Wall clock time and date at job start Tue Mar 31 2020 11:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46897 * 2 1 4 4 C 1.53001 * 109.47559 * 120.00113 * 2 1 3 5 5 N 1.46497 * 109.47283 * 174.99598 * 4 2 1 6 6 C 1.46499 * 120.00214 * 269.72814 * 5 4 2 7 7 C 1.36943 * 119.99461 * 90.00135 * 5 4 2 8 8 H 1.07994 * 120.00300 * 339.59708 * 7 5 4 9 9 C 1.38814 * 119.99754 * 159.60060 * 7 5 4 10 10 N 1.31629 * 119.99901 * 344.34470 * 9 7 5 11 11 Si 1.86795 * 120.00020 * 164.34946 * 9 7 5 12 12 H 1.48496 * 109.47352 * 90.00051 * 11 9 7 13 13 H 1.48505 * 109.46834 * 209.99663 * 11 9 7 14 14 H 1.48500 * 109.47124 * 329.99584 * 11 9 7 15 15 N 1.46500 * 109.46858 * 240.00631 * 2 1 3 16 16 C 1.34776 * 120.00440 * 84.99862 * 15 2 1 17 17 O 1.21280 * 119.99563 * 359.97438 * 16 15 2 18 18 C 1.50705 * 120.00091 * 179.97438 * 16 15 2 19 19 C 1.50697 * 109.47010 * 179.97438 * 18 16 15 20 20 C 1.33988 * 126.90875 * 265.02297 * 19 18 16 21 21 O 1.34449 * 110.15915 * 179.97438 * 20 19 18 22 22 C 1.34813 * 110.88560 * 0.02562 * 21 20 19 23 23 C 1.38937 * 133.49335 * 179.97438 * 22 21 20 24 24 C 1.37840 * 119.82026 * 179.97438 * 23 22 21 25 25 C 1.38746 * 120.68249 * 0.02562 * 24 23 22 26 26 C 1.36737 * 120.41820 * 359.97438 * 25 24 23 27 27 C 1.39407 * 119.71701 * 359.76467 * 26 25 24 28 28 H 1.09006 * 109.47141 * 299.99928 * 1 2 3 29 29 H 1.09001 * 109.47599 * 59.99543 * 1 2 3 30 30 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46579 * 54.99892 * 4 2 1 32 32 H 1.08994 * 109.46932 * 295.00354 * 4 2 1 33 33 H 1.09004 * 109.46956 * 265.08588 * 6 5 4 34 34 H 1.08994 * 109.47069 * 25.08616 * 6 5 4 35 35 H 1.09001 * 109.46893 * 145.08989 * 6 5 4 36 36 H 0.96990 * 119.99765 * 180.02562 * 10 9 7 37 37 H 0.97008 * 119.99608 * 264.99704 * 15 2 1 38 38 H 1.08999 * 109.46719 * 300.00138 * 18 16 15 39 39 H 1.08998 * 109.46708 * 59.99940 * 18 16 15 40 40 H 1.08004 * 124.92647 * 359.95938 * 20 19 18 41 41 H 1.08007 * 120.08803 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.66228 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.78847 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.14300 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1258 -1.9948 0.5663 7 6 4.2799 0.1649 1.7239 8 1 3.8664 1.1494 1.8850 9 6 5.6019 -0.0959 2.0575 10 7 6.0226 -1.3391 2.1571 11 14 6.7837 1.3175 2.3652 12 1 6.7529 1.6843 3.8038 13 1 8.1594 0.9032 1.9894 14 1 6.3785 2.4887 1.5470 15 7 2.0182 -0.6905 -1.1963 16 6 2.1469 -0.0181 -2.3572 17 8 1.8580 1.1585 -2.4116 18 6 2.6498 -0.7283 -3.5876 19 6 2.6997 0.2399 -4.7413 20 6 1.7559 0.4307 -5.6730 21 8 2.1493 1.3762 -6.5442 22 6 3.3706 1.8479 -6.2225 23 6 4.2043 2.8062 -6.7854 24 6 5.4279 3.0735 -6.2098 25 6 5.8385 2.3944 -5.0717 26 6 5.0330 1.4476 -4.5021 27 6 3.7896 1.1675 -5.0670 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -1.7198 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 4.3623 -2.7331 1.3327 34 1 3.4388 -2.4310 -0.1587 35 1 5.0420 -1.6897 0.0608 36 1 6.9462 -1.5213 2.3905 37 1 2.2489 -1.6317 -1.1527 38 1 3.6491 -1.1201 -3.3980 39 1 1.9775 -1.5506 -3.8326 40 1 0.8154 -0.0984 -5.7180 41 1 3.8945 3.3403 -7.6715 42 1 6.0742 3.8187 -6.6497 43 1 6.8004 2.6150 -4.6328 44 1 5.3568 0.9219 -3.6159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:41 Heat of formation + Delta-G solvation = 16.236570 kcal Electronic energy + Delta-G solvation = -26481.958726 eV Core-core repulsion = 22787.628644 eV Total energy + Delta-G solvation = -3694.330082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.42243 -39.32653 -37.81244 -36.47305 -34.14856 -33.75603 -31.44989 -30.62786 -30.31494 -29.66956 -27.61182 -26.22475 -25.62305 -23.30420 -22.29343 -22.18554 -20.89769 -20.09033 -19.57889 -17.34668 -17.05922 -16.79508 -16.74892 -15.90042 -15.78057 -15.31905 -15.07356 -14.71490 -14.08481 -13.80025 -13.74743 -13.54485 -13.34534 -13.04461 -12.91197 -12.52709 -12.30715 -12.24242 -12.06883 -11.90250 -11.54951 -11.43050 -11.32221 -10.85105 -10.83854 -10.65987 -10.63323 -10.20412 -10.06497 -10.00212 -9.86869 -9.35307 -8.64982 -8.59559 -8.43505 -8.11512 -6.78954 -5.75157 -3.18179 0.95217 1.40355 2.31717 2.81158 3.08418 3.37482 3.44573 3.48820 3.66864 3.84934 4.46452 4.49773 4.57156 4.86596 4.97593 5.05710 5.21159 5.31336 5.35800 5.42265 5.44416 5.48383 5.52983 5.61642 5.64433 5.79698 5.93639 5.95777 6.07644 6.17615 6.24101 6.29000 6.42790 6.45307 6.51148 6.52875 6.58008 6.66018 6.79648 7.09754 7.18275 7.28449 7.63801 7.79610 8.02078 8.35246 8.72213 9.20836 9.84117 10.30855 11.29949 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011877 B = 0.004272 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.841878 B = 6553.127367 C = 8190.269638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.168 3.832 7 C -0.251 4.251 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.908 5.908 11 Si 0.900 3.100 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.705 5.705 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.073 4.073 19 C -0.147 4.147 20 C 0.010 3.990 21 O -0.195 6.195 22 C 0.049 3.951 23 C -0.112 4.112 24 C -0.096 4.096 25 C -0.137 4.137 26 C -0.062 4.062 27 C -0.111 4.111 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.030 0.970 34 H -0.007 1.007 35 H 0.042 0.958 36 H 0.252 0.748 37 H 0.396 0.604 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.205 0.795 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 0.198 -15.947 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.101 0.899 4 C 0.015 3.985 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.381 4.381 8 H 0.085 0.915 9 C -0.195 4.195 10 N -0.554 5.554 11 Si 0.729 3.271 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.205 1.205 15 N -0.356 5.356 16 C 0.297 3.703 17 O -0.419 6.419 18 C -0.113 4.113 19 C -0.149 4.149 20 C -0.055 4.055 21 O -0.096 6.096 22 C 0.002 3.998 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.155 4.155 26 C -0.080 4.080 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.011 0.989 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.232 0.768 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.221 0.779 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.921 1.061 -16.143 17.596 hybrid contribution 0.876 0.177 0.466 1.008 sum -6.044 1.238 -15.677 16.848 Atomic orbital electron populations 1.22118 0.96644 1.01182 1.01713 1.21881 0.92020 0.98911 0.86205 0.89924 1.21044 0.85843 0.97495 0.94145 1.43839 0.99092 1.22581 1.66541 1.20807 0.94113 0.88925 0.93824 1.19162 0.92977 0.90276 1.35684 0.91456 1.24901 0.98500 0.96038 1.00110 1.70077 1.16017 1.16952 1.52348 0.86331 0.80653 0.82053 0.78019 1.21433 1.21587 1.20548 1.46024 1.66433 1.13874 1.09313 1.20357 0.78015 0.87438 0.84459 1.90684 1.50190 1.15855 1.85134 1.20015 1.04164 0.96659 0.90456 1.20444 0.94729 1.01149 0.98561 1.23599 0.99380 0.92169 0.90352 1.83972 1.30193 1.46970 1.48496 1.19591 0.85286 0.98615 0.96322 1.19864 0.93486 0.97916 1.01779 1.20894 0.95024 0.99548 0.95967 1.20792 1.00551 0.97388 0.96818 1.20394 0.91747 0.97000 0.98869 1.19728 0.96051 0.98744 0.96673 0.92040 0.92985 0.93086 0.94155 0.92019 0.95213 0.98919 0.93938 0.93818 0.76831 0.87778 0.88137 0.77858 0.85342 0.85004 0.85368 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.12 2.06 2.88 -67.93 -0.20 1.86 16 3 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 4 C 0.14 2.74 5.29 -4.04 -0.02 2.72 16 5 N -0.60 -14.21 2.78 -181.12 -0.50 -14.71 16 6 C 0.17 3.81 8.52 59.85 0.51 4.32 16 7 C -0.25 -6.81 9.67 -15.06 -0.15 -6.95 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 9 C 0.00 0.07 5.05 -17.43 -0.09 -0.02 16 10 N -0.91 -25.94 10.69 55.49 0.59 -25.35 16 11 Si 0.90 21.98 29.58 -169.99 -5.03 16.96 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 N -0.70 -11.37 4.53 -53.81 -0.24 -11.62 16 16 C 0.51 8.57 7.79 -10.98 -0.09 8.49 16 17 O -0.54 -11.29 15.70 5.56 0.09 -11.20 16 18 C -0.07 -0.93 6.25 -29.03 -0.18 -1.11 16 19 C -0.15 -2.08 4.85 -102.67 -0.50 -2.58 16 20 C 0.01 0.12 11.89 29.24 0.35 0.47 16 21 O -0.19 -2.73 10.58 3.90 0.04 -2.69 16 22 C 0.05 0.72 7.42 -38.47 -0.29 0.43 16 23 C -0.11 -1.37 10.07 -39.47 -0.40 -1.77 16 24 C -0.10 -1.09 10.01 -39.54 -0.40 -1.48 16 25 C -0.14 -1.76 9.98 -39.94 -0.40 -2.15 16 26 C -0.06 -0.93 10.05 -39.69 -0.40 -1.33 16 27 C -0.11 -1.73 6.38 -105.16 -0.67 -2.40 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 33 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 34 H -0.01 -0.14 5.78 -51.93 -0.30 -0.44 16 35 H 0.04 1.06 7.22 -51.93 -0.37 0.69 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.40 5.72 6.22 -40.82 -0.25 5.47 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 42 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 44 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -33.80 368.25 -8.38 -42.18 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.32 Total: 4.31 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.55 Total: -3.42 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.15 Total: -51.68 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.13 Total: -13.89 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.80 -8.38 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.414 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds