Wall clock time and date at job start Tue Mar 31 2020 11:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46277 * 2 1 4 4 C 1.52996 * 109.47228 * 240.00250 * 2 1 3 5 5 N 1.46499 * 109.47074 * 184.99637 * 4 2 1 6 6 C 1.46496 * 120.00275 * 269.99918 * 5 4 2 7 7 C 1.36937 * 119.99492 * 90.00174 * 5 4 2 8 8 H 1.07990 * 120.00423 * 22.33886 * 7 5 4 9 9 C 1.38813 * 119.99396 * 202.33576 * 7 5 4 10 10 N 1.31619 * 120.00312 * 11.36031 * 9 7 5 11 11 Si 1.86801 * 119.99823 * 191.36134 * 9 7 5 12 12 H 1.48493 * 109.47394 * 89.99874 * 11 9 7 13 13 H 1.48497 * 109.47300 * 210.00158 * 11 9 7 14 14 H 1.48500 * 109.47091 * 329.99869 * 11 9 7 15 15 N 1.46494 * 109.46937 * 120.00040 * 2 1 3 16 16 C 1.34780 * 120.00161 * 274.72158 * 15 2 1 17 17 O 1.21278 * 119.99926 * 0.28335 * 16 15 2 18 18 C 1.50695 * 120.00169 * 180.27751 * 16 15 2 19 19 C 1.50693 * 109.47429 * 180.02562 * 18 16 15 20 20 C 1.34001 * 126.90875 * 265.03138 * 19 18 16 21 21 O 1.34445 * 110.15448 * 179.97438 * 20 19 18 22 22 C 1.34810 * 110.89369 * 359.97438 * 21 20 19 23 23 C 1.38944 * 133.49648 * 180.02562 * 22 21 20 24 24 C 1.37845 * 119.81596 * 179.97438 * 23 22 21 25 25 C 1.38744 * 120.68560 * 359.97438 * 24 23 22 26 26 C 1.36736 * 120.42167 * 359.97438 * 25 24 23 27 27 C 1.39416 * 119.71491 * 359.75595 * 26 25 24 28 28 H 1.09004 * 109.47155 * 60.00104 * 1 2 3 29 29 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47160 * 299.99704 * 1 2 3 31 31 H 1.09005 * 109.47026 * 305.00094 * 4 2 1 32 32 H 1.09004 * 109.47231 * 64.99314 * 4 2 1 33 33 H 1.09003 * 109.47069 * 94.22481 * 6 5 4 34 34 H 1.08997 * 109.47167 * 214.22941 * 6 5 4 35 35 H 1.09005 * 109.47021 * 334.23195 * 6 5 4 36 36 H 0.96997 * 119.99717 * 179.97438 * 10 9 7 37 37 H 0.96997 * 119.99891 * 95.00852 * 15 2 1 38 38 H 1.09006 * 109.47217 * 300.00671 * 18 16 15 39 39 H 1.08998 * 109.47144 * 60.00306 * 18 16 15 40 40 H 1.07995 * 124.91804 * 359.94802 * 20 19 18 41 41 H 1.07995 * 120.09016 * 359.97438 * 23 22 21 42 42 H 1.08001 * 119.65704 * 179.97438 * 24 23 22 43 43 H 1.08003 * 119.79079 * 179.97438 * 25 24 23 44 44 H 1.07997 * 120.14566 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7612 7 6 4.0850 -1.9157 -0.6023 8 1 3.5339 -2.8397 -0.5087 9 6 5.3863 -1.8324 -0.1264 10 7 5.9795 -0.6611 -0.0339 11 14 6.2957 -3.3826 0.3827 12 1 7.0231 -3.9367 -0.7873 13 1 7.2651 -3.0569 1.4594 14 1 5.3217 -4.3868 0.8809 15 7 2.0183 -0.6906 1.1961 16 6 2.1523 -0.0169 2.3558 17 8 1.8638 1.1598 2.4103 18 6 2.6605 -0.7258 3.5846 19 6 2.7159 0.2436 4.7370 20 6 3.7787 0.9520 5.1424 21 8 3.4521 1.7116 6.2025 22 6 2.1588 1.5356 6.5399 23 6 1.3482 2.0709 7.5334 24 6 0.0286 1.6830 7.6243 25 6 -0.5017 0.7619 6.7325 26 6 0.2787 0.2239 5.7469 27 6 1.6142 0.6084 5.6357 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 4.6022 0.9458 -0.9801 34 1 5.2403 -0.2026 -2.1812 35 1 3.7810 0.7486 -2.5470 36 1 6.8887 -0.6029 0.2991 37 1 2.2491 -1.6317 1.1525 38 1 1.9893 -1.5478 3.8336 39 1 3.6589 -1.1179 3.3911 40 1 4.7560 0.9173 4.6842 41 1 1.7510 2.7889 8.2324 42 1 -0.5990 2.1004 8.3978 43 1 -1.5374 0.4678 6.8173 44 1 -0.1388 -0.4924 5.0549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:37 Heat of formation + Delta-G solvation = 12.410826 kcal Electronic energy + Delta-G solvation = -26661.478972 eV Core-core repulsion = 22966.982993 eV Total energy + Delta-G solvation = -3694.495979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31278 -39.04079 -37.78845 -36.34028 -34.04135 -33.56230 -31.43192 -30.59314 -30.19669 -29.53556 -27.40184 -26.17471 -25.62757 -23.24582 -22.23045 -22.05976 -20.91846 -19.78528 -19.41961 -17.23535 -16.99190 -16.84213 -16.37966 -15.73873 -15.70926 -15.36363 -14.90086 -14.53251 -14.09906 -13.78895 -13.72293 -13.28583 -13.26049 -12.89653 -12.76833 -12.51066 -12.23368 -12.15677 -11.99505 -11.83095 -11.46102 -11.36597 -11.24105 -10.90673 -10.79300 -10.72581 -10.40676 -10.25109 -10.08034 -9.92542 -9.86517 -9.11966 -8.61771 -8.56319 -8.20921 -8.01251 -6.81705 -5.78014 -3.24665 1.00179 1.42019 2.47059 2.93945 3.29334 3.36427 3.37676 3.39076 3.74888 4.07390 4.41467 4.58165 4.67859 4.93422 5.03770 5.19211 5.31521 5.38072 5.43870 5.46002 5.56305 5.57572 5.69111 5.71320 5.85588 5.92409 5.98932 6.04721 6.17123 6.26425 6.29983 6.33394 6.45079 6.47638 6.51557 6.57524 6.70304 6.74061 6.90202 7.28570 7.34252 7.36745 7.66803 7.76769 8.31894 8.36868 9.02661 9.16350 9.80418 10.30891 11.25791 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.004024 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.136752 B = 6957.350146 C = 7994.727357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.689 5.689 16 C 0.518 3.482 17 O -0.554 6.554 18 C -0.072 4.072 19 C -0.149 4.149 20 C 0.019 3.981 21 O -0.194 6.194 22 C 0.048 3.952 23 C -0.109 4.109 24 C -0.102 4.102 25 C -0.140 4.140 26 C -0.066 4.066 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.044 0.956 35 H -0.005 1.005 36 H 0.252 0.748 37 H 0.403 0.597 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.209 0.791 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 0.592 10.650 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.544 5.544 11 Si 0.727 3.273 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.339 5.339 16 C 0.304 3.696 17 O -0.433 6.433 18 C -0.112 4.112 19 C -0.151 4.151 20 C -0.046 4.046 21 O -0.096 6.096 22 C 0.001 3.999 23 C -0.127 4.127 24 C -0.120 4.120 25 C -0.158 4.158 26 C -0.084 4.084 27 C -0.109 4.109 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.014 0.986 36 H 0.062 0.938 37 H 0.239 0.761 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.226 0.774 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.238 1.645 10.840 15.001 hybrid contribution 0.842 -1.282 0.098 1.537 sum -9.396 0.362 10.938 14.424 Atomic orbital electron populations 1.22153 0.97068 1.01125 1.01446 1.21768 0.91656 0.98338 0.87085 0.90715 1.21182 0.85928 0.97849 0.93655 1.43883 0.98917 1.22615 1.66641 1.20794 0.92952 0.90468 0.93844 1.19102 0.97207 0.89444 1.32806 0.91553 1.24993 0.98612 0.96105 0.99510 1.70083 1.13313 1.21521 1.49503 0.86395 0.79977 0.82924 0.78051 1.21547 1.21771 1.20457 1.45694 1.65360 1.14228 1.08591 1.20215 0.77696 0.87218 0.84487 1.90643 1.51221 1.16053 1.85341 1.19986 1.04398 0.96670 0.90145 1.20485 0.92264 1.03270 0.99042 1.23806 1.00540 0.92162 0.88069 1.83995 1.25412 1.57222 1.42927 1.19627 0.83094 0.99053 0.98171 1.19881 0.92676 1.02313 0.97832 1.20843 0.93806 0.97852 0.99457 1.20711 0.99979 0.98888 0.96266 1.20264 0.91442 0.99144 0.97593 1.19771 0.94946 0.99480 0.96687 0.92408 0.93083 0.93037 0.93391 0.93102 0.95403 0.93718 0.98616 0.93770 0.76146 0.88592 0.87381 0.77438 0.85349 0.85136 0.85654 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.49 37.16 0.35 -2.07 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 3 H 0.07 1.63 7.57 -51.93 -0.39 1.24 16 4 C 0.14 2.69 5.36 -4.04 -0.02 2.67 16 5 N -0.60 -13.94 2.82 -181.12 -0.51 -14.45 16 6 C 0.16 3.96 9.01 59.84 0.54 4.50 16 7 C -0.26 -6.30 8.02 -15.06 -0.12 -6.42 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.16 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -24.67 10.59 55.49 0.59 -24.08 16 11 Si 0.90 20.23 29.57 -169.99 -5.03 15.21 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 N -0.69 -12.87 4.49 -53.81 -0.24 -13.11 16 16 C 0.52 10.05 7.79 -10.99 -0.09 9.96 16 17 O -0.55 -12.67 15.69 5.56 0.09 -12.58 16 18 C -0.07 -1.15 6.25 -29.04 -0.18 -1.33 16 19 C -0.15 -2.46 4.85 -102.66 -0.50 -2.95 16 20 C 0.02 0.30 11.89 29.24 0.35 0.65 16 21 O -0.19 -3.13 10.58 3.92 0.04 -3.09 16 22 C 0.05 0.74 7.42 -38.47 -0.29 0.46 16 23 C -0.11 -1.36 10.07 -39.46 -0.40 -1.75 16 24 C -0.10 -1.09 10.01 -39.54 -0.40 -1.49 16 25 C -0.14 -1.60 9.98 -39.94 -0.40 -2.00 16 26 C -0.07 -0.91 10.05 -39.69 -0.40 -1.31 16 27 C -0.11 -1.73 6.38 -105.15 -0.67 -2.40 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 33 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 34 H 0.04 1.15 7.19 -51.93 -0.37 0.78 16 35 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 36 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 37 H 0.40 7.30 7.40 -40.82 -0.30 6.99 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.21 2.79 8.06 -52.49 -0.42 2.36 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 44 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -31.58 370.10 -8.45 -40.03 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.46 Total: 7.88 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.16 Total: -51.65 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.13 Total: -15.67 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.58 -8.45 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.440 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds