Wall clock time and date at job start Tue Mar 31 2020 12:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.64423 * 2 1 4 4 C 1.55156 * 110.71635 * 236.66107 * 2 1 3 5 5 C 1.54916 * 101.58229 * 206.13525 * 4 2 1 6 6 N 1.47741 * 104.89522 * 36.96035 * 5 4 2 7 7 C 1.34778 * 125.81680 * 155.99684 * 6 5 4 8 8 O 1.21360 * 120.00112 * 180.02562 * 7 6 5 9 9 C 1.49357 * 120.00120 * 359.97438 * 7 6 5 10 10 O 1.21377 * 120.00055 * 0.02562 * 9 7 6 11 11 N 1.34779 * 119.99962 * 180.02562 * 9 7 6 12 12 C 1.39739 * 119.99715 * 174.89069 * 11 9 7 13 13 C 1.39347 * 119.95127 * 145.76141 * 12 11 9 14 14 C 1.38467 * 120.42219 * 180.02562 * 13 12 11 15 15 C 1.37691 * 120.33065 * 359.96014 * 14 13 12 16 16 C 1.40747 * 119.89836 * 0.02562 * 15 14 13 17 17 C 1.41410 * 120.21112 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99911 * 205.18662 * 17 16 15 19 19 C 1.39932 * 119.99744 * 25.18325 * 17 16 15 20 20 N 1.30829 * 120.00303 * 16.80334 * 19 17 16 21 21 Si 1.86804 * 119.99945 * 196.80186 * 19 17 16 22 22 H 1.48503 * 109.46745 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47062 * 119.99759 * 21 19 17 24 24 H 1.48495 * 109.47397 * 240.00321 * 21 19 17 25 25 C 1.38306 * 119.95661 * 325.48849 * 12 11 9 26 26 C 1.47018 * 108.53570 * 335.98880 * 6 5 4 27 27 H 1.09009 * 109.88259 * 241.44180 * 26 6 5 28 28 C 1.52995 * 109.88559 * 120.42903 * 26 6 5 29 29 H 1.09000 * 109.46847 * 296.86010 * 1 2 3 30 30 H 1.08998 * 109.47005 * 56.85640 * 1 2 3 31 31 H 1.08999 * 109.47510 * 176.86059 * 1 2 3 32 32 H 1.08993 * 111.00965 * 324.21118 * 4 2 1 33 33 H 1.09001 * 111.00379 * 88.02904 * 4 2 1 34 34 H 1.08998 * 110.36602 * 155.84915 * 5 4 2 35 35 H 1.08998 * 110.36982 * 278.06764 * 5 4 2 36 36 H 0.96992 * 120.00196 * 354.89136 * 11 9 7 37 37 H 1.08000 * 119.78622 * 0.02562 * 13 12 11 38 38 H 1.08007 * 119.83672 * 179.97438 * 14 13 12 39 39 H 1.08003 * 120.05565 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00361 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.16112 * 359.97438 * 25 12 11 42 42 H 1.09001 * 109.47042 * 301.71926 * 28 26 6 43 43 H 1.09004 * 109.46845 * 61.71444 * 28 26 6 44 44 H 1.08995 * 109.47826 * 181.71980 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7976 -1.2124 5 6 3.4633 -1.2511 -0.6854 6 7 3.2459 -1.5494 0.7451 7 6 3.9934 -2.3786 1.5003 8 8 3.7184 -2.5474 2.6702 9 6 5.1595 -3.0906 0.8971 10 8 5.4344 -2.9222 -0.2731 11 7 5.9067 -3.9202 1.6522 12 6 6.9308 -4.6677 1.0647 13 6 8.0953 -4.9361 1.7813 14 6 9.1164 -5.6754 1.2085 15 6 8.9917 -6.1544 -0.0764 16 6 7.8213 -5.8917 -0.8126 17 6 7.6864 -6.3799 -2.1328 18 1 7.0309 -5.8788 -2.8296 19 6 8.4024 -7.5125 -2.5364 20 7 8.9288 -8.3073 -1.6405 21 14 8.6065 -7.8895 -4.3546 22 1 7.9223 -6.8437 -5.1568 23 1 10.0514 -7.9089 -4.6969 24 1 8.0086 -9.2150 -4.6555 25 6 6.7848 -5.1449 -0.2252 26 6 2.0760 -0.7893 1.2086 27 1 2.3716 -0.0992 1.9990 28 6 1.0048 -1.7492 1.7300 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8605 31 1 -0.3634 -1.0261 -0.0563 32 1 1.4451 -1.6560 -1.4347 33 1 2.1843 -0.1556 -2.0870 34 1 3.7959 -2.1448 -1.2133 35 1 4.1936 -0.4501 -0.7994 36 1 5.7336 -3.9983 2.6033 37 1 8.2021 -4.5652 2.7900 38 1 10.0151 -5.8775 1.7724 39 1 9.7908 -6.7309 -0.5187 40 1 9.4247 -9.0926 -1.9202 41 1 5.8807 -4.9416 -0.7799 42 1 0.7232 -2.4439 0.9386 43 1 1.3993 -2.3069 2.5795 44 1 0.1291 -1.1811 2.0433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334522708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:56 Heat of formation + Delta-G solvation = -44.167220 kcal Electronic energy + Delta-G solvation = -26208.574878 eV Core-core repulsion = 22511.625491 eV Total energy + Delta-G solvation = -3696.949387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87176 -39.36572 -37.83418 -37.12643 -34.68869 -33.37234 -32.92510 -31.36174 -29.87445 -28.66954 -27.96332 -25.51924 -25.34343 -24.35474 -22.64492 -21.22295 -20.73429 -19.67028 -19.11444 -18.04691 -17.36818 -16.67876 -16.24268 -15.58372 -15.51842 -15.19314 -14.70865 -14.46087 -14.29519 -14.03831 -13.67694 -13.39474 -13.06876 -13.01212 -12.93945 -12.66130 -12.38492 -12.18950 -12.07580 -11.73163 -11.66897 -11.49832 -11.26751 -11.14347 -10.99649 -10.92845 -10.75596 -10.67254 -10.48073 -10.07703 -9.69936 -9.38940 -9.11429 -8.96501 -8.81459 -7.49878 -6.99778 -6.75004 -4.37283 1.57081 2.40351 2.74604 2.92657 3.08383 3.14411 3.18206 3.57405 3.69711 3.94318 4.20939 4.36469 4.52672 4.61519 4.70323 4.93786 5.09301 5.11521 5.15319 5.36306 5.42038 5.46508 5.59044 5.66607 5.71867 5.79728 5.81063 5.92189 6.01124 6.07818 6.20986 6.25449 6.35803 6.63032 6.87733 6.97567 7.01268 7.17582 7.22988 7.40337 7.64408 7.78142 7.90459 8.04320 8.09628 8.17722 8.46229 8.63894 8.89418 8.93596 10.18742 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.003203 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.140195 B = 8738.889176 C = 9963.131598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.085 0.915 4 C -0.131 4.131 5 C 0.095 3.905 6 N -0.589 5.589 7 C 0.526 3.474 8 O -0.525 6.525 9 C 0.499 3.501 10 O -0.495 6.495 11 N -0.634 5.634 12 C 0.145 3.855 13 C -0.255 4.255 14 C -0.091 4.091 15 C -0.168 4.168 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.208 4.208 26 C 0.136 3.864 27 H 0.077 0.923 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.410 0.590 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.280 0.720 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.816 12.854 2.249 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.104 0.896 4 C -0.169 4.169 5 C -0.027 4.027 6 N -0.324 5.324 7 C 0.309 3.691 8 O -0.402 6.402 9 C 0.280 3.720 10 O -0.370 6.370 11 N -0.279 5.279 12 C 0.054 3.946 13 C -0.276 4.276 14 C -0.110 4.110 15 C -0.188 4.188 16 C 0.117 3.883 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.229 4.229 26 C 0.033 3.967 27 H 0.095 0.905 28 C -0.223 4.223 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.622 12.609 2.106 17.965 hybrid contribution 0.095 -0.294 -0.212 0.375 sum -12.526 12.315 1.894 17.668 Atomic orbital electron populations 1.21857 0.93734 1.02516 1.01866 1.22272 0.96509 0.99132 0.94136 0.89632 1.22947 0.96106 1.00327 0.97544 1.22746 0.96889 1.03150 0.79917 1.48402 1.28704 1.43085 1.12192 1.19976 0.83582 0.79732 0.85815 1.90718 1.70589 1.63018 1.15866 1.19890 0.84006 0.81063 0.87053 1.90760 1.68533 1.62053 1.15643 1.43132 1.32043 1.40318 1.12384 1.17446 0.87351 0.95264 0.94523 1.20074 0.95194 1.12237 1.00120 1.20475 0.96717 0.98050 0.95806 1.21388 0.98875 1.04178 0.94369 1.17476 0.89528 0.88611 0.92726 1.19604 1.22956 1.09456 0.96697 0.90265 1.25910 0.93333 0.95160 0.99806 1.69826 1.26272 1.10437 1.35411 0.86260 0.78945 0.78956 0.82572 1.18341 1.19699 1.20013 1.20956 1.00128 1.07552 0.94289 1.21674 0.85387 0.92955 0.96667 0.90488 1.22233 0.98173 0.99760 1.02150 0.92259 0.92289 0.91808 0.90388 0.89593 0.87659 0.90811 0.75413 0.89002 0.88817 0.86183 0.90923 0.87634 0.92250 0.91146 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 7.98 37.16 0.30 -0.58 16 2 C -0.10 -0.79 3.48 -88.78 -0.31 -1.10 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.12 6.53 -24.58 -0.16 -1.28 16 5 C 0.09 1.14 6.08 -2.35 -0.01 1.12 16 6 N -0.59 -7.92 3.09 -163.30 -0.50 -8.43 16 7 C 0.53 8.60 7.70 -11.63 -0.09 8.51 16 8 O -0.53 -9.13 15.38 5.49 0.08 -9.04 16 9 C 0.50 9.39 7.58 -11.63 -0.09 9.30 16 10 O -0.50 -10.28 11.55 5.47 0.06 -10.22 16 11 N -0.63 -12.25 5.32 -10.34 -0.05 -12.30 16 12 C 0.15 3.33 6.25 -83.82 -0.52 2.81 16 13 C -0.25 -5.67 9.97 -39.08 -0.39 -6.06 16 14 C -0.09 -2.13 10.01 -39.70 -0.40 -2.52 16 15 C -0.17 -4.37 8.69 -38.83 -0.34 -4.71 16 16 C 0.12 3.24 5.57 -106.85 -0.59 2.64 16 17 C -0.46 -12.32 9.05 -37.74 -0.34 -12.66 16 18 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 19 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 20 N -0.79 -20.44 10.94 55.55 0.61 -19.83 16 21 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.21 -5.30 8.39 -38.67 -0.32 -5.63 16 26 C 0.14 1.43 3.42 -66.95 -0.23 1.20 16 27 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 28 C -0.17 -1.68 7.93 37.16 0.29 -1.39 16 29 H 0.06 0.33 7.59 -51.93 -0.39 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 6.62 -51.93 -0.34 0.07 16 32 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 1.50 6.18 -51.93 -0.32 1.18 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.41 6.93 8.30 -40.82 -0.34 6.59 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 39 H 0.12 3.19 6.16 -52.48 -0.32 2.87 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 41 H 0.11 2.72 6.48 -52.49 -0.34 2.38 16 42 H 0.06 0.61 7.56 -51.93 -0.39 0.22 16 43 H 0.07 0.88 6.75 -51.93 -0.35 0.53 16 44 H 0.07 0.54 6.67 -51.93 -0.35 0.20 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -29.62 354.33 -8.87 -38.49 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.08 Total: 10.82 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -3.30 Total: -8.54 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.05 Total: -40.56 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.15 Total: -19.27 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.62 -8.87 -38.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334522708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.680 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds