Wall clock time and date at job start Tue Mar 31 2020 11:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99622 * 2 1 4 4 C 1.53006 * 109.46951 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47176 * 64.99463 * 4 3 2 6 6 C 1.46509 * 119.99391 * 90.00052 * 5 4 3 7 7 C 1.50696 * 109.46999 * 269.99936 * 6 5 4 8 8 C 1.38365 * 119.84509 * 90.00453 * 7 6 5 9 9 C 1.37947 * 120.14940 * 179.97438 * 8 7 6 10 10 C 1.39629 * 119.84839 * 359.97438 * 9 8 7 11 11 C 1.43205 * 120.15217 * 180.02562 * 10 9 8 12 12 N 7.14803 * 66.99452 * 290.24035 * 2 1 3 13 13 C 1.39630 * 119.69955 * 0.27680 * 10 9 8 14 14 C 1.37951 * 119.84578 * 359.46927 * 13 10 9 15 15 C 1.34771 * 120.00232 * 270.00535 * 5 4 3 16 16 O 1.21287 * 119.99719 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00114 * 359.97438 * 15 5 4 18 18 C 1.53000 * 109.47156 * 180.02562 * 17 15 5 19 19 C 1.50697 * 109.47156 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00238 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99739 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99726 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 120.00281 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.46864 * 90.00034 * 23 21 19 25 25 H 1.48506 * 109.47351 * 209.99949 * 23 21 19 26 26 H 1.48497 * 109.47255 * 330.00051 * 23 21 19 27 27 H 1.09000 * 109.46626 * 59.99944 * 1 2 3 28 28 H 1.08995 * 109.46646 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47147 * 300.00423 * 1 2 3 30 30 H 1.08999 * 109.47217 * 60.00230 * 3 2 1 31 31 H 1.08998 * 109.47171 * 299.99753 * 3 2 1 32 32 H 1.09005 * 109.46990 * 305.00217 * 4 3 2 33 33 H 1.09001 * 109.47307 * 185.00047 * 4 3 2 34 34 H 1.09000 * 109.46558 * 150.00360 * 6 5 4 35 35 H 1.08992 * 109.47156 * 30.00123 * 6 5 4 36 36 H 1.07992 * 119.92688 * 0.02562 * 8 7 6 37 37 H 1.08003 * 120.07687 * 179.97438 * 9 8 7 38 38 H 1.07999 * 120.08232 * 179.69881 * 13 10 9 39 39 H 1.08002 * 119.92809 * 180.23515 * 14 13 10 40 40 H 1.08997 * 109.47540 * 300.00539 * 17 15 5 41 41 H 1.08998 * 109.46746 * 60.00934 * 17 15 5 42 42 H 1.08997 * 109.47255 * 300.00615 * 18 17 15 43 43 H 1.09009 * 109.46770 * 60.00265 * 18 17 15 44 44 H 0.96998 * 119.99663 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9768 0.5640 -1.2508 6 6 4.2883 1.3999 -2.4130 7 6 3.0442 1.5925 -3.2412 8 6 2.2057 2.6631 -2.9855 9 6 1.0655 2.8457 -3.7401 10 6 0.7586 1.9476 -4.7642 11 6 -0.4231 2.1313 -5.5520 12 7 -1.3645 2.2762 -6.1732 13 6 1.6064 0.8665 -5.0134 14 6 2.7462 0.6988 -4.2545 15 6 4.0959 -0.7759 -1.3330 16 8 4.4617 -1.2897 -2.3690 17 6 3.7759 -1.6356 -0.1374 18 6 3.9924 -3.1074 -0.4950 19 6 3.6729 -3.9671 0.7008 20 1 3.3476 -3.5096 1.6233 21 6 3.7960 -5.3379 0.6170 22 7 3.5167 -6.0882 1.6604 23 14 4.3594 -6.1292 -0.9785 24 1 5.8399 -6.2453 -0.9776 25 1 3.7570 -7.4811 -1.1003 26 1 3.9293 -5.2905 -2.1259 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9785 2.1767 0.0902 34 1 5.0544 0.9125 -3.0161 35 1 4.6539 2.3696 -2.0755 36 1 2.4448 3.3577 -2.1939 37 1 0.4116 3.6815 -3.5392 38 1 1.3725 0.1653 -5.8008 39 1 3.4049 -0.1348 -4.4486 40 1 4.4295 -1.3635 0.6913 41 1 2.7368 -1.4812 0.1534 42 1 3.3391 -3.3799 -1.3238 43 1 5.0316 -3.2616 -0.7856 44 1 3.6037 -7.0525 1.6015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292517021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:19 Heat of formation + Delta-G solvation = -26.559394 kcal Electronic energy + Delta-G solvation = -26587.701251 eV Core-core repulsion = 22891.515397 eV Total energy + Delta-G solvation = -3696.185854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32313 -39.16100 -37.72049 -36.74482 -35.42255 -33.46963 -32.47285 -31.40193 -31.05004 -29.80297 -27.41161 -26.33990 -25.34229 -23.09098 -22.97852 -22.68124 -20.80606 -19.19257 -18.58039 -17.26511 -16.80574 -16.43413 -16.11775 -15.83604 -15.68109 -15.47831 -14.92077 -14.69794 -14.24722 -14.12755 -14.02654 -13.76988 -13.45395 -13.18221 -13.12628 -12.79137 -12.69392 -12.49604 -12.47555 -12.27256 -11.95893 -11.74152 -11.68335 -11.37639 -11.24052 -11.11472 -10.81462 -9.95320 -9.89962 -9.72064 -9.68328 -9.33049 -9.23397 -9.09789 -8.88559 -8.60275 -8.43835 -5.96770 -3.94007 0.45175 1.07088 2.39415 2.60301 3.14414 3.23984 3.41308 3.47822 3.58969 3.60761 3.68337 3.77883 4.46208 4.55825 4.56241 4.58414 4.86658 4.96638 5.01477 5.05378 5.15890 5.26661 5.28868 5.37947 5.39264 5.42061 5.43658 5.49251 5.61893 5.74140 5.77070 5.82243 5.90387 6.04209 6.21700 6.30964 6.46631 6.54578 6.60579 6.94791 7.19987 7.21028 7.48208 7.55699 7.60945 7.87547 8.57080 8.68909 9.08033 9.67082 11.16331 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.003742 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.584388 B = 7481.635797 C = 7865.581758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.032 3.968 4 C 0.111 3.889 5 N -0.617 5.617 6 C 0.147 3.853 7 C -0.067 4.067 8 C -0.113 4.113 9 C -0.076 4.076 10 C -0.034 4.034 11 C 0.257 3.743 12 N -0.424 5.424 13 C -0.069 4.069 14 C -0.093 4.093 15 C 0.525 3.475 16 O -0.541 6.541 17 C -0.127 4.127 18 C 0.004 3.996 19 C -0.518 4.518 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.906 5.906 23 Si 0.876 3.124 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.261 1.261 27 H 0.035 0.965 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.021 0.979 43 H 0.014 0.986 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 22.944 -6.321 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.046 4.046 4 C -0.012 4.012 5 N -0.351 5.351 6 C 0.024 3.976 7 C -0.069 4.069 8 C -0.132 4.132 9 C -0.097 4.097 10 C -0.038 4.038 11 C -0.058 4.058 12 N -0.099 5.099 13 C -0.090 4.090 14 C -0.111 4.111 15 C 0.316 3.684 16 O -0.417 6.417 17 C -0.166 4.166 18 C -0.034 4.034 19 C -0.556 4.556 20 H 0.090 0.910 21 C -0.133 4.133 22 N -0.545 5.545 23 Si 0.703 3.297 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.186 1.186 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.096 0.904 41 H 0.131 0.869 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.046 22.512 -7.772 24.009 hybrid contribution 0.222 -0.266 -0.432 0.553 sum -2.824 22.246 -8.203 23.878 Atomic orbital electron populations 1.22725 0.81356 1.03155 0.99159 1.88022 1.19425 1.26325 1.95248 1.23204 0.94596 0.86251 1.00508 1.21690 0.92355 0.99524 0.87646 1.48080 1.69027 1.06529 1.11457 1.20396 0.93769 0.95828 0.87635 1.20625 0.97203 0.93956 0.95104 1.20932 0.94314 0.98223 0.99699 1.21079 0.97029 0.97902 0.93656 1.16006 0.91210 0.99116 0.97431 1.25838 0.92988 0.93588 0.93367 1.81304 1.10900 1.08102 1.09589 1.21238 0.93267 0.95401 0.99051 1.21256 0.96739 0.98866 0.94279 1.21581 0.74549 0.81119 0.91106 1.90607 1.46245 1.72536 1.32265 1.21875 1.04312 0.96526 0.93873 1.19349 0.96884 0.89865 0.97329 1.21129 1.45220 0.91109 0.98112 0.90971 1.24971 0.94846 0.97347 0.96164 1.69919 1.49820 1.05095 1.29716 0.86816 0.79155 0.78481 0.85203 1.20349 1.21590 1.18558 0.94642 0.89315 0.94368 0.92768 0.92640 0.88614 0.89177 0.88624 0.89700 0.85108 0.85209 0.85011 0.84021 0.90431 0.86925 0.96069 0.96758 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.37 -4.95 7.42 -35.23 -0.26 -5.21 16 3 C 0.03 0.30 6.28 37.16 0.23 0.53 16 4 C 0.11 1.01 5.82 -4.04 -0.02 0.99 16 5 N -0.62 -7.45 2.44 -175.05 -0.43 -7.88 16 6 C 0.15 1.39 5.57 -5.19 -0.03 1.36 16 7 C -0.07 -0.62 5.31 -104.53 -0.55 -1.18 16 8 C -0.11 -0.81 7.44 -39.64 -0.29 -1.10 16 9 C -0.08 -0.57 9.76 -39.17 -0.38 -0.95 16 10 C -0.03 -0.32 5.73 -106.93 -0.61 -0.93 16 11 C 0.26 2.81 15.34 -22.43 -0.34 2.46 16 12 N -0.42 -5.55 18.55 41.89 0.78 -4.78 16 13 C -0.07 -0.67 9.76 -39.17 -0.38 -1.06 16 14 C -0.09 -1.00 9.68 -39.64 -0.38 -1.38 16 15 C 0.52 9.13 7.37 -10.99 -0.08 9.05 16 16 O -0.54 -11.05 15.07 5.55 0.08 -10.97 16 17 C -0.13 -2.49 4.12 -27.88 -0.11 -2.60 16 18 C 0.00 0.09 3.33 -27.88 -0.09 0.00 16 19 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 20 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 22 N -0.91 -28.20 13.96 55.43 0.77 -27.42 16 23 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 24 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 5.15 -51.93 -0.27 0.20 16 32 H 0.10 0.97 6.44 -51.93 -0.33 0.64 16 33 H 0.09 0.49 7.89 -51.93 -0.41 0.08 16 34 H 0.10 1.04 7.36 -51.93 -0.38 0.66 16 35 H 0.08 0.52 7.83 -51.93 -0.41 0.11 16 36 H 0.13 0.60 7.81 -52.49 -0.41 0.19 16 37 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 1.74 7.56 -52.49 -0.40 1.35 16 40 H 0.08 1.42 7.40 -51.93 -0.38 1.04 16 41 H 0.11 2.21 5.12 -51.93 -0.27 1.94 16 42 H 0.02 0.56 7.16 -51.93 -0.37 0.18 16 43 H 0.01 0.37 7.53 -51.92 -0.39 -0.03 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -35.69 369.55 -6.68 -42.37 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -6.14 Total: -3.08 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.38 Total: -6.63 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 1.12 Total: -40.08 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.18 Total: -16.18 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.69 -6.68 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292517021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.813 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds