Wall clock time and date at job start Tue Mar 31 2020 11:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47094 * 120.00208 * 2 1 4 4 O 1.21619 * 120.00074 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00118 * 179.97438 * 3 2 1 6 6 C 1.46501 * 120.00113 * 359.97438 * 5 3 2 7 7 C 1.46503 * 120.00376 * 179.97438 * 5 3 2 8 8 C 1.50695 * 109.47332 * 270.00292 * 7 5 3 9 9 O 1.21284 * 120.00284 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99918 * 179.72414 * 8 7 5 11 11 C 1.46503 * 120.00040 * 175.34598 * 10 8 7 12 12 H 1.09003 * 109.46946 * 38.57415 * 11 10 8 13 13 C 1.53001 * 109.47048 * 158.57143 * 11 10 8 14 14 C 1.50700 * 109.47288 * 294.53293 * 13 11 10 15 15 H 1.08001 * 119.99898 * 354.98990 * 14 13 11 16 16 C 1.37878 * 120.00052 * 174.98463 * 14 13 11 17 17 N 1.31513 * 119.99851 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99995 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47090 * 90.00455 * 18 16 14 20 20 H 1.48504 * 109.47083 * 210.00342 * 18 16 14 21 21 H 1.48499 * 109.47308 * 330.00544 * 18 16 14 22 22 C 1.50696 * 109.47126 * 278.57265 * 11 10 8 23 23 C 1.38232 * 119.99904 * 319.72733 * 22 11 10 24 24 C 1.38234 * 120.00184 * 179.78908 * 23 22 11 25 25 C 1.38240 * 119.99558 * 0.43727 * 24 23 22 26 26 C 1.38233 * 120.00117 * 359.81385 * 25 24 23 27 27 C 1.38233 * 120.00042 * 140.00169 * 22 11 10 28 28 H 1.08007 * 120.00570 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00169 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99519 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46571 * 270.00308 * 6 5 3 32 32 H 1.08995 * 109.46839 * 29.99615 * 6 5 3 33 33 H 1.09000 * 109.47204 * 150.00171 * 6 5 3 34 34 H 1.08995 * 109.47458 * 149.99495 * 7 5 3 35 35 H 1.09008 * 109.46837 * 30.00204 * 7 5 3 36 36 H 0.96998 * 120.00364 * 355.33878 * 10 8 7 37 37 H 1.09000 * 109.47246 * 54.53130 * 13 11 10 38 38 H 1.09004 * 109.46725 * 174.53252 * 13 11 10 39 39 H 0.97000 * 120.00045 * 179.97438 * 17 16 14 40 40 H 1.08003 * 120.00180 * 359.97438 * 23 22 11 41 41 H 1.07997 * 120.00685 * 180.27366 * 24 23 22 42 42 H 1.08001 * 119.99928 * 179.83720 * 25 24 23 43 43 H 1.08004 * 120.00270 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00151 * 359.97291 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0654 1.2738 0.0000 4 8 1.4574 2.3271 -0.0005 5 7 3.4132 1.2738 0.0005 6 6 4.1457 0.0051 0.0017 7 6 4.1458 2.5425 0.0000 8 6 4.3975 2.9766 -1.4210 9 8 4.0041 2.2934 -2.3426 10 7 5.0553 4.1268 -1.6677 11 6 5.3898 4.4985 -3.0448 12 1 4.5667 4.2251 -3.7050 13 6 5.6262 6.0081 -3.1225 14 6 4.3394 6.7340 -2.8255 15 1 3.4253 6.1766 -2.6834 16 6 4.3290 8.1098 -2.7351 17 7 5.4420 8.7886 -2.9085 18 14 2.7338 9.0097 -2.3677 19 1 2.5773 9.1601 -0.8986 20 1 2.7652 10.3520 -3.0021 21 1 1.5907 8.2324 -2.9102 22 6 6.6390 3.7718 -3.4719 23 6 7.6894 3.6234 -2.5858 24 6 8.8336 2.9530 -2.9761 25 6 8.9308 2.4388 -4.2557 26 6 7.8823 2.5917 -5.1435 27 6 6.7366 3.2585 -4.7517 28 1 -0.5401 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8699 -0.9354 0.0004 31 1 4.3269 -0.3088 1.0297 32 1 3.5568 -0.7549 -0.5118 33 1 5.0983 0.1351 -0.5119 34 1 5.0979 2.4125 0.5143 35 1 3.5565 3.3026 0.5131 36 1 5.3073 4.7086 -0.9336 37 1 6.3824 6.2956 -2.3919 38 1 5.9692 6.2711 -4.1232 39 1 5.4347 9.7565 -2.8452 40 1 7.6151 4.0286 -1.5874 41 1 9.6526 2.8331 -2.2824 42 1 9.8257 1.9173 -4.5615 43 1 7.9584 2.1904 -6.1433 44 1 5.9174 3.3779 -5.4454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860335708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:17 Heat of formation + Delta-G solvation = -44.365039 kcal Electronic energy + Delta-G solvation = -26277.777886 eV Core-core repulsion = 22580.819921 eV Total energy + Delta-G solvation = -3696.957965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44905 -40.59108 -39.53899 -36.97127 -36.33366 -34.75924 -33.95668 -32.71974 -31.70416 -30.64812 -29.66520 -27.49857 -26.63768 -24.05121 -23.76549 -23.31209 -21.79313 -21.16384 -19.72532 -18.76907 -18.60354 -18.26659 -17.76842 -17.32444 -16.71016 -16.50061 -16.29302 -15.97870 -15.71818 -15.27702 -14.90575 -14.64589 -14.43774 -14.36036 -14.18595 -14.11617 -13.82218 -13.69727 -13.45385 -13.41343 -13.03138 -12.88414 -12.68287 -12.58795 -12.51743 -12.16012 -11.88458 -11.59448 -11.37426 -11.14879 -11.00703 -10.77242 -10.62251 -10.00578 -9.75613 -9.71879 -9.50147 -8.24702 -6.34370 0.43546 0.51333 0.56156 1.34835 1.36367 1.47501 1.68015 1.82207 2.29405 2.36347 2.53564 2.98136 3.09223 3.64215 3.83683 4.01830 4.03290 4.14725 4.18493 4.22010 4.30623 4.32879 4.36847 4.43715 4.64798 4.73683 4.74622 4.75822 4.78613 4.91827 5.12018 5.20437 5.24907 5.25839 5.30850 5.39804 5.50177 5.60412 5.61295 5.64559 5.74402 5.90645 6.13874 6.19574 6.32836 6.67354 6.77652 7.10335 7.32527 7.35324 8.85747 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.005221 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.065383 B = 5361.276442 C = 8234.751167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.225 4.225 3 C 0.529 3.471 4 O -0.597 6.597 5 N -0.596 5.596 6 C 0.077 3.923 7 C 0.099 3.901 8 C 0.492 3.508 9 O -0.582 6.582 10 N -0.696 5.696 11 C 0.201 3.799 12 H 0.045 0.955 13 C 0.039 3.961 14 C -0.532 4.532 15 H 0.043 0.957 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.280 1.280 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.135 4.135 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.409 0.591 37 H 0.020 0.980 38 H 0.001 0.999 39 H 0.266 0.734 40 H 0.124 0.876 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.142 0.858 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -21.115 7.809 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.245 4.245 3 C 0.322 3.678 4 O -0.480 6.480 5 N -0.326 5.326 6 C -0.064 4.064 7 C -0.028 4.028 8 C 0.278 3.722 9 O -0.462 6.462 10 N -0.347 5.347 11 C 0.096 3.904 12 H 0.064 0.936 13 C 0.002 3.998 14 C -0.570 4.570 15 H 0.061 0.939 16 C -0.182 4.182 17 N -0.561 5.561 18 Si 0.776 3.224 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.097 4.097 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.154 4.154 28 H 0.175 0.825 29 H 0.107 0.893 30 H 0.183 0.817 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.169 0.831 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.038 0.962 38 H 0.020 0.980 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.160 0.840 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.229 -20.891 7.167 22.321 hybrid contribution -0.899 1.564 -0.058 1.805 sum 2.330 -19.327 7.109 20.724 Atomic orbital electron populations 1.25027 0.95183 1.04086 0.87904 1.22985 0.96714 0.96278 1.08531 1.19579 0.82428 0.90906 0.74899 1.90778 1.68984 1.35620 1.52612 1.47465 1.05528 1.07517 1.72125 1.22119 0.97155 0.83452 1.03715 1.21398 1.00679 0.88311 0.92381 1.21747 0.76568 0.80833 0.93006 1.90621 1.51997 1.55825 1.47747 1.45864 1.57740 1.21969 1.09090 1.19655 0.92682 0.95050 0.83014 0.93648 1.19118 0.96281 0.88131 0.96297 1.21345 0.94989 0.91946 1.48698 0.93850 1.25673 0.99143 0.98398 0.94954 1.70043 1.28017 1.07605 1.50419 0.85669 0.79980 0.77904 0.78811 1.19400 1.20286 1.20511 1.20372 0.96266 0.97915 0.95132 1.21079 0.93374 0.99561 0.99664 1.21454 0.97574 0.97586 0.97254 1.21478 0.99231 1.00232 0.93608 1.21362 0.93082 0.98836 1.00838 1.21140 0.99142 0.99303 0.95822 0.82488 0.89329 0.81684 0.89008 0.89482 0.91111 0.83076 0.87747 0.75466 0.96176 0.98036 0.92544 0.85787 0.83238 0.82993 0.84032 0.87612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 14.31 66.65 0.95 -0.54 16 2 C -0.22 -4.60 9.21 23.43 0.22 -4.38 16 3 C 0.53 16.27 7.62 86.57 0.66 16.93 16 4 O -0.60 -24.50 15.80 -4.09 -0.06 -24.57 16 5 N -0.60 -15.44 2.36 -855.45 -2.02 -17.46 16 6 C 0.08 1.21 10.15 127.77 1.30 2.50 16 7 C 0.10 2.70 5.89 85.63 0.50 3.21 16 8 C 0.49 18.30 7.80 87.66 0.68 18.98 16 9 O -0.58 -26.22 16.12 -3.04 -0.05 -26.27 16 10 N -0.70 -26.59 4.09 -446.09 -1.82 -28.41 16 11 C 0.20 8.91 2.11 44.24 0.09 9.00 16 12 H 0.05 2.31 7.49 -2.39 -0.02 2.30 16 13 C 0.04 2.02 4.47 29.85 0.13 2.15 16 14 C -0.53 -30.24 8.85 25.60 0.23 -30.02 16 15 H 0.04 2.55 7.75 -2.91 -0.02 2.53 16 16 C 0.02 1.00 5.46 84.66 0.46 1.46 16 17 N -0.92 -54.46 13.29 21.45 0.28 -54.17 16 18 Si 0.95 45.51 29.54 68.60 2.03 47.53 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 22 C -0.10 -3.67 4.86 -19.87 -0.10 -3.76 16 23 C -0.12 -3.80 9.32 22.27 0.21 -3.59 16 24 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 25 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 26 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 27 C -0.14 -4.90 9.67 22.27 0.22 -4.68 16 28 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.09 2.05 7.49 -2.91 -0.02 2.03 16 30 H 0.17 2.01 6.22 -2.91 -0.02 1.99 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 1.15 6.09 -2.39 -0.01 1.13 16 33 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 34 H 0.15 2.64 8.07 -2.39 -0.02 2.62 16 35 H 0.10 3.08 7.42 -2.38 -0.02 3.06 16 36 H 0.41 14.14 8.57 -92.71 -0.79 13.34 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.12 3.67 7.73 -2.91 -0.02 3.65 16 41 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 44 H 0.11 3.93 8.04 -2.91 -0.02 3.91 16 Total: -1.00 -83.10 380.30 4.79 -78.31 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.21 Total: 26.82 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 6.23 Total: -1.78 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -3.56 Total: -100.05 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.11 Total: -50.83 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -83.10 4.79 -78.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860335708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.944 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds