 36 H 1.09002 * 109.46900 * 184.33640 * 11 10 9 37 37 H 0.97001 * 119.99692 * 5.06852 * 12 11 10 38 38 H 0.97001 * 119.99383 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.52794 * 57.01507 * 21 10 9 40 40 H 1.09000 * 109.52590 * 177.20555 * 21 10 9 41 41 H 1.09001 * 109.45952 * 182.44319 * 22 21 10 42 42 H 1.09001 * 109.46391 * 62.44839 * 22 21 10 43 43 H 1.08998 * 109.47662 * 178.86213 * 24 23 22 44 44 H 1.08999 * 109.48871 * 58.83523 * 24 23 22 45 45 H 1.08996 * 109.52478 * 297.71070 * 25 24 23 46 46 H 1.08993 * 109.57196 * 177.54767 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6309 1.9725 -0.8602 5 16 3.8515 1.4435 -0.0947 6 6 4.1732 0.8098 -1.7636 7 6 1.6029 2.1299 1.2680 8 8 1.5415 1.5056 2.3059 9 7 1.2802 3.4383 1.2484 10 6 0.9632 4.1333 2.4985 11 6 -0.2515 3.4752 3.1561 12 7 -1.3708 3.4613 2.2111 13 6 -2.6008 3.0134 2.6131 14 1 -2.7456 2.6700 3.6269 15 6 -3.6613 2.9998 1.7176 16 7 -3.4846 3.4178 0.4821 17 14 -5.3390 2.3881 2.2659 18 1 -5.2747 1.9778 3.6916 19 1 -6.3379 3.4758 2.1088 20 1 -5.7383 1.2253 1.4331 21 6 0.6517 5.6036 2.2026 22 6 1.9008 6.2719 1.6170 23 8 2.9876 6.1370 2.5350 24 6 3.3523 4.7834 2.8125 25 6 2.1638 4.0559 3.4465 26 1 -0.3633 0.5914 -0.8404 27 1 -0.3632 -1.0236 -0.0920 28 1 -0.3633 0.4321 0.9324 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 5.2430 0.8513 -1.9681 32 1 3.8299 -0.2225 -1.8326 33 1 3.6400 1.4195 -2.4929 34 1 1.2578 3.9198 0.4067 35 1 -0.0019 2.4525 3.4389 36 1 -0.5335 4.0394 4.0451 37 1 -1.2406 3.7695 1.3007 38 1 -4.2258 3.4086 -0.1436 39 1 -0.1671 5.6655 1.4858 40 1 0.3677 6.1087 3.1258 41 1 1.6997 7.3292 1.4444 42 1 2.1605 5.7924 0.6732 43 1 4.1970 4.7685 3.5013 44 1 3.6312 4.2843 1.8845 45 1 1.9103 4.5298 4.3948 46 1 2.4248 3.0119 3.6194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755095025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:30 Heat of formation + Delta-G solvation = -97.687788 kcal Electronic energy + Delta-G solvation = -26700.147077 eV Core-core repulsion = 23136.320816 eV Total energy + Delta-G solvation = -3563.826262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82845 -39.70433 -37.32232 -35.57499 -35.36232 -33.22712 -32.26355 -32.01673 -29.76475 -28.90471 -28.06097 -25.43546 -24.71294 -23.82168 -22.94917 -21.48406 -20.40346 -19.26370 -18.76234 -17.46634 -17.27976 -16.98124 -16.84210 -16.35089 -16.16439 -15.79139 -15.56617 -15.31627 -15.02194 -14.77713 -14.65829 -14.39143 -14.20324 -13.81099 -13.75303 -13.70113 -13.40904 -13.21015 -13.08566 -12.84666 -12.82499 -12.71045 -12.43245 -12.29606 -12.08993 -11.96159 -11.94307 -11.64901 -11.36499 -11.03772 -10.93727 -10.67904 -10.47083 -9.92634 -8.93038 -8.73911 -7.95201 -5.20297 0.29349 1.43527 1.44687 1.51754 1.53891 1.91932 2.19858 2.54456 2.96282 3.36393 3.46042 3.56875 3.68389 3.78617 3.87942 4.00033 4.06285 4.25751 4.26781 4.30720 4.36761 4.39652 4.44470 4.46780 4.64769 4.67329 4.75460 4.79402 4.84629 4.85851 4.89115 4.98673 5.06279 5.10835 5.15463 5.17198 5.20075 5.34976 5.47768 5.63088 6.24755 6.27472 6.55528 7.27378 7.35787 8.08659 8.38494 9.27721 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.005669 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.901229 B = 4937.972927 C = 6697.195346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.078 4.078 4 H 0.116 0.884 5 S -0.249 6.249 6 C -0.117 4.117 7 C 0.544 3.456 8 O -0.552 6.552 9 N -0.701 5.701 10 C 0.182 3.818 11 C 0.145 3.855 12 N -0.724 5.724 13 C -0.240 4.240 14 H 0.061 0.939 15 C -0.063 4.063 16 N -0.960 5.960 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.293 1.293 21 C -0.146 4.146 22 C 0.065 3.935 23 O -0.391 6.391 24 C 0.073 3.927 25 C -0.156 4.156 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.405 0.595 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.378 0.622 38 H 0.250 0.750 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 0.062 -5.767 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.209 4.209 4 H 0.134 0.866 5 S -0.023 6.023 6 C -0.285 4.285 7 C 0.329 3.671 8 O -0.430 6.430 9 N -0.353 5.353 10 C 0.096 3.904 11 C 0.017 3.983 12 N -0.367 5.367 13 C -0.372 4.372 14 H 0.079 0.921 15 C -0.256 4.256 16 N -0.610 5.610 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.217 1.217 20 H -0.221 1.221 21 C -0.184 4.184 22 C -0.011 4.011 23 O -0.310 6.310 24 C -0.004 4.004 25 C -0.195 4.195 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.242 0.758 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.211 0.789 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.226 0.045 -4.045 18.670 hybrid contribution -2.563 -0.758 -1.231 2.943 sum 15.663 -0.713 -5.276 16.543 Atomic orbital electron populations 1.21715 0.95667 1.02079 1.00999 1.21598 0.95400 0.92483 1.03742 1.23360 0.96735 1.01175 0.99665 0.86589 1.87064 1.03375 1.87206 1.24631 1.23596 1.07272 1.04584 0.93021 1.19799 0.76122 0.81773 0.89431 1.90638 1.53562 1.65015 1.33758 1.45853 1.69549 1.09759 1.10096 1.20433 0.93587 0.91947 0.84446 1.21112 0.87138 0.97724 0.92329 1.42190 1.05835 1.77436 1.11272 1.19513 0.88243 1.33572 0.95837 0.92139 1.25302 1.00958 1.03238 0.96077 1.69768 1.31664 1.54945 1.04672 0.85241 0.80862 0.77279 0.77407 1.20048 1.21708 1.22073 1.22379 0.99596 0.92974 1.03498 1.22707 0.84622 1.02263 0.91515 1.87895 1.51594 1.26263 1.65224 1.22504 0.95923 0.81969 1.00004 1.22441 0.95594 1.02388 0.99072 0.92786 0.91392 0.95578 0.91367 0.88497 0.86136 0.89255 0.89012 0.75848 0.96203 0.96339 0.78917 0.94060 0.90625 0.90070 0.86761 0.92053 0.87571 0.92857 0.90210 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.61 71.98 0.69 -4.04 16 2 C -0.09 -2.46 5.11 30.60 0.16 -2.30 16 3 C -0.08 -2.03 2.66 29.85 0.08 -1.95 16 4 H 0.12 2.65 8.09 -2.39 -0.02 2.63 16 5 S -0.25 -5.46 21.75 -56.49 -1.23 -6.69 16 6 C -0.12 -1.48 10.45 113.37 1.18 -0.30 16 7 C 0.54 18.01 5.33 87.66 0.47 18.48 16 8 O -0.55 -22.46 12.16 -3.04 -0.04 -22.50 16 9 N -0.70 -21.43 3.62 -422.39 -1.53 -22.96 16 10 C 0.18 5.98 0.32 3.72 0.00 5.98 16 11 C 0.14 6.27 4.89 86.38 0.42 6.70 16 12 N -0.72 -36.54 5.16 -343.45 -1.77 -38.31 16 13 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 14 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 15 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 16 N -0.96 -56.70 13.06 21.65 0.28 -56.42 16 17 Si 0.96 46.72 29.55 68.60 2.03 48.75 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 21 C -0.15 -4.27 4.81 30.75 0.15 -4.12 16 22 C 0.07 1.51 6.67 72.08 0.48 1.99 16 23 O -0.39 -10.05 10.77 -148.98 -1.60 -11.66 16 24 C 0.07 1.81 6.68 72.01 0.48 2.29 16 25 C -0.16 -4.65 4.76 30.69 0.15 -4.50 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.02 1.08 7.23 -2.39 -0.02 1.06 16 29 H 0.07 2.05 7.74 -2.39 -0.02 2.03 16 30 H 0.10 1.91 7.11 -2.39 -0.02 1.89 16 31 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.01 7.39 -2.39 -0.02 0.99 16 33 H 0.09 0.98 8.14 -2.40 -0.02 0.96 16 34 H 0.41 10.67 7.51 -92.71 -0.70 9.98 16 35 H 0.02 0.98 6.19 -2.39 -0.01 0.97 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.38 19.36 6.62 -92.71 -0.61 18.75 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.08 2.46 7.36 -2.39 -0.02 2.44 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 1.25 7.11 -2.39 -0.02 1.24 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.05 1.33 7.75 -2.39 -0.02 1.32 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.07 2.52 6.26 -2.39 -0.01 2.51 16 Total: -1.00 -69.27 369.94 1.37 -67.90 By element: Atomic # 1 Polarization: 39.93 SS G_CDS: -0.33 Total: 39.60 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.56 Total: 2.29 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -3.02 Total: -117.69 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.64 Total: -34.16 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -1.23 Total: -6.69 kcal Total: -69.27 1.37 -67.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755095025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.790 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds