Wall clock time and date at job start Tue Mar 31 2020 11:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.50696 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00042 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99865 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99741 * 179.97438 * 11 9 8 13 13 C 1.50709 * 109.47001 * 90.00387 * 12 11 9 14 14 H 1.08001 * 119.99331 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00246 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00393 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46949 * 59.99466 * 17 15 13 19 19 H 1.48496 * 109.47644 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47133 * 299.99954 * 17 15 13 21 21 C 1.46493 * 119.99962 * 0.02562 * 11 9 8 22 22 C 1.53009 * 109.47290 * 90.00051 * 21 11 9 23 23 C 1.47196 * 109.47329 * 180.02562 * 22 21 11 24 24 N 9.04224 * 99.24408 * 312.54641 * 2 1 3 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 28 28 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 29 29 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 1.09000 * 109.47287 * 209.99941 * 12 11 9 37 37 H 1.09002 * 109.47320 * 330.00543 * 12 11 9 38 38 H 0.96994 * 120.00434 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47085 * 209.99906 * 21 11 9 40 40 H 1.08999 * 109.47554 * 329.99880 * 21 11 9 41 41 H 1.09000 * 109.46938 * 299.99945 * 22 21 11 42 42 H 1.08999 * 109.46962 * 59.99467 * 22 21 11 43 43 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 44 44 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9003 6.8177 -1.4382 10 8 5.1762 7.3568 -0.3874 11 7 5.2061 7.4193 -2.6049 12 6 5.8701 8.7251 -2.6038 13 6 7.3643 8.5288 -2.6036 14 1 7.7778 7.5311 -2.6039 15 6 8.2034 9.6228 -2.6021 16 7 7.6998 10.8378 -2.6012 17 14 10.0554 9.3796 -2.6012 18 1 10.4557 8.6221 -3.8141 19 1 10.7286 10.7031 -2.6001 20 1 10.4543 8.6199 -1.3892 21 6 4.8733 6.7678 -3.8741 22 6 3.4721 7.1958 -4.3152 23 6 3.1375 6.5408 -5.5902 24 7 2.8816 6.0348 -6.5752 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.8445 4.7475 -1.9543 35 1 3.2585 5.5555 -1.9527 36 1 5.5770 9.2826 -3.4934 37 1 5.5766 9.2812 -1.7134 38 1 8.2900 11.6074 -2.6005 39 1 5.5984 7.0601 -4.6336 40 1 4.8988 5.6858 -3.7449 41 1 2.7470 6.9035 -3.5557 42 1 3.4466 8.2778 -4.4445 43 1 1.3340 4.5114 0.0143 44 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057027421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:06 Heat of formation + Delta-G solvation = -32.600520 kcal Electronic energy + Delta-G solvation = -25234.155859 eV Core-core repulsion = 21537.708041 eV Total energy + Delta-G solvation = -3696.447817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.34385 -39.33152 -37.85825 -36.83867 -35.25352 -33.53699 -32.77373 -31.23871 -30.82455 -29.54574 -27.81037 -26.98933 -24.49477 -23.95067 -22.81362 -22.35987 -20.84972 -18.44203 -18.35703 -17.59787 -16.65391 -16.49680 -16.40793 -15.98909 -15.56677 -15.20287 -15.00703 -14.68461 -14.34243 -14.24083 -14.03196 -13.74640 -13.50430 -13.24806 -12.97071 -12.69182 -12.41204 -12.39190 -12.26372 -12.05041 -12.01566 -11.68788 -11.39416 -11.25140 -11.15862 -11.03716 -10.97715 -10.89426 -10.66188 -10.58082 -10.19045 -9.72145 -9.14875 -9.01228 -8.46779 -8.20404 -7.83419 -6.08509 -4.13137 1.19616 1.27043 2.73685 2.81981 3.03558 3.30130 3.32026 3.35171 3.39708 3.55972 3.71980 4.21852 4.41929 4.58255 4.69647 4.79738 4.81805 4.82838 5.01973 5.10478 5.13310 5.18298 5.21272 5.23529 5.26785 5.33061 5.40520 5.49429 5.53804 5.71431 5.82404 5.86951 6.02754 6.10978 6.12744 6.22119 6.29209 6.60358 6.63125 6.95015 7.18179 7.36816 7.44005 7.58493 7.87514 8.17934 8.28199 8.84567 9.00243 9.52395 10.99590 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002900 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.762593 B = 9653.452737 C =10855.595416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.150 4.150 5 C -0.076 4.076 6 C -0.111 4.111 7 C -0.062 4.062 8 C -0.137 4.137 9 C 0.506 3.494 10 O -0.534 6.534 11 N -0.598 5.598 12 C 0.244 3.756 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.118 3.882 22 C -0.050 4.050 23 C 0.217 3.783 24 N -0.446 5.446 25 C -0.077 4.077 26 C -0.206 4.206 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 -16.676 3.610 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.168 4.168 5 C -0.095 4.095 6 C -0.111 4.111 7 C -0.100 4.100 8 C -0.178 4.178 9 C 0.293 3.707 10 O -0.411 6.411 11 N -0.330 5.330 12 C 0.125 3.875 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.008 4.008 22 C -0.092 4.092 23 C -0.101 4.101 24 N -0.124 5.124 25 C -0.095 4.095 26 C -0.225 4.225 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.397 -17.104 2.705 22.519 hybrid contribution 0.840 0.265 0.211 0.906 sum -13.557 -16.839 2.916 21.814 Atomic orbital electron populations 1.23028 0.78557 1.03776 1.01349 1.86058 1.21262 1.27179 1.88955 1.19040 0.92418 0.84053 0.97385 1.20427 0.91305 0.98692 1.06398 1.20953 1.00121 0.90918 0.97459 1.19937 0.93494 0.95516 1.02170 1.20294 1.01466 0.92267 0.95956 1.21760 1.01589 0.95957 0.98457 1.20412 0.79472 0.86745 0.84078 1.90690 1.53720 1.65901 1.30761 1.48227 1.58305 1.22856 1.03609 1.19335 0.91795 0.77735 0.98598 1.21380 0.91110 0.92885 1.51328 0.92453 1.24915 0.99033 0.95033 0.95016 1.69907 1.35434 0.97728 1.50237 0.86581 0.85054 0.77286 0.78644 1.20265 1.21218 1.20165 1.21292 0.93321 0.97695 0.88539 1.19907 1.00195 1.01736 0.87355 1.29141 0.93064 0.93281 0.94598 1.81226 1.09161 1.10062 1.11922 1.20887 0.94092 0.96999 0.97548 1.21206 0.99854 0.92405 1.09045 0.92706 0.92681 0.88398 0.85364 0.85113 0.90242 0.90085 0.89272 0.89578 0.94824 0.93592 0.92627 0.88884 0.90549 0.87581 0.86541 0.85638 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.23 10.50 -19.44 -0.20 -3.44 16 3 C 0.12 1.24 6.69 -39.21 -0.26 0.97 16 4 C -0.15 -1.58 9.99 -39.43 -0.39 -1.97 16 5 C -0.08 -0.81 9.69 -39.61 -0.38 -1.19 16 6 C -0.11 -1.21 5.14 -104.60 -0.54 -1.74 16 7 C -0.06 -0.76 4.63 -27.88 -0.13 -0.89 16 8 C -0.14 -1.70 4.23 -27.89 -0.12 -1.82 16 9 C 0.51 8.99 7.67 -10.98 -0.08 8.91 16 10 O -0.53 -12.02 15.56 5.56 0.09 -11.93 16 11 N -0.60 -10.74 2.46 -175.06 -0.43 -11.17 16 12 C 0.24 5.74 5.16 -5.19 -0.03 5.71 16 13 C -0.53 -14.03 9.39 -34.44 -0.32 -14.36 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 22 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 23 C 0.22 2.63 15.43 -20.75 -0.32 2.31 16 24 N -0.45 -6.60 18.54 42.17 0.78 -5.82 16 25 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 26 C -0.21 -1.99 9.04 -39.43 -0.36 -2.35 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 34 H 0.09 1.01 7.40 -51.93 -0.38 0.62 16 35 H 0.09 0.85 7.19 -51.92 -0.37 0.48 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.09 1.32 8.07 -51.93 -0.42 0.91 16 40 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 41 H 0.11 0.88 7.22 -51.93 -0.38 0.51 16 42 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.94 6.30 -52.49 -0.33 0.60 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.58 380.52 -7.25 -40.83 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.31 Total: -1.67 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.62 Total: -3.96 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 1.09 Total: -41.72 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.12 Total: -15.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.58 -7.25 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.228 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds