Wall clock time and date at job start Tue Mar 31 2020 12:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46467 * 2 1 4 4 C 1.52724 * 109.32865 * 240.26961 * 2 1 3 5 5 H 1.08995 * 109.46799 * 302.17934 * 4 2 1 6 6 C 1.53007 * 109.77106 * 62.49677 * 4 2 1 7 7 S 1.81741 * 108.84295 * 182.42739 * 4 2 1 8 8 O 1.42101 * 109.47191 * 170.46009 * 7 4 2 9 9 C 1.81738 * 102.30497 * 54.42334 * 7 4 2 10 10 C 1.53239 * 108.80169 * 305.46123 * 9 7 4 11 11 N 1.46374 * 109.46796 * 119.99291 * 2 1 3 12 12 C 1.34775 * 119.64489 * 5.08939 * 11 2 1 13 13 O 1.21578 * 120.00152 * 5.41157 * 12 11 2 14 14 N 1.34775 * 119.99617 * 185.40957 * 12 11 2 15 15 C 1.46507 * 119.99827 * 185.66102 * 14 12 11 16 16 C 1.53007 * 109.46938 * 180.02562 * 15 14 12 17 17 C 1.52991 * 109.47305 * 59.99459 * 16 15 14 18 18 C 1.52998 * 109.46685 * 299.99604 * 16 15 14 19 19 C 1.50701 * 109.46768 * 180.02562 * 16 15 14 20 20 H 1.08002 * 120.00350 * 28.67580 * 19 16 15 21 21 C 1.37873 * 119.99525 * 208.40929 * 19 16 15 22 22 N 1.31518 * 119.99953 * 165.54418 * 21 19 16 23 23 Si 1.86797 * 120.00266 * 345.54553 * 21 19 16 24 24 H 1.48492 * 109.47607 * 92.17890 * 23 21 19 25 25 H 1.48504 * 109.47385 * 212.18407 * 23 21 19 26 26 H 1.48501 * 109.46890 * 332.17654 * 23 21 19 27 27 H 1.08995 * 109.47011 * 293.59783 * 1 2 3 28 28 H 1.09003 * 109.46690 * 53.59383 * 1 2 3 29 29 H 1.08998 * 109.47315 * 173.59512 * 1 2 3 30 30 H 1.09000 * 109.47199 * 179.47859 * 6 4 2 31 31 H 1.09005 * 109.46883 * 299.47962 * 6 4 2 32 32 H 1.09006 * 109.47052 * 59.47641 * 6 4 2 33 33 H 1.08996 * 109.58357 * 185.66348 * 9 7 4 34 34 H 1.09002 * 109.58371 * 65.25798 * 9 7 4 35 35 H 1.08997 * 109.46905 * 297.64987 * 10 9 7 36 36 H 1.08996 * 109.47316 * 177.65970 * 10 9 7 37 37 H 0.97004 * 120.00338 * 5.65126 * 14 12 11 38 38 H 1.08995 * 109.47518 * 59.99508 * 15 14 12 39 39 H 1.09003 * 109.46422 * 299.99383 * 15 14 12 40 40 H 1.09002 * 109.47149 * 196.83279 * 17 16 15 41 41 H 1.09003 * 109.47539 * 316.83641 * 17 16 15 42 42 H 1.09002 * 109.47312 * 76.83467 * 17 16 15 43 43 H 1.09000 * 109.47316 * 296.99574 * 18 16 15 44 44 H 1.08991 * 109.47697 * 57.00048 * 18 16 15 45 45 H 1.09003 * 109.46807 * 177.00228 * 18 16 15 46 46 H 0.96994 * 120.00119 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0355 -0.7147 -1.2515 5 1 1.6393 -1.7298 -1.2751 6 6 1.5794 0.0430 -2.5000 7 16 3.8514 -0.7706 -1.2024 8 8 4.3274 -1.6187 -2.2384 9 6 4.1716 -1.5455 0.4100 10 6 3.4494 -0.7416 1.4965 11 7 2.0179 -0.6899 1.1952 12 6 1.1400 -1.2884 2.0244 13 8 -0.0381 -1.3391 1.7286 14 7 1.5683 -1.8308 3.1815 15 6 0.6392 -2.5889 4.0233 16 6 1.3731 -3.0916 5.2681 17 6 1.9177 -1.8985 6.0559 18 6 2.5326 -3.9961 4.8459 19 6 0.4175 -3.8719 6.1337 20 1 -0.4157 -4.3924 5.6850 21 6 0.6101 -3.9257 7.4978 22 7 -0.3553 -4.3536 8.2818 23 14 2.2421 -3.3910 8.2326 24 1 2.1741 -1.9528 8.5958 25 1 2.5251 -4.1957 9.4482 26 1 3.3248 -3.5997 7.2379 27 1 -0.3633 0.4114 0.9417 28 1 -0.3633 0.6100 -0.8271 29 1 -0.3634 -1.0212 -0.1146 30 1 1.9504 -0.4659 -3.3897 31 1 0.4902 0.0754 -2.5277 32 1 1.9725 1.0593 -2.4722 33 1 5.2434 -1.5469 0.6082 34 1 3.7979 -2.5694 0.4039 35 1 3.8512 0.2712 1.5266 36 1 3.6000 -1.2210 2.4637 37 1 2.4917 -1.7195 3.4569 38 1 0.2509 -3.4386 3.4619 39 1 -0.1866 -1.9443 4.3244 40 1 2.6773 -2.2427 6.7577 41 1 2.3593 -1.1789 5.3664 42 1 1.1044 -1.4237 6.6047 43 1 2.1405 -4.8732 4.3311 44 1 3.1958 -3.4482 4.1766 45 1 3.0877 -4.3114 5.7295 46 1 -0.2197 -4.3918 9.2415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459226708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:17 Heat of formation + Delta-G solvation = -22.057819 kcal Electronic energy + Delta-G solvation = -26167.285455 eV Core-core repulsion = 22606.738755 eV Total energy + Delta-G solvation = -3560.546700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62047 -37.57183 -36.35785 -35.89065 -34.89086 -33.06100 -31.49860 -30.81444 -28.78901 -26.60351 -26.03639 -25.16147 -24.67881 -23.58591 -21.56281 -19.89451 -19.22176 -18.11498 -17.50564 -16.44455 -16.09350 -16.02404 -15.63526 -15.45307 -15.08461 -14.82489 -14.47811 -14.10519 -13.79336 -13.32928 -13.31854 -13.11942 -12.95707 -12.66280 -12.42512 -12.40396 -12.24863 -12.22192 -12.02872 -11.94545 -11.87544 -11.61325 -11.27469 -11.16585 -10.51257 -10.37450 -10.20886 -10.01804 -9.99721 -9.22341 -8.99647 -8.85351 -8.76761 -8.54146 -8.51324 -8.37260 -6.18660 -4.15016 1.23092 2.21192 2.65357 3.21485 3.24994 3.33226 3.36751 3.50952 4.01798 4.31181 4.32349 4.61694 4.65034 4.71927 4.85259 4.93907 5.10873 5.15402 5.27259 5.34230 5.42777 5.56290 5.70089 5.71668 5.74081 5.83918 5.95433 6.04267 6.19292 6.23379 6.29711 6.41186 6.48959 6.53820 6.66154 6.69928 6.81319 6.96247 6.99655 7.18466 7.40276 7.68687 8.16130 8.42522 8.82964 8.88134 9.45710 10.94615 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025040 B = 0.003509 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.960496 B = 7977.801658 C = 8620.369258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.189 3.811 3 H 0.087 0.913 4 C -0.420 4.420 5 H 0.096 0.904 6 C -0.125 4.125 7 S 1.238 4.762 8 O -0.852 6.852 9 C -0.461 4.461 10 C 0.134 3.866 11 N -0.642 5.642 12 C 0.699 3.301 13 O -0.578 6.578 14 N -0.739 5.739 15 C 0.157 3.843 16 C 0.031 3.969 17 C -0.162 4.162 18 C -0.144 4.144 19 C -0.514 4.514 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.308 1.308 26 H -0.258 1.258 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.390 0.610 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.055 0.945 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.576 14.358 -16.346 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.084 3.916 3 H 0.105 0.895 4 C -0.539 4.539 5 H 0.114 0.886 6 C -0.184 4.184 7 S 1.437 4.563 8 O -0.847 6.847 9 C -0.600 4.600 10 C 0.009 3.991 11 N -0.380 5.380 12 C 0.401 3.599 13 O -0.456 6.456 14 N -0.397 5.397 15 C 0.034 3.966 16 C 0.029 3.971 17 C -0.219 4.219 18 C -0.201 4.201 19 C -0.551 4.551 20 H 0.094 0.906 21 C -0.128 4.128 22 N -0.526 5.526 23 Si 0.733 3.267 24 H -0.216 1.216 25 H -0.237 1.237 26 H -0.186 1.186 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.228 0.772 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.286 14.524 -17.042 24.641 hybrid contribution 0.535 -2.064 0.881 2.307 sum 10.821 12.460 -16.160 23.098 Atomic orbital electron populations 1.22255 0.91532 1.03786 1.01246 1.20506 0.97157 0.93841 0.80055 0.89516 1.27800 1.19200 1.05798 1.01112 0.88588 1.21440 1.03023 0.99633 0.94255 1.70325 0.87489 1.14900 0.83595 1.93115 1.72795 1.70880 1.47947 1.28022 1.07089 1.09113 1.15764 1.21101 0.80015 1.00530 0.97438 1.47363 1.05723 1.59280 1.25675 1.16076 0.84889 0.78356 0.80573 1.90976 1.15615 1.63619 1.75362 1.45938 1.14957 1.57375 1.21421 1.21455 0.91222 0.93864 0.90047 1.18710 0.93817 0.92446 0.92110 1.22445 1.00648 0.98788 0.99990 1.22238 0.98256 0.99814 0.99806 1.20714 1.11447 1.32009 0.90977 0.90588 1.25023 0.96181 0.94646 0.96916 1.69957 1.31312 1.46944 1.04397 0.87016 0.85365 0.77228 0.77043 1.21582 1.23690 1.18564 0.90769 0.94152 0.90323 0.92159 0.90755 0.91221 0.85748 0.88901 0.89227 0.89227 0.77239 0.92547 0.91745 0.93493 0.94451 0.91834 0.93395 0.96319 0.92660 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 7.09 37.16 0.26 -1.28 16 2 C 0.19 1.76 2.81 -68.14 -0.19 1.57 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.42 -3.83 2.77 -26.87 -0.07 -3.90 16 5 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 6 C -0.12 -0.90 8.92 37.16 0.33 -0.57 16 7 S 1.24 9.92 13.08 -107.50 -1.41 8.52 16 8 O -0.85 -12.50 18.14 -35.23 -0.64 -13.14 16 9 C -0.46 -3.73 6.65 37.28 0.25 -3.48 16 10 C 0.13 1.03 6.22 -3.98 -0.02 1.01 16 11 N -0.64 -7.09 2.80 -172.01 -0.48 -7.57 16 12 C 0.70 10.92 8.07 -86.92 -0.70 10.22 16 13 O -0.58 -10.88 11.63 5.30 0.06 -10.82 16 14 N -0.74 -11.75 4.63 -65.22 -0.30 -12.05 16 15 C 0.16 3.11 4.55 -4.03 -0.02 3.09 16 16 C 0.03 0.65 0.50 -155.66 -0.08 0.57 16 17 C -0.16 -3.24 6.68 37.15 0.25 -2.99 16 18 C -0.14 -2.80 8.15 37.16 0.30 -2.50 16 19 C -0.51 -13.62 8.56 -34.44 -0.29 -13.92 16 20 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 21 C 0.08 2.06 5.25 -17.82 -0.09 1.97 16 22 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 23 Si 0.90 21.01 22.88 -169.99 -3.89 17.12 16 24 H -0.29 -6.59 6.97 56.52 0.39 -6.20 16 25 H -0.31 -7.42 7.11 56.52 0.40 -7.01 16 26 H -0.26 -5.53 4.46 56.52 0.25 -5.28 16 27 H 0.07 1.04 6.72 -51.93 -0.35 0.69 16 28 H 0.04 0.38 6.83 -51.93 -0.35 0.02 16 29 H 0.08 1.18 6.60 -51.93 -0.34 0.83 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 6.67 -51.93 -0.35 0.20 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.73 5.44 -51.93 -0.28 0.45 16 37 H 0.39 5.31 3.64 -40.82 -0.15 5.16 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.05 0.96 2.71 -51.93 -0.14 0.82 16 41 H 0.04 0.61 6.56 -51.93 -0.34 0.27 16 42 H 0.06 1.37 7.47 -51.93 -0.39 0.98 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.29 6.78 -51.93 -0.35 -0.06 16 45 H 0.05 1.13 5.18 -51.93 -0.27 0.86 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -36.05 344.28 -8.04 -44.08 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.26 Total: 4.44 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.08 Total: -10.20 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.01 Total: -45.19 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.58 Total: -23.96 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -3.89 Total: 17.12 kcal Atomic # 16 Polarization: 9.92 SS G_CDS: -1.41 Total: 8.52 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.05 -8.04 -44.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459226708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.024 kcal (2) G-P(sol) polarization free energy of solvation -36.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds