Wall clock time and date at job start Tue Mar 31 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46521 * 299.99510 * 3 2 1 6 6 H 1.48496 * 109.47167 * 59.99049 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00083 * 359.73444 * 7 2 1 10 10 C 1.46499 * 119.99973 * 180.27006 * 9 7 2 11 11 H 1.08997 * 110.88904 * 34.30291 * 10 9 7 12 12 C 1.55159 * 111.00618 * 270.41620 * 10 9 7 13 13 C 1.54371 * 102.92195 * 206.45777 * 12 10 9 14 14 N 1.47020 * 107.28944 * 22.13765 * 13 12 10 15 15 C 1.34774 * 125.64944 * 181.05971 * 14 13 12 16 16 O 1.21282 * 120.00237 * 174.94651 * 15 14 13 17 17 C 1.50700 * 119.99825 * 354.95102 * 15 14 13 18 18 H 1.09001 * 109.63581 * 335.15824 * 17 15 14 19 19 C 1.53308 * 109.63491 * 214.75683 * 17 15 14 20 20 C 1.52802 * 108.53012 * 170.52575 * 19 17 15 21 21 C 1.50447 * 110.45799 * 50.99372 * 20 19 17 22 22 N 1.32892 * 118.53635 * 162.36384 * 21 20 19 23 23 C 1.31601 * 121.06395 * 179.74684 * 22 21 20 24 24 N 1.31822 * 121.67362 * 359.96802 * 23 22 21 25 25 C 1.32189 * 120.63509 * 0.13607 * 24 23 22 26 26 C 1.37769 * 122.58272 * 342.30129 * 21 20 19 27 27 C 1.50343 * 122.79843 * 0.68083 * 26 21 20 28 28 C 1.47427 * 108.70519 * 1.09368 * 14 13 12 29 29 H 0.97003 * 119.99989 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99766 * 0.26898 * 9 7 2 31 31 H 1.09005 * 110.71582 * 324.78860 * 12 10 9 32 32 H 1.08995 * 110.71720 * 88.05674 * 12 10 9 33 33 H 1.09001 * 109.84158 * 262.73293 * 13 12 10 34 34 H 1.08995 * 110.02781 * 141.65355 * 13 12 10 35 35 H 1.09005 * 109.62605 * 290.23422 * 19 17 15 36 36 H 1.08994 * 109.63361 * 50.61326 * 19 17 15 37 37 H 1.09002 * 109.31179 * 171.29461 * 20 19 17 38 38 H 1.09008 * 109.30397 * 290.69482 * 20 19 17 39 39 H 1.08004 * 119.16733 * 179.97438 * 23 22 21 40 40 H 1.08007 * 120.36121 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.30992 * 222.06695 * 27 26 21 42 42 H 1.09000 * 109.31481 * 102.65560 * 27 26 21 43 43 H 1.08993 * 110.36803 * 217.03768 * 28 14 13 44 44 H 1.09001 * 110.36846 * 94.70643 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0066 10 6 2.0581 -3.6568 0.0131 11 1 2.9809 -3.5698 0.5866 12 6 2.3454 -4.1406 -1.4328 13 6 2.4545 -5.6717 -1.2693 14 7 1.7398 -6.0314 -0.0358 15 6 1.6218 -7.2753 0.4693 16 8 1.0862 -7.4451 1.5442 17 6 2.1554 -8.4553 -0.3014 18 1 2.1885 -8.2142 -1.3638 19 6 1.2477 -9.6702 -0.0769 20 6 1.6677 -10.7755 -1.0448 21 6 3.1502 -11.0162 -0.9569 22 7 3.6389 -12.1521 -1.4438 23 6 4.9282 -12.4116 -1.3975 24 7 5.7868 -11.5618 -0.8701 25 6 5.3730 -10.4127 -0.3644 26 6 4.0175 -10.1059 -0.3937 27 6 3.5589 -8.8008 0.1952 28 6 1.1729 -4.8062 0.5565 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0065 31 1 1.5208 -3.8818 -2.0971 32 1 3.2831 -3.7234 -1.7999 33 1 3.5022 -5.9615 -1.1886 34 1 1.9964 -6.1719 -2.1225 35 1 1.3543 -10.0223 0.9492 36 1 0.2104 -9.3917 -0.2625 37 1 1.1380 -11.6946 -0.7942 38 1 1.4102 -10.4806 -2.0622 39 1 5.2921 -13.3446 -1.8020 40 1 6.0804 -9.7198 0.0670 41 1 4.2498 -8.0105 -0.0983 42 1 3.5473 -8.8801 1.2822 43 1 1.2315 -4.8484 1.6441 44 1 0.1395 -4.6730 0.2363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968893671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:17 Heat of formation + Delta-G solvation = 17.513029 kcal Electronic energy + Delta-G solvation = -25890.159015 eV Core-core repulsion = 22228.177036 eV Total energy + Delta-G solvation = -3661.981980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72814 -40.10386 -37.81805 -36.63705 -34.42589 -34.18018 -31.90869 -31.59893 -30.60499 -29.59649 -27.88428 -25.66123 -24.70200 -23.61067 -23.37789 -22.81041 -20.89117 -20.14311 -19.02799 -17.94346 -17.43264 -17.38537 -17.05056 -15.98994 -15.83401 -15.28142 -14.83449 -14.44025 -14.35287 -14.25586 -14.11287 -13.94650 -13.60962 -13.34890 -13.24046 -12.84579 -12.56054 -12.51661 -12.25442 -11.99001 -11.72234 -11.44399 -11.24987 -11.23132 -11.15979 -10.90456 -10.76225 -10.71994 -10.35186 -10.09508 -9.84127 -9.70091 -9.56173 -9.51889 -9.02306 -8.49866 -7.10854 -5.87784 -3.18650 0.54640 0.69155 2.58925 3.00385 3.37100 3.38985 3.43052 3.45243 3.63734 3.85503 4.04212 4.21140 4.26261 4.38769 4.49850 4.59072 4.86889 4.91286 4.96575 4.97416 5.05130 5.15460 5.19489 5.24281 5.30549 5.41285 5.48106 5.51407 5.53415 5.67285 5.69036 5.71834 5.89604 5.90555 6.07614 6.08063 6.16761 6.29487 6.46918 6.54504 6.63050 6.83438 7.60637 7.62868 7.73653 8.19258 8.29576 9.41319 9.94821 10.29488 11.34382 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.002459 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.190757 B =11382.902716 C =11921.673521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.156 4.156 13 C 0.100 3.900 14 N -0.611 5.611 15 C 0.532 3.468 16 O -0.542 6.542 17 C -0.104 4.104 18 H 0.095 0.905 19 C -0.101 4.101 20 C -0.073 4.073 21 C 0.182 3.818 22 N -0.521 5.521 23 C 0.288 3.712 24 N -0.522 5.522 25 C 0.152 3.848 26 C -0.175 4.175 27 C -0.061 4.061 28 C 0.097 3.903 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.195 0.805 40 H 0.170 0.830 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -22.791 -4.040 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.197 4.197 13 C -0.023 4.023 14 N -0.345 5.345 15 C 0.320 3.680 16 O -0.419 6.419 17 C -0.125 4.125 18 H 0.113 0.887 19 C -0.139 4.139 20 C -0.110 4.110 21 C 0.037 3.963 22 N -0.235 5.235 23 C 0.000 4.000 24 N -0.236 5.236 25 C -0.015 4.015 26 C -0.179 4.179 27 C -0.099 4.099 28 C -0.026 4.026 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.212 0.788 40 H 0.187 0.813 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.563 -23.657 -3.802 25.126 hybrid contribution -0.017 1.700 0.091 1.702 sum 7.546 -21.957 -3.711 23.513 Atomic orbital electron populations 1.69672 1.05162 1.25832 1.57023 1.24782 0.95543 0.97859 1.02473 0.86099 0.78784 0.83897 0.77255 1.20473 1.21775 1.21758 1.19250 0.91069 0.83750 1.43509 0.90916 1.42272 1.05844 0.99355 1.88004 1.21292 0.94513 0.85688 0.92499 0.91730 1.23440 1.02946 0.91209 1.02100 1.22129 0.95931 0.97999 0.86237 1.48504 1.53450 1.06615 1.25892 1.20020 0.79586 0.82679 0.85723 1.90708 1.44789 1.84849 1.21562 1.21312 0.96028 0.94114 1.01080 0.88670 1.21454 0.99499 0.92592 1.00396 1.20461 0.88631 1.00497 1.01430 1.21367 0.97069 0.88156 0.89667 1.68400 1.16814 1.20045 1.18277 1.24906 0.84776 0.98186 0.92152 1.68432 1.40155 1.03879 1.11113 1.23311 0.93441 0.93049 0.91723 1.21106 0.95612 0.98900 1.02284 1.20223 0.95180 0.93119 1.01419 1.22592 0.97951 0.83118 0.98980 0.93363 0.77928 0.90518 0.90654 0.91915 0.92002 0.90092 0.89853 0.88593 0.88866 0.78823 0.81336 0.89381 0.88918 0.90456 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.79 5.26 -51.35 -0.27 -17.06 16 10 C 0.17 3.14 3.70 -65.78 -0.24 2.89 16 11 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 12 C -0.16 -2.34 6.65 -24.87 -0.17 -2.50 16 13 C 0.10 1.17 6.16 -3.04 -0.02 1.15 16 14 N -0.61 -8.47 3.33 -170.49 -0.57 -9.03 16 15 C 0.53 7.18 6.82 -10.99 -0.07 7.11 16 16 O -0.54 -9.30 16.69 5.56 0.09 -9.21 16 17 C -0.10 -0.98 2.18 -91.70 -0.20 -1.18 16 18 H 0.10 0.78 6.93 -51.93 -0.36 0.42 16 19 C -0.10 -0.88 4.80 -26.67 -0.13 -1.01 16 20 C -0.07 -0.55 5.96 -28.11 -0.17 -0.72 16 21 C 0.18 1.68 6.62 -82.43 -0.55 1.14 16 22 N -0.52 -5.20 10.32 -11.00 -0.11 -5.31 16 23 C 0.29 2.58 12.29 -92.30 -1.13 1.45 16 24 N -0.52 -5.06 10.44 -14.54 -0.15 -5.21 16 25 C 0.15 1.29 10.94 -17.11 -0.19 1.10 16 26 C -0.17 -1.51 5.73 -104.68 -0.60 -2.11 16 27 C -0.06 -0.50 5.02 -28.14 -0.14 -0.65 16 28 C 0.10 1.61 6.57 -2.52 -0.02 1.60 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 30 H 0.39 9.73 7.73 -40.82 -0.32 9.41 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 35 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 44 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -32.17 360.78 -10.26 -42.43 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.52 Total: 6.47 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -3.87 Total: 1.31 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.38 Total: -62.99 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.17 -10.26 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.946 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds