Wall clock time and date at job start Tue Mar 31 2020 11:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47094 * 120.00208 * 2 1 4 4 O 1.21619 * 120.00074 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00118 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00113 * 359.97438 * 5 3 2 7 7 C 1.46503 * 120.00376 * 179.97438 * 5 3 2 8 8 C 1.50695 * 109.47332 * 270.00292 * 7 5 3 9 9 O 1.21284 * 120.00284 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99918 * 179.72414 * 8 7 5 11 11 C 1.46503 * 120.00040 * 175.34598 * 10 8 7 12 12 H 1.09003 * 109.46946 * 38.57415 * 11 10 8 13 13 C 1.53001 * 109.47048 * 158.57143 * 11 10 8 14 14 C 1.50700 * 109.47288 * 294.53293 * 13 11 10 15 15 H 1.08001 * 119.99898 * 354.98990 * 14 13 11 16 16 C 1.37878 * 120.00052 * 174.98463 * 14 13 11 17 17 N 1.31513 * 119.99851 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99995 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47090 * 90.00455 * 18 16 14 20 20 H 1.48504 * 109.47083 * 210.00342 * 18 16 14 21 21 H 1.48499 * 109.47308 * 330.00544 * 18 16 14 22 22 C 1.50696 * 109.47126 * 278.57265 * 11 10 8 23 23 C 1.38232 * 119.99904 * 319.72733 * 22 11 10 24 24 C 1.38234 * 120.00184 * 179.78908 * 23 22 11 25 25 C 1.38240 * 119.99558 * 0.43727 * 24 23 22 26 26 C 1.38233 * 120.00117 * 359.81385 * 25 24 23 27 27 C 1.38233 * 120.00042 * 140.00169 * 22 11 10 28 28 H 1.08007 * 120.00570 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99519 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46571 * 270.00308 * 6 5 3 32 32 H 1.08995 * 109.46839 * 29.99615 * 6 5 3 33 33 H 1.09000 * 109.47204 * 150.00171 * 6 5 3 34 34 H 1.08995 * 109.47458 * 149.99495 * 7 5 3 35 35 H 1.09008 * 109.46837 * 30.00204 * 7 5 3 36 36 H 0.96998 * 120.00364 * 355.33878 * 10 8 7 37 37 H 1.09000 * 109.47246 * 54.53130 * 13 11 10 38 38 H 1.09004 * 109.46725 * 174.53252 * 13 11 10 39 39 H 0.97000 * 120.00045 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.00180 * 359.97438 * 23 22 11 41 41 H 1.07997 * 120.00685 * 180.27366 * 24 23 22 42 42 H 1.08001 * 119.99928 * 179.83720 * 25 24 23 43 43 H 1.08004 * 120.00270 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00151 * 359.97291 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2738 0.0000 4 8 1.4574 2.3271 -0.0005 5 7 3.4132 1.2738 0.0005 6 6 4.1457 0.0051 0.0017 7 6 4.1458 2.5425 0.0000 8 6 4.3975 2.9766 -1.4210 9 8 4.0041 2.2934 -2.3426 10 7 5.0553 4.1268 -1.6677 11 6 5.3898 4.4985 -3.0448 12 1 4.5667 4.2251 -3.7050 13 6 5.6262 6.0081 -3.1225 14 6 4.3394 6.7340 -2.8255 15 1 3.4253 6.1766 -2.6834 16 6 4.3290 8.1098 -2.7351 17 7 5.4420 8.7886 -2.9085 18 14 2.7338 9.0097 -2.3677 19 1 2.5773 9.1601 -0.8986 20 1 2.7652 10.3520 -3.0021 21 1 1.5907 8.2324 -2.9102 22 6 6.6390 3.7718 -3.4719 23 6 7.6894 3.6234 -2.5858 24 6 8.8336 2.9530 -2.9761 25 6 8.9308 2.4388 -4.2557 26 6 7.8823 2.5917 -5.1435 27 6 6.7366 3.2585 -4.7517 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8699 -0.9354 0.0004 31 1 4.3269 -0.3088 1.0297 32 1 3.5568 -0.7549 -0.5118 33 1 5.0983 0.1351 -0.5119 34 1 5.0979 2.4125 0.5143 35 1 3.5565 3.3026 0.5131 36 1 5.3073 4.7086 -0.9336 37 1 6.3824 6.2956 -2.3919 38 1 5.9692 6.2711 -4.1232 39 1 5.4347 9.7565 -2.8452 40 1 7.6151 4.0286 -1.5874 41 1 9.6526 2.8331 -2.2824 42 1 9.8257 1.9173 -4.5615 43 1 7.9584 2.1904 -6.1433 44 1 5.9174 3.3779 -5.4454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860335708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:19 Heat of formation + Delta-G solvation = -21.419833 kcal Electronic energy + Delta-G solvation = -26276.782907 eV Core-core repulsion = 22580.819921 eV Total energy + Delta-G solvation = -3695.962986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.18635 -39.30347 -38.21196 -35.60710 -34.93335 -33.07562 -32.71142 -31.27931 -30.48971 -29.13882 -28.31562 -26.55203 -24.87302 -22.91324 -22.29281 -21.94900 -20.41720 -19.68713 -18.72772 -17.61806 -17.12014 -16.73396 -16.22200 -16.10338 -15.28284 -14.98057 -14.83714 -14.55462 -14.44773 -13.96913 -13.85498 -13.44256 -13.15969 -13.05508 -12.94087 -12.83003 -12.61256 -12.49048 -12.10047 -11.85072 -11.65415 -11.52278 -11.13897 -10.92113 -10.72823 -10.57211 -10.47779 -9.93387 -9.89662 -9.73657 -9.66721 -9.27769 -8.62731 -8.56144 -8.44673 -8.36730 -8.18114 -6.06792 -4.09918 1.32697 1.76078 1.78172 2.85028 3.11402 3.31209 3.33254 3.37940 3.44522 3.86666 4.23492 4.43770 4.50967 4.85475 5.03063 5.13582 5.16176 5.25409 5.25775 5.29859 5.34201 5.39262 5.43021 5.53595 5.56521 5.59005 5.89155 5.92892 6.08381 6.12929 6.18248 6.33746 6.37180 6.44222 6.59594 6.82535 6.83644 6.93289 7.11253 7.32001 7.38687 7.51296 7.63074 7.90509 8.11269 8.21807 8.28834 8.78133 8.96593 9.55634 11.03607 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.005221 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.065383 B = 5361.276442 C = 8234.751167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.210 4.210 3 C 0.547 3.453 4 O -0.536 6.536 5 N -0.595 5.595 6 C 0.083 3.917 7 C 0.094 3.906 8 C 0.495 3.505 9 O -0.542 6.542 10 N -0.699 5.699 11 C 0.185 3.815 12 H 0.084 0.916 13 C 0.024 3.976 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.069 4.069 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.402 0.598 37 H 0.029 0.971 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -18.650 6.494 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.230 4.230 3 C 0.337 3.663 4 O -0.414 6.414 5 N -0.327 5.327 6 C -0.060 4.060 7 C -0.032 4.032 8 C 0.279 3.721 9 O -0.419 6.419 10 N -0.350 5.350 11 C 0.081 3.919 12 H 0.102 0.898 13 C -0.013 4.013 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.237 0.763 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.720 -18.398 5.827 19.376 hybrid contribution -0.476 0.845 0.408 1.052 sum 1.244 -17.553 6.236 18.670 Atomic orbital electron populations 1.24741 0.95394 1.03242 0.90237 1.22821 0.96323 0.97018 1.06884 1.18683 0.81698 0.90020 0.75910 1.90819 1.67723 1.33328 1.49551 1.47220 1.05648 1.06396 1.73464 1.21817 0.97653 0.85169 1.01313 1.21343 0.98585 0.87798 0.95511 1.20954 0.77922 0.81720 0.91467 1.90651 1.50516 1.54720 1.45996 1.45941 1.57586 1.21474 1.09957 1.20210 0.92350 0.97206 0.82161 0.89839 1.19386 0.97895 0.85512 0.98512 1.21155 0.94528 0.91415 1.48704 0.92352 1.24968 0.96196 0.97686 0.95173 1.69959 1.26315 1.07189 1.49734 0.86601 0.84008 0.79029 0.78482 1.20598 1.21248 1.19796 1.20559 0.96542 0.96065 0.93889 1.20914 0.93106 0.98993 0.99663 1.21040 0.97766 0.99205 0.96330 1.20992 0.98615 1.01501 0.94262 1.21040 0.93938 0.99849 0.99243 1.21025 0.97924 0.97636 0.96099 0.86789 0.86788 0.85422 0.92473 0.90735 0.90897 0.87712 0.86877 0.76338 0.95316 0.95129 0.92899 0.86504 0.86742 0.86863 0.86642 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 14.31 28.91 0.41 -0.53 16 2 C -0.21 -2.31 9.21 -37.81 -0.35 -2.66 16 3 C 0.55 8.36 7.62 -12.67 -0.10 8.26 16 4 O -0.54 -10.48 15.80 5.26 0.08 -10.39 16 5 N -0.60 -7.97 2.36 -184.36 -0.44 -8.40 16 6 C 0.08 0.77 10.15 59.85 0.61 1.37 16 7 C 0.09 1.30 5.89 -5.19 -0.03 1.27 16 8 C 0.50 8.92 7.80 -10.99 -0.09 8.83 16 9 O -0.54 -11.68 16.12 5.55 0.09 -11.59 16 10 N -0.70 -12.76 4.09 -54.93 -0.22 -12.99 16 11 C 0.19 3.83 2.11 -69.08 -0.15 3.69 16 12 H 0.08 1.94 7.49 -51.93 -0.39 1.55 16 13 C 0.02 0.59 4.47 -27.88 -0.12 0.46 16 14 C -0.52 -14.11 8.85 -34.44 -0.30 -14.41 16 15 H 0.06 1.63 7.75 -52.49 -0.41 1.22 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 22 C -0.07 -1.28 4.86 -104.63 -0.51 -1.79 16 23 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 24 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 26 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 27 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 28 H 0.11 0.70 8.06 -52.48 -0.42 0.28 16 29 H 0.11 1.29 7.49 -52.49 -0.39 0.90 16 30 H 0.13 1.00 6.22 -52.48 -0.33 0.67 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.60 6.09 -51.93 -0.32 0.28 16 33 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.10 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.11 1.63 7.42 -51.92 -0.39 1.24 16 36 H 0.40 6.69 8.57 -40.82 -0.35 6.34 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.12 1.77 7.73 -52.48 -0.41 1.37 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.12 2.03 8.04 -52.48 -0.42 1.61 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -35.63 380.30 -8.03 -43.67 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.33 Total: 7.42 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.67 Total: -5.02 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.08 Total: -46.52 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.17 Total: -21.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.63 -8.03 -43.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860335708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.247 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds